Wall clock time and date at job start Tue Mar 31 2020 17:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.49329 * 2 1 4 4 C 1.53098 * 109.48002 * 239.97173 * 2 1 3 5 5 C 1.53180 * 109.16075 * 297.62693 * 4 2 1 6 6 H 1.08999 * 109.54515 * 62.88494 * 5 4 2 7 7 S 1.81404 * 109.54204 * 183.15137 * 5 4 2 8 8 O 1.42099 * 110.53962 * 291.18248 * 7 5 4 9 9 O 1.42106 * 110.54296 * 67.93009 * 7 5 4 10 10 N 1.65593 * 104.45024 * 179.55256 * 7 5 4 11 11 C 1.46927 * 120.63313 * 269.71890 * 10 7 5 12 12 C 1.52761 * 109.00733 * 233.58444 * 11 10 7 13 13 C 1.53037 * 109.38436 * 305.58366 * 12 11 10 14 14 C 1.52996 * 109.45879 * 181.25975 * 13 12 11 15 15 C 1.50698 * 109.47056 * 64.93853 * 14 13 12 16 16 H 1.07996 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00147 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99876 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47286 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46758 * 120.00286 * 19 17 15 22 22 H 1.48506 * 109.47135 * 239.99881 * 19 17 15 23 23 C 1.53047 * 109.53549 * 61.24607 * 13 12 11 24 24 C 1.46926 * 120.62929 * 90.00172 * 10 7 5 25 25 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 5 4 27 27 O 1.42905 * 109.48333 * 120.03200 * 2 1 3 28 28 H 1.09002 * 109.46833 * 299.96421 * 1 2 3 29 29 H 1.08999 * 109.47234 * 59.97208 * 1 2 3 30 30 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.52270 * 177.71938 * 4 2 1 32 32 H 1.08998 * 109.51931 * 57.52860 * 4 2 1 33 33 H 1.08996 * 109.58404 * 353.42009 * 11 10 7 34 34 H 1.09002 * 109.58681 * 113.84579 * 11 10 7 35 35 H 1.09005 * 109.55930 * 185.55348 * 12 11 10 36 36 H 1.08997 * 109.36128 * 65.50486 * 12 11 10 37 37 H 1.08991 * 109.45233 * 301.23104 * 13 12 11 38 38 H 1.09005 * 109.47226 * 184.93331 * 14 13 12 39 39 H 1.08996 * 109.47727 * 304.93587 * 14 13 12 40 40 H 0.97003 * 120.00342 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.49784 * 178.68260 * 23 13 12 42 42 H 1.08999 * 109.49494 * 58.58066 * 23 13 12 43 43 H 1.09001 * 109.58788 * 246.15460 * 24 10 7 44 44 H 1.08997 * 109.58941 * 6.43645 * 24 10 7 45 45 H 1.09004 * 109.52714 * 297.07587 * 25 5 4 46 46 H 1.09001 * 109.57654 * 176.92317 * 25 5 4 47 47 H 1.08997 * 109.48111 * 182.40965 * 26 25 5 48 48 H 1.09000 * 109.48212 * 62.37239 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2496 5 6 1.5756 -2.1814 -1.2122 6 1 0.4866 -2.2179 -1.2408 7 16 2.2526 -3.0708 -2.6409 8 8 1.6537 -2.6102 -3.8444 9 8 3.6633 -3.1978 -2.5266 10 7 1.6881 -4.6181 -2.4698 11 6 2.4628 -5.6194 -1.7243 12 6 2.6632 -6.8508 -2.6058 13 6 1.3029 -7.3485 -3.1000 14 6 1.4990 -8.6003 -3.9574 15 6 2.0461 -9.7142 -3.1025 16 1 2.2354 -9.5459 -2.0526 17 6 2.3049 -10.9481 -3.6605 18 7 2.0748 -11.1529 -4.9391 19 14 2.9837 -12.3286 -2.6008 20 1 3.1533 -11.8451 -1.2070 21 1 2.0389 -13.4742 -2.6154 22 1 4.2981 -12.7642 -3.1376 23 6 0.6320 -6.2570 -3.9372 24 6 0.4060 -5.0174 -3.0660 25 6 2.0764 -2.8322 0.0808 26 6 1.5645 -2.0285 1.2790 27 8 2.0066 -0.6743 1.1663 28 1 -0.3633 0.5133 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1297 -0.6874 -1.2710 32 1 1.6420 -0.2358 -2.1398 33 1 3.4333 -5.2034 -1.4540 34 1 1.9207 -5.9035 -0.8223 35 1 3.1506 -7.6370 -2.0292 36 1 3.2861 -6.5862 -3.4601 37 1 0.6719 -7.5894 -2.2446 38 1 0.5417 -8.9042 -4.3811 39 1 2.2001 -8.3828 -4.7631 40 1 2.2566 -12.0212 -5.3316 41 1 -0.3262 -6.6206 -4.3082 42 1 1.2741 -5.9979 -4.7790 43 1 -0.3074 -5.2513 -2.2757 44 1 0.0186 -4.2034 -3.6786 45 1 3.1664 -2.8401 0.0863 46 1 1.7046 -3.8550 0.1426 47 1 1.9531 -2.4622 2.2004 48 1 0.4750 -2.0551 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564907795.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:57 Heat of formation + Delta-G solvation = -162.752862 kcal Electronic energy + Delta-G solvation = -28176.960494 eV Core-core repulsion = 24357.056518 eV Total energy + Delta-G solvation = -3819.903976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.70199 -39.64197 -38.33209 -37.08143 -35.70998 -34.98372 -33.81975 -33.12625 -31.96513 -29.50121 -29.21208 -26.06697 -25.51778 -24.44797 -24.02675 -22.99066 -21.06601 -20.46148 -19.80078 -18.72817 -18.37822 -18.25616 -17.23161 -17.01639 -16.58346 -16.50721 -15.69164 -15.64423 -15.39227 -15.29052 -14.98235 -14.94061 -14.79992 -14.50132 -14.00463 -13.94403 -13.57719 -13.39816 -13.31250 -13.26560 -13.08716 -12.88764 -12.76819 -12.75115 -12.56911 -12.46775 -12.28817 -12.20861 -12.05994 -12.00371 -11.88263 -11.71070 -11.30354 -11.06983 -10.99021 -10.79630 -10.52029 -10.46418 -9.80361 -8.15683 -6.25095 -0.84424 1.40999 1.41882 1.54283 1.58311 2.43237 2.81093 2.92738 2.97588 3.18136 3.25360 3.52647 3.69576 3.84189 3.97209 4.07421 4.08122 4.10054 4.30966 4.35040 4.39046 4.41215 4.48789 4.51524 4.54521 4.58638 4.64099 4.74367 4.83817 4.85984 4.90717 4.97336 4.98939 5.02252 5.08501 5.14378 5.31128 5.34114 5.36847 5.40949 5.44792 5.59452 5.70027 5.85532 5.92607 6.27314 6.30806 6.92586 7.43688 8.96693 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.002913 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.027922 B = 9610.194796 C =10104.158821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.095 3.905 3 H 0.120 0.880 4 C -0.149 4.149 5 C -0.565 4.565 6 H 0.167 0.833 7 S 2.602 3.398 8 O -0.991 6.991 9 O -0.989 6.989 10 N -0.997 5.997 11 C 0.124 3.876 12 C -0.117 4.117 13 C -0.070 4.070 14 C 0.029 3.971 15 C -0.524 4.524 16 H 0.069 0.931 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.255 1.255 21 H -0.281 1.281 22 H -0.285 1.285 23 C -0.128 4.128 24 C 0.124 3.876 25 C -0.145 4.145 26 C 0.062 3.938 27 O -0.394 6.394 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.073 0.927 38 H -0.012 1.012 39 H -0.023 1.023 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 23.579 14.577 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.036 3.964 3 H 0.138 0.862 4 C -0.188 4.188 5 C -0.677 4.677 6 H 0.184 0.816 7 S 2.702 3.298 8 O -0.981 6.981 9 O -0.980 6.980 10 N -0.835 5.835 11 C -0.001 4.001 12 C -0.156 4.156 13 C -0.088 4.088 14 C -0.008 4.008 15 C -0.562 4.562 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.581 5.581 19 Si 0.786 3.214 20 H -0.179 1.179 21 H -0.207 1.207 22 H -0.211 1.211 23 C -0.167 4.167 24 C -0.001 4.001 25 C -0.184 4.184 26 C -0.015 4.015 27 O -0.313 6.313 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.007 0.993 39 H -0.005 1.005 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.964 23.832 13.842 28.003 hybrid contribution 0.136 -1.417 -0.333 1.462 sum -4.828 22.415 13.509 26.612 Atomic orbital electron populations 1.22501 0.94847 1.03483 1.03852 1.22175 0.94647 0.96455 0.83090 0.86250 1.22209 1.02603 0.91675 1.02317 1.30385 1.14167 1.07717 1.15465 0.81588 1.05192 0.73968 0.73909 0.76702 1.93524 1.78993 1.81439 1.44146 1.93526 1.31041 1.85425 1.87970 1.57491 1.32078 1.25908 1.67998 1.21516 0.96193 0.87922 0.94445 1.21704 0.97372 0.97306 0.99204 1.20995 0.96033 0.93760 0.98026 1.19064 0.94287 0.93054 0.94403 1.21727 1.41651 0.96427 0.96387 0.91287 1.26004 0.96374 1.01812 0.96154 1.70128 1.50587 1.24027 1.13323 0.85452 0.77638 0.78794 0.79485 1.17890 1.20710 1.21139 1.21928 1.00802 0.95828 0.98119 1.21566 0.83992 0.97162 0.97361 1.22141 1.02623 1.01294 0.92297 1.22667 1.00014 0.81179 0.97637 1.87992 1.74261 1.25616 1.43408 0.91122 0.90122 0.91327 0.90285 0.88099 0.89052 0.88135 0.90962 0.95069 0.90872 0.99320 1.00453 0.93117 0.90647 0.94493 0.87996 0.88701 0.90249 0.87227 0.87028 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 8.65 71.98 0.62 -1.00 16 2 C 0.09 1.12 3.91 30.63 0.12 1.24 16 3 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.15 -2.08 4.93 30.69 0.15 -1.93 16 5 C -0.56 -8.10 2.64 30.71 0.08 -8.02 16 6 H 0.17 1.50 6.62 -2.39 -0.02 1.48 16 7 S 2.60 63.56 4.90 -56.49 -0.28 63.29 16 8 O -0.99 -30.14 16.59 -127.65 -2.12 -32.25 16 9 O -0.99 -31.23 16.39 -127.65 -2.09 -33.32 16 10 N -1.00 -24.22 3.03 -513.85 -1.56 -25.78 16 11 C 0.12 3.14 5.42 86.22 0.47 3.60 16 12 C -0.12 -4.19 5.17 30.53 0.16 -4.03 16 13 C -0.07 -2.68 2.10 -10.77 -0.02 -2.70 16 14 C 0.03 1.51 4.45 29.85 0.13 1.65 16 15 C -0.52 -28.90 8.39 25.60 0.21 -28.68 16 16 H 0.07 3.56 7.05 -2.91 -0.02 3.53 16 17 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 18 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 19 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.13 -4.20 5.36 30.67 0.16 -4.04 16 24 C 0.12 2.91 6.43 86.36 0.56 3.46 16 25 C -0.14 -1.87 5.13 30.68 0.16 -1.71 16 26 C 0.06 0.70 6.52 72.01 0.47 1.17 16 27 O -0.39 -6.08 10.60 -148.98 -1.58 -7.66 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.53 4.97 -2.38 -0.01 0.52 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.24 6.85 -2.39 -0.02 2.23 16 34 H 0.10 1.87 7.85 -2.39 -0.02 1.85 16 35 H 0.07 2.72 6.91 -2.38 -0.02 2.70 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 39 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 2.07 6.86 -2.39 -0.02 2.05 16 45 H 0.08 1.24 8.02 -2.39 -0.02 1.22 16 46 H 0.11 1.05 6.88 -2.39 -0.02 1.03 16 47 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.60 6.34 -2.39 -0.02 0.59 16 Total: -1.00 -77.71 372.74 -0.65 -78.36 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.93 Total: 9.90 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 3.73 Total: -40.90 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.27 Total: -83.45 kcal Atomic # 8 Polarization: -67.45 SS G_CDS: -5.79 Total: -73.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 63.56 SS G_CDS: -0.28 Total: 63.29 kcal Total: -77.71 -0.65 -78.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907795.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.389 kcal (2) G-P(sol) polarization free energy of solvation -77.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds