Wall clock time and date at job start Tue Mar 31 2020 17:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.49329 * 2 1 4 4 C 1.53098 * 109.48002 * 239.97173 * 2 1 3 5 5 C 1.53180 * 109.16075 * 297.62693 * 4 2 1 6 6 H 1.08999 * 109.54515 * 62.88494 * 5 4 2 7 7 S 1.81404 * 109.54204 * 183.15137 * 5 4 2 8 8 O 1.42099 * 110.53962 * 291.18248 * 7 5 4 9 9 O 1.42106 * 110.54296 * 67.93009 * 7 5 4 10 10 N 1.65593 * 104.45024 * 179.55256 * 7 5 4 11 11 C 1.46927 * 120.63313 * 269.71890 * 10 7 5 12 12 C 1.52761 * 109.00733 * 233.58444 * 11 10 7 13 13 C 1.53037 * 109.38436 * 305.58366 * 12 11 10 14 14 C 1.52996 * 109.45879 * 181.25975 * 13 12 11 15 15 C 1.50698 * 109.47056 * 64.93853 * 14 13 12 16 16 H 1.07996 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00147 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99876 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47286 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46758 * 120.00286 * 19 17 15 22 22 H 1.48506 * 109.47135 * 239.99881 * 19 17 15 23 23 C 1.53047 * 109.53549 * 61.24607 * 13 12 11 24 24 C 1.46926 * 120.62929 * 90.00172 * 10 7 5 25 25 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 5 4 27 27 O 1.42905 * 109.48333 * 120.03200 * 2 1 3 28 28 H 1.09002 * 109.46833 * 299.96421 * 1 2 3 29 29 H 1.08999 * 109.47234 * 59.97208 * 1 2 3 30 30 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.52270 * 177.71938 * 4 2 1 32 32 H 1.08998 * 109.51931 * 57.52860 * 4 2 1 33 33 H 1.08996 * 109.58404 * 353.42009 * 11 10 7 34 34 H 1.09002 * 109.58681 * 113.84579 * 11 10 7 35 35 H 1.09005 * 109.55930 * 185.55348 * 12 11 10 36 36 H 1.08997 * 109.36128 * 65.50486 * 12 11 10 37 37 H 1.08991 * 109.45233 * 301.23104 * 13 12 11 38 38 H 1.09005 * 109.47226 * 184.93331 * 14 13 12 39 39 H 1.08996 * 109.47727 * 304.93587 * 14 13 12 40 40 H 0.97003 * 120.00342 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.49784 * 178.68260 * 23 13 12 42 42 H 1.08999 * 109.49494 * 58.58066 * 23 13 12 43 43 H 1.09001 * 109.58788 * 246.15460 * 24 10 7 44 44 H 1.08997 * 109.58941 * 6.43645 * 24 10 7 45 45 H 1.09004 * 109.52714 * 297.07587 * 25 5 4 46 46 H 1.09001 * 109.57654 * 176.92317 * 25 5 4 47 47 H 1.08997 * 109.48111 * 182.40965 * 26 25 5 48 48 H 1.09000 * 109.48212 * 62.37239 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2496 5 6 1.5756 -2.1814 -1.2122 6 1 0.4866 -2.2179 -1.2408 7 16 2.2526 -3.0708 -2.6409 8 8 1.6537 -2.6102 -3.8444 9 8 3.6633 -3.1978 -2.5266 10 7 1.6881 -4.6181 -2.4698 11 6 2.4628 -5.6194 -1.7243 12 6 2.6632 -6.8508 -2.6058 13 6 1.3029 -7.3485 -3.1000 14 6 1.4990 -8.6003 -3.9574 15 6 2.0461 -9.7142 -3.1025 16 1 2.2354 -9.5459 -2.0526 17 6 2.3049 -10.9481 -3.6605 18 7 2.0748 -11.1529 -4.9391 19 14 2.9837 -12.3286 -2.6008 20 1 3.1533 -11.8451 -1.2070 21 1 2.0389 -13.4742 -2.6154 22 1 4.2981 -12.7642 -3.1376 23 6 0.6320 -6.2570 -3.9372 24 6 0.4060 -5.0174 -3.0660 25 6 2.0764 -2.8322 0.0808 26 6 1.5645 -2.0285 1.2790 27 8 2.0066 -0.6743 1.1663 28 1 -0.3633 0.5133 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1297 -0.6874 -1.2710 32 1 1.6420 -0.2358 -2.1398 33 1 3.4333 -5.2034 -1.4540 34 1 1.9207 -5.9035 -0.8223 35 1 3.1506 -7.6370 -2.0292 36 1 3.2861 -6.5862 -3.4601 37 1 0.6719 -7.5894 -2.2446 38 1 0.5417 -8.9042 -4.3811 39 1 2.2001 -8.3828 -4.7631 40 1 2.2566 -12.0212 -5.3316 41 1 -0.3262 -6.6206 -4.3082 42 1 1.2741 -5.9979 -4.7790 43 1 -0.3074 -5.2513 -2.2757 44 1 0.0186 -4.2034 -3.6786 45 1 3.1664 -2.8401 0.0863 46 1 1.7046 -3.8550 0.1426 47 1 1.9531 -2.4622 2.2004 48 1 0.4750 -2.0551 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564907795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:58 Heat of formation + Delta-G solvation = -139.174159 kcal Electronic energy + Delta-G solvation = -28175.938045 eV Core-core repulsion = 24357.056518 eV Total energy + Delta-G solvation = -3818.881527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.11699 -38.34929 -37.23644 -35.98056 -34.35197 -33.96251 -32.64790 -31.92309 -30.74718 -28.69519 -27.69199 -25.02805 -24.18379 -23.75352 -22.87343 -21.42930 -19.95638 -19.55515 -18.77931 -17.60865 -17.44982 -16.44305 -16.38399 -16.22758 -15.68751 -15.06752 -14.87811 -14.54418 -14.45050 -14.24443 -13.93810 -13.60234 -13.42765 -13.29862 -13.22159 -12.86461 -12.47940 -12.26622 -12.17127 -12.11310 -11.99668 -11.79630 -11.74789 -11.70138 -11.46449 -11.28702 -11.14134 -10.89729 -10.72773 -10.68721 -10.49527 -10.37708 -10.09395 -9.82139 -9.61139 -9.33870 -8.96056 -8.64061 -8.34486 -5.99023 -4.00811 0.12856 2.57804 3.30626 3.38593 3.41312 3.43392 3.71215 3.79272 3.96361 4.34006 4.39060 4.45920 4.58286 4.59208 4.80388 4.83333 4.93711 4.96119 5.07186 5.11852 5.27499 5.31726 5.34372 5.36041 5.42585 5.44977 5.52043 5.56443 5.63033 5.69322 5.77550 5.81705 5.86148 5.99380 6.12708 6.42493 6.43135 6.69000 6.70638 6.79894 7.01819 7.05270 7.15017 7.68498 7.83839 8.01243 8.43558 9.06031 9.62947 11.12326 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.002913 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.027922 B = 9610.194796 C =10104.158821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.096 3.904 3 H 0.109 0.891 4 C -0.139 4.139 5 C -0.598 4.598 6 H 0.137 0.863 7 S 2.608 3.392 8 O -0.956 6.956 9 O -0.950 6.950 10 N -0.992 5.992 11 C 0.116 3.884 12 C -0.116 4.116 13 C -0.078 4.078 14 C 0.026 3.974 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.126 4.126 24 C 0.119 3.881 25 C -0.140 4.140 26 C 0.065 3.935 27 O -0.374 6.374 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.258 22.301 11.279 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.038 3.962 3 H 0.127 0.873 4 C -0.178 4.178 5 C -0.706 4.706 6 H 0.155 0.845 7 S 2.701 3.299 8 O -0.946 6.946 9 O -0.940 6.940 10 N -0.831 5.831 11 C -0.008 4.008 12 C -0.155 4.155 13 C -0.097 4.097 14 C -0.011 4.011 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.165 4.165 24 C -0.006 4.006 25 C -0.178 4.178 26 C -0.012 4.012 27 O -0.293 6.293 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.586 22.572 10.580 25.186 hybrid contribution -0.308 -1.082 0.726 1.339 sum -3.894 21.491 11.306 24.594 Atomic orbital electron populations 1.22490 0.96097 1.03016 1.03108 1.22042 0.93658 0.96228 0.84294 0.87324 1.22037 1.02802 0.91953 1.00971 1.30690 1.12902 1.08434 1.18564 0.84526 1.05210 0.74820 0.73877 0.75944 1.93574 1.78876 1.81102 1.41069 1.93580 1.28343 1.84904 1.87155 1.57588 1.32180 1.25643 1.67712 1.21578 0.94887 0.89903 0.94478 1.21770 0.98895 0.95322 0.99534 1.21151 0.94600 0.95570 0.98374 1.19141 0.96978 0.90300 0.94696 1.21278 1.42460 0.95910 0.95655 0.92531 1.25029 0.95884 0.98735 0.94891 1.69973 1.49004 1.23284 1.11234 0.86593 0.78687 0.82363 0.80674 1.19762 1.21152 1.21102 1.21964 1.01460 0.94642 0.98480 1.21524 0.83422 0.98918 0.96712 1.22009 1.03073 1.00148 0.92580 1.22511 0.98988 0.82027 0.97715 1.88006 1.73692 1.24761 1.42802 0.91488 0.91122 0.91718 0.89422 0.89297 0.89618 0.91809 0.89747 0.92168 0.92392 0.96628 0.96583 0.93122 0.91176 0.91868 0.91771 0.89812 0.89118 0.88976 0.88167 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 8.65 37.16 0.32 -0.85 16 2 C 0.10 0.72 3.91 -26.68 -0.10 0.61 16 3 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.14 -1.13 4.93 -26.59 -0.13 -1.27 16 5 C -0.60 -5.21 2.64 -26.55 -0.07 -5.28 16 6 H 0.14 0.94 6.62 -51.93 -0.34 0.60 16 7 S 2.61 33.36 4.90 -107.50 -0.53 32.83 16 8 O -0.96 -14.81 16.59 -57.54 -0.95 -15.76 16 9 O -0.95 -14.93 16.39 -57.54 -0.94 -15.87 16 10 N -0.99 -12.99 3.03 -113.77 -0.35 -13.33 16 11 C 0.12 1.58 5.42 -3.93 -0.02 1.56 16 12 C -0.12 -2.07 5.17 -26.83 -0.14 -2.21 16 13 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 14 C 0.03 0.64 4.45 -27.89 -0.12 0.52 16 15 C -0.51 -13.96 8.39 -34.44 -0.29 -14.25 16 16 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.13 -2.07 5.36 -26.61 -0.14 -2.22 16 24 C 0.12 1.54 6.43 -3.71 -0.02 1.52 16 25 C -0.14 -1.14 5.13 -26.59 -0.14 -1.27 16 26 C 0.07 0.49 6.52 37.20 0.24 0.73 16 27 O -0.37 -3.44 10.60 -35.23 -0.37 -3.81 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 4.97 -51.93 -0.26 0.14 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.11 6.85 -51.93 -0.36 0.75 16 34 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 35 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.01 6.86 -51.93 -0.36 0.65 16 45 H 0.09 0.81 8.02 -51.93 -0.42 0.39 16 46 H 0.09 0.65 6.88 -51.93 -0.36 0.29 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.37 6.34 -51.93 -0.33 0.04 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -34.12 372.74 -10.90 -45.02 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.19 Total: -2.41 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -0.91 Total: -22.63 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.39 Total: -39.30 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -2.27 Total: -35.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 33.36 SS G_CDS: -0.53 Total: 32.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.12 -10.90 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.151 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds