Wall clock time and date at job start Tue Mar 31 2020 17:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.49204 * 2 1 4 4 C 1.53092 * 109.48257 * 239.97089 * 2 1 3 5 5 C 1.53175 * 109.16624 * 182.40881 * 4 2 1 6 6 H 1.09008 * 109.54123 * 297.02458 * 5 4 2 7 7 S 1.81394 * 109.54693 * 176.84956 * 5 4 2 8 8 O 1.42102 * 110.54525 * 73.37135 * 7 5 4 9 9 O 1.42104 * 110.53967 * 296.62268 * 7 5 4 10 10 N 1.65601 * 104.45240 * 185.00221 * 7 5 4 11 11 C 1.46919 * 120.63434 * 89.99545 * 10 7 5 12 12 C 1.53195 * 108.89273 * 126.34385 * 11 10 7 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.40818 * 178.68126 * 13 12 11 15 15 C 1.50701 * 109.46820 * 295.12331 * 14 13 12 16 16 H 1.07997 * 120.00460 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99620 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99962 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46989 * 90.00069 * 19 17 15 21 21 H 1.48500 * 109.47362 * 209.99965 * 19 17 15 22 22 H 1.48499 * 109.47212 * 330.00755 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62562 * 270.01620 * 10 7 5 25 25 C 1.53183 * 109.03786 * 56.97676 * 5 4 2 26 26 C 1.53090 * 109.16460 * 303.02488 * 25 5 4 27 27 O 1.42902 * 109.48107 * 120.02662 * 2 1 3 28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47431 * 300.02726 * 1 2 3 30 30 H 1.08998 * 109.47271 * 60.02674 * 1 2 3 31 31 H 1.09002 * 109.52060 * 62.50300 * 4 2 1 32 32 H 1.08995 * 109.57210 * 302.34408 * 4 2 1 33 33 H 1.09002 * 109.58751 * 246.20335 * 11 10 7 34 34 H 1.08996 * 109.58750 * 6.48520 * 11 10 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 36 36 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 37 37 H 1.09000 * 109.43268 * 58.76205 * 13 12 11 38 38 H 1.08993 * 109.46872 * 55.12281 * 14 13 12 39 39 H 1.09003 * 109.47360 * 175.12608 * 14 13 12 40 40 H 0.97006 * 120.00054 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 43 43 H 1.08994 * 109.58580 * 353.37875 * 24 10 7 44 44 H 1.09006 * 109.57831 * 113.65367 * 24 10 7 45 45 H 1.08999 * 109.51747 * 62.92830 * 25 5 4 46 46 H 1.09000 * 109.52306 * 183.11279 * 25 5 4 47 47 H 1.09007 * 109.47747 * 297.62048 * 26 25 5 48 48 H 1.08995 * 109.49085 * 177.59911 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7709 -1.2122 6 1 3.9689 0.2435 -1.2424 7 16 4.1836 -1.7058 -2.6408 8 8 4.0448 -0.9437 -3.8322 9 8 3.7438 -3.0556 -2.5792 10 7 5.8199 -1.7983 -2.4035 11 6 6.4058 -2.9192 -1.6559 12 6 7.4970 -3.5699 -2.5119 13 6 8.5076 -2.4984 -2.9383 14 6 9.6182 -3.1479 -3.7664 15 6 10.3924 -4.1094 -2.9020 16 1 10.1199 -4.2435 -1.8656 17 6 11.4487 -4.8179 -3.4343 18 7 11.7809 -4.6543 -4.6962 19 14 12.4088 -6.0093 -2.3627 20 1 11.7885 -7.3563 -2.4416 21 1 13.8133 -6.0824 -2.8393 22 1 12.3876 -5.5364 -0.9552 23 6 7.8018 -1.4323 -3.7793 24 6 6.7134 -0.7605 -2.9361 25 6 4.0176 -1.4600 0.0810 26 6 3.4307 -0.7093 1.2791 27 8 2.0065 -0.6741 1.1664 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8902 31 1 1.7148 -0.1843 -2.1398 32 1 1.6443 -1.7374 -1.2720 33 1 6.8411 -2.5510 -0.7268 34 1 5.6316 -3.6528 -1.4311 35 1 8.0028 -4.3415 -1.9316 36 1 7.0460 -4.0172 -3.3977 37 1 8.9399 -2.0343 -2.0518 38 1 9.1780 -3.6869 -4.6052 39 1 10.2897 -2.3761 -4.1426 40 1 12.5238 -5.1530 -5.0708 41 1 7.3482 -1.8997 -4.6532 42 1 8.5260 -0.6840 -4.1015 43 1 6.1427 -0.0711 -3.5581 44 1 7.1718 -0.2147 -2.1114 45 1 3.6613 -2.4901 0.0864 46 1 5.1059 -1.4498 0.1421 47 1 3.8193 0.3090 1.2958 48 1 3.7100 -1.2200 2.2006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564907796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:02 Heat of formation + Delta-G solvation = -142.354021 kcal Electronic energy + Delta-G solvation = -27982.111346 eV Core-core repulsion = 24163.091930 eV Total energy + Delta-G solvation = -3819.019416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.83440 -38.32503 -37.23717 -35.98765 -34.33725 -33.95843 -33.18943 -31.93451 -30.72933 -28.34512 -27.68107 -25.09947 -24.17686 -23.11460 -22.77699 -21.46315 -20.88725 -19.60140 -18.63969 -17.57699 -16.98974 -16.73639 -16.35169 -16.20280 -15.73883 -15.28620 -14.75163 -14.55009 -14.49026 -14.12618 -13.91320 -13.60086 -13.30235 -13.22333 -13.04288 -12.81267 -12.46505 -12.37935 -12.25102 -12.14262 -11.99210 -11.79155 -11.71181 -11.63526 -11.44268 -11.42952 -11.14480 -10.91153 -10.73583 -10.68384 -10.60129 -10.37742 -10.11185 -9.82692 -9.60474 -9.33584 -8.96903 -8.64010 -8.33912 -5.98662 -4.00473 0.12123 2.56972 3.31764 3.34652 3.38494 3.40434 3.69287 3.79642 3.98354 4.31914 4.37141 4.46111 4.57977 4.68973 4.79056 4.84761 4.91680 5.01958 5.09968 5.15069 5.24809 5.32101 5.34340 5.36293 5.42597 5.47765 5.51830 5.54009 5.65471 5.69505 5.76248 5.80389 5.85155 5.99302 6.12789 6.42322 6.42962 6.68675 6.70813 6.81550 7.01770 7.05236 7.14890 7.68506 7.84010 8.01479 8.43769 9.06091 9.63142 11.12629 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.002832 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.743544 B = 9884.527724 C =10455.144232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.097 3.903 3 H 0.062 0.938 4 C -0.139 4.139 5 C -0.598 4.598 6 H 0.135 0.865 7 S 2.608 3.392 8 O -0.956 6.956 9 O -0.949 6.949 10 N -0.992 5.992 11 C 0.115 3.885 12 C -0.115 4.115 13 C -0.078 4.078 14 C 0.026 3.974 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.126 4.126 24 C 0.119 3.881 25 C -0.141 4.141 26 C 0.070 3.930 27 O -0.377 6.377 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.053 0.947 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.954 11.924 10.756 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.179 4.179 5 C -0.706 4.706 6 H 0.153 0.847 7 S 2.702 3.298 8 O -0.946 6.946 9 O -0.939 6.939 10 N -0.831 5.831 11 C -0.009 4.009 12 C -0.154 4.154 13 C -0.097 4.097 14 C -0.011 4.011 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.165 4.165 24 C -0.006 4.006 25 C -0.179 4.179 26 C -0.007 4.007 27 O -0.296 6.296 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.071 0.929 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.426 11.429 10.024 25.462 hybrid contribution 1.083 -0.174 0.789 1.351 sum -19.343 11.255 10.813 24.854 Atomic orbital electron populations 1.21808 0.92596 1.03406 1.02772 1.21962 0.95191 0.94816 0.84251 0.91989 1.22073 0.90888 1.03973 1.00917 1.30695 1.06056 1.15170 1.18683 0.84694 1.05200 0.73485 0.75208 0.75915 1.93576 1.85326 1.73862 1.41839 1.93580 1.80740 1.32512 1.87097 1.57591 1.23071 1.33206 1.69213 1.21668 0.97650 0.87128 0.94460 1.21896 0.95060 0.98702 0.99766 1.21204 0.95868 0.94154 0.98461 1.19139 0.91834 0.95241 0.94887 1.21238 1.14016 1.23258 0.96841 0.92597 1.25029 0.97413 0.97157 0.94939 1.69964 1.28821 1.42019 1.12682 0.86645 0.79327 0.81593 0.80710 1.20726 1.21352 1.19949 1.21957 0.96695 0.99173 0.98687 1.21530 0.92455 0.89058 0.97540 1.22039 1.02506 1.00786 0.92580 1.22487 0.80852 0.99602 0.97775 1.87947 1.21073 1.77958 1.42646 0.91430 0.91475 0.90785 0.89432 0.89266 0.91784 0.89653 0.89775 0.92143 0.92397 0.96593 0.96631 0.93071 0.91862 0.91166 0.89816 0.91744 0.89164 0.88808 0.92852 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.56 37.15 0.36 -0.59 16 2 C 0.10 0.76 3.26 -26.69 -0.09 0.67 16 3 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.14 -1.19 4.71 -26.59 -0.13 -1.31 16 5 C -0.60 -5.30 2.96 -26.55 -0.08 -5.38 16 6 H 0.13 0.93 8.14 -51.92 -0.42 0.51 16 7 S 2.61 33.56 4.91 -107.50 -0.53 33.03 16 8 O -0.96 -14.88 16.59 -57.54 -0.95 -15.84 16 9 O -0.95 -14.96 16.58 -57.54 -0.95 -15.91 16 10 N -0.99 -13.01 2.88 -113.52 -0.33 -13.33 16 11 C 0.12 1.57 5.34 -3.71 -0.02 1.55 16 12 C -0.12 -2.05 5.21 -26.45 -0.14 -2.18 16 13 C -0.08 -1.50 2.10 -90.42 -0.19 -1.69 16 14 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 15 C -0.52 -13.97 8.39 -34.44 -0.29 -14.26 16 16 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.13 -2.07 5.36 -26.62 -0.14 -2.21 16 24 C 0.12 1.54 6.43 -3.71 -0.02 1.52 16 25 C -0.14 -1.16 4.98 -26.59 -0.13 -1.29 16 26 C 0.07 0.54 6.84 37.20 0.25 0.79 16 27 O -0.38 -3.57 10.41 -35.23 -0.37 -3.94 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.73 7.73 -51.93 -0.40 0.33 16 34 H 0.09 1.10 6.86 -51.93 -0.36 0.75 16 35 H 0.08 1.57 6.93 -51.93 -0.36 1.21 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 43 H 0.08 1.01 6.86 -51.93 -0.36 0.66 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.67 6.71 -51.93 -0.35 0.32 16 47 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -34.12 379.45 -11.05 -45.17 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -8.51 Total: -2.85 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -0.84 Total: -22.40 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.41 Total: -39.31 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -2.27 Total: -35.69 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 33.56 SS G_CDS: -0.53 Total: 33.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.12 -11.05 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.182 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds