Wall clock time and date at job start Tue Mar 31 2020 17:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.49204 * 2 1 4 4 C 1.53092 * 109.48257 * 239.97089 * 2 1 3 5 5 C 1.53175 * 109.16624 * 182.40881 * 4 2 1 6 6 H 1.09008 * 109.54123 * 297.02458 * 5 4 2 7 7 S 1.81394 * 109.54693 * 176.84956 * 5 4 2 8 8 O 1.42102 * 110.54525 * 73.37135 * 7 5 4 9 9 O 1.42104 * 110.53967 * 296.62268 * 7 5 4 10 10 N 1.65601 * 104.45240 * 185.00221 * 7 5 4 11 11 C 1.46919 * 120.63434 * 89.99545 * 10 7 5 12 12 C 1.53195 * 108.89273 * 126.34385 * 11 10 7 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.40818 * 178.68126 * 13 12 11 15 15 C 1.50701 * 109.46820 * 295.12331 * 14 13 12 16 16 H 1.07997 * 120.00460 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99620 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99962 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46989 * 90.00069 * 19 17 15 21 21 H 1.48500 * 109.47362 * 209.99965 * 19 17 15 22 22 H 1.48499 * 109.47212 * 330.00755 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62562 * 270.01620 * 10 7 5 25 25 C 1.53183 * 109.03786 * 56.97676 * 5 4 2 26 26 C 1.53090 * 109.16460 * 303.02488 * 25 5 4 27 27 O 1.42902 * 109.48107 * 120.02662 * 2 1 3 28 28 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47431 * 300.02726 * 1 2 3 30 30 H 1.08998 * 109.47271 * 60.02674 * 1 2 3 31 31 H 1.09002 * 109.52060 * 62.50300 * 4 2 1 32 32 H 1.08995 * 109.57210 * 302.34408 * 4 2 1 33 33 H 1.09002 * 109.58751 * 246.20335 * 11 10 7 34 34 H 1.08996 * 109.58750 * 6.48520 * 11 10 7 35 35 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 36 36 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 37 37 H 1.09000 * 109.43268 * 58.76205 * 13 12 11 38 38 H 1.08993 * 109.46872 * 55.12281 * 14 13 12 39 39 H 1.09003 * 109.47360 * 175.12608 * 14 13 12 40 40 H 0.97006 * 120.00054 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 43 43 H 1.08994 * 109.58580 * 353.37875 * 24 10 7 44 44 H 1.09006 * 109.57831 * 113.65367 * 24 10 7 45 45 H 1.08999 * 109.51747 * 62.92830 * 25 5 4 46 46 H 1.09000 * 109.52306 * 183.11279 * 25 5 4 47 47 H 1.09007 * 109.47747 * 297.62048 * 26 25 5 48 48 H 1.08995 * 109.49085 * 177.59911 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7709 -1.2122 6 1 3.9689 0.2435 -1.2424 7 16 4.1836 -1.7058 -2.6408 8 8 4.0448 -0.9437 -3.8322 9 8 3.7438 -3.0556 -2.5792 10 7 5.8199 -1.7983 -2.4035 11 6 6.4058 -2.9192 -1.6559 12 6 7.4970 -3.5699 -2.5119 13 6 8.5076 -2.4984 -2.9383 14 6 9.6182 -3.1479 -3.7664 15 6 10.3924 -4.1094 -2.9020 16 1 10.1199 -4.2435 -1.8656 17 6 11.4487 -4.8179 -3.4343 18 7 11.7809 -4.6543 -4.6962 19 14 12.4088 -6.0093 -2.3627 20 1 11.7885 -7.3563 -2.4416 21 1 13.8133 -6.0824 -2.8393 22 1 12.3876 -5.5364 -0.9552 23 6 7.8018 -1.4323 -3.7793 24 6 6.7134 -0.7605 -2.9361 25 6 4.0176 -1.4600 0.0810 26 6 3.4307 -0.7093 1.2791 27 8 2.0065 -0.6741 1.1664 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8902 31 1 1.7148 -0.1843 -2.1398 32 1 1.6443 -1.7374 -1.2720 33 1 6.8411 -2.5510 -0.7268 34 1 5.6316 -3.6528 -1.4311 35 1 8.0028 -4.3415 -1.9316 36 1 7.0460 -4.0172 -3.3977 37 1 8.9399 -2.0343 -2.0518 38 1 9.1780 -3.6869 -4.6052 39 1 10.2897 -2.3761 -4.1426 40 1 12.5238 -5.1530 -5.0708 41 1 7.3482 -1.8997 -4.6532 42 1 8.5260 -0.6840 -4.1015 43 1 6.1427 -0.0711 -3.5581 44 1 7.1718 -0.2147 -2.1114 45 1 3.6613 -2.4901 0.0864 46 1 5.1059 -1.4498 0.1421 47 1 3.8193 0.3090 1.2958 48 1 3.7100 -1.2200 2.2006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564907796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:01 Heat of formation + Delta-G solvation = -165.678788 kcal Electronic energy + Delta-G solvation = -27983.122784 eV Core-core repulsion = 24163.091930 eV Total energy + Delta-G solvation = -3820.030854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43695 -39.61410 -38.33478 -37.09065 -35.71526 -34.96496 -33.91600 -33.59239 -31.94826 -29.49191 -28.89434 -26.08311 -25.57208 -24.24598 -23.50025 -22.99478 -21.55662 -20.98664 -19.72882 -18.68808 -18.36780 -17.84586 -17.35080 -17.16189 -16.54052 -16.51941 -15.95390 -15.49082 -15.42263 -15.28977 -15.05791 -14.79063 -14.72495 -14.52494 -13.99890 -13.62833 -13.54723 -13.32598 -13.32029 -13.27136 -13.07876 -12.95635 -12.90655 -12.79234 -12.60342 -12.45782 -12.24491 -12.16231 -12.13157 -11.98208 -11.95500 -11.73533 -11.30797 -11.21714 -10.98281 -10.80163 -10.51293 -10.48613 -9.80569 -8.15390 -6.24810 -0.85386 1.41560 1.42624 1.53099 1.57412 2.43388 2.79528 2.83754 2.97545 3.18281 3.24399 3.52174 3.69808 3.78572 3.96754 4.08067 4.10146 4.16841 4.26828 4.31004 4.38115 4.43365 4.48425 4.52214 4.56629 4.60667 4.65366 4.73385 4.83176 4.85488 4.90480 4.97137 4.98005 5.01544 5.07377 5.12189 5.30342 5.31315 5.37025 5.40962 5.44667 5.59458 5.69919 5.85386 5.92758 6.27923 6.30914 6.92589 7.43815 8.96743 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.002832 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.743544 B = 9884.527724 C =10455.144232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.095 3.905 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.565 4.565 6 H 0.168 0.832 7 S 2.603 3.397 8 O -0.991 6.991 9 O -0.989 6.989 10 N -0.996 5.996 11 C 0.124 3.876 12 C -0.116 4.116 13 C -0.069 4.069 14 C 0.029 3.971 15 C -0.525 4.525 16 H 0.069 0.931 17 C -0.007 4.007 18 N -0.939 5.939 19 Si 0.962 3.038 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.257 1.257 23 C -0.127 4.127 24 C 0.124 3.876 25 C -0.146 4.146 26 C 0.067 3.933 27 O -0.398 6.398 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.073 0.927 38 H -0.023 1.023 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.071 0.929 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 13.696 14.045 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.097 0.903 4 C -0.189 4.189 5 C -0.678 4.678 6 H 0.185 0.815 7 S 2.703 3.297 8 O -0.981 6.981 9 O -0.979 6.979 10 N -0.834 5.834 11 C -0.001 4.001 12 C -0.155 4.155 13 C -0.088 4.088 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.087 0.913 17 C -0.204 4.204 18 N -0.580 5.580 19 Si 0.787 3.213 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.181 1.181 23 C -0.167 4.167 24 C -0.001 4.001 25 C -0.185 4.185 26 C -0.010 4.010 27 O -0.317 6.317 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.091 0.909 38 H -0.005 1.005 39 H 0.007 0.993 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.090 0.910 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.191 13.177 13.276 28.266 hybrid contribution 1.270 -0.709 -0.267 1.479 sum -19.921 12.468 13.009 26.861 Atomic orbital electron populations 1.21857 0.91913 1.03201 1.03792 1.22102 0.95884 0.95244 0.83150 0.90293 1.22244 0.90468 1.03940 1.02265 1.30389 1.06221 1.15567 1.15588 0.81480 1.05168 0.73196 0.74659 0.76691 1.93526 1.85602 1.74056 1.44918 1.93526 1.81153 1.35283 1.87976 1.57488 1.23251 1.33234 1.69472 1.21603 0.96400 0.87490 0.94606 1.21830 0.96077 0.98325 0.99303 1.21044 0.94548 0.94955 0.98213 1.19066 0.93093 0.94243 0.94421 1.21693 1.13854 1.23140 0.97567 0.91313 1.26009 0.98828 0.99281 0.96255 1.70122 1.29637 1.43478 1.14782 0.85497 0.77410 0.78986 0.79448 1.20291 1.21314 1.18095 1.21921 0.97953 0.98626 0.98150 1.21572 0.91356 0.88757 0.98387 1.22173 1.03738 1.00269 0.92282 1.22658 0.79976 1.00661 0.97719 1.87938 1.22235 1.78331 1.43204 0.92291 0.91027 0.89234 0.88136 0.90367 0.88087 0.89108 0.90969 0.95058 0.90883 1.00475 0.99322 0.93125 0.94491 0.90642 0.88719 0.87940 0.90311 0.87005 0.91030 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.56 71.98 0.69 -0.89 16 2 C 0.09 1.20 3.26 30.62 0.10 1.30 16 3 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.15 -2.18 4.71 30.68 0.14 -2.03 16 5 C -0.56 -8.15 2.96 30.71 0.09 -8.06 16 6 H 0.17 1.44 8.14 -2.39 -0.02 1.42 16 7 S 2.60 63.77 4.91 -56.49 -0.28 63.50 16 8 O -0.99 -30.22 16.59 -127.65 -2.12 -32.34 16 9 O -0.99 -31.33 16.58 -127.65 -2.12 -33.45 16 10 N -1.00 -24.21 2.88 -513.07 -1.48 -25.69 16 11 C 0.12 3.13 5.34 86.36 0.46 3.59 16 12 C -0.12 -4.17 5.21 30.78 0.16 -4.01 16 13 C -0.07 -2.65 2.10 -10.67 -0.02 -2.68 16 14 C 0.03 1.51 4.45 29.85 0.13 1.64 16 15 C -0.52 -28.94 8.39 25.60 0.21 -28.73 16 16 H 0.07 3.54 7.06 -2.91 -0.02 3.52 16 17 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 18 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 19 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 C -0.13 -4.19 5.36 30.67 0.16 -4.02 16 24 C 0.12 2.90 6.43 86.36 0.56 3.46 16 25 C -0.15 -1.88 4.98 30.69 0.15 -1.73 16 26 C 0.07 0.76 6.84 72.01 0.49 1.25 16 27 O -0.40 -6.34 10.41 -148.98 -1.55 -7.89 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.87 7.73 -2.39 -0.02 1.85 16 34 H 0.09 2.23 6.86 -2.39 -0.02 2.21 16 35 H 0.07 2.71 6.93 -2.39 -0.02 2.69 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.09 2.06 6.86 -2.39 -0.02 2.05 16 44 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.11 1.05 6.71 -2.39 -0.02 1.04 16 47 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 48 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -77.91 379.45 -0.52 -78.42 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.92 Total: 9.89 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 3.80 Total: -40.84 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.19 Total: -83.36 kcal Atomic # 8 Polarization: -67.89 SS G_CDS: -5.78 Total: -73.68 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 63.77 SS G_CDS: -0.28 Total: 63.50 kcal Total: -77.91 -0.52 -78.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564907796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.257 kcal (2) G-P(sol) polarization free energy of solvation -77.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds