Wall clock time and date at job start Tue Mar 31 2020 16:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46820 * 2 1 4 4 N 1.46500 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00432 * 269.99868 * 4 3 2 6 6 O 1.21285 * 120.00163 * 179.97438 * 5 4 3 7 7 C 1.50696 * 120.00173 * 0.02562 * 5 4 3 8 8 C 1.52996 * 109.47323 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47310 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47620 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47271 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00025 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99827 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99865 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99811 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47195 * 90.00041 * 15 13 11 17 17 H 1.48499 * 109.46913 * 210.00027 * 15 13 11 18 18 H 1.48504 * 109.47346 * 329.99382 * 15 13 11 19 19 C 1.46506 * 119.99607 * 90.00562 * 4 3 2 20 20 H 1.09004 * 109.63829 * 359.56922 * 19 4 3 21 21 C 1.53868 * 109.53705 * 239.20558 * 19 4 3 22 22 C 1.55052 * 106.62404 * 193.03029 * 21 19 4 23 23 S 1.83290 * 102.56449 * 42.43392 * 22 21 19 24 24 O 1.42102 * 109.35158 * 90.18877 * 23 22 21 25 25 O 1.42100 * 109.35207 * 223.25546 * 23 22 21 26 26 C 1.54170 * 109.64741 * 119.99356 * 19 4 3 27 27 H 1.08996 * 109.47501 * 299.99735 * 1 2 3 28 28 H 1.08996 * 109.47014 * 59.99997 * 1 2 3 29 29 H 1.09006 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47501 * 240.00265 * 2 1 3 31 31 H 1.09004 * 109.47284 * 119.99982 * 2 1 3 32 32 H 1.09006 * 109.46612 * 60.00385 * 3 2 1 33 33 H 1.08991 * 109.47342 * 300.00310 * 3 2 1 34 34 H 1.09004 * 109.47291 * 299.99940 * 7 5 4 35 35 H 1.09004 * 109.47317 * 59.99174 * 7 5 4 36 36 H 1.09000 * 109.47584 * 300.00033 * 8 7 5 37 37 H 1.08999 * 109.46828 * 60.00310 * 8 7 5 38 38 H 1.09011 * 109.47172 * 300.00125 * 9 8 7 39 39 H 1.09004 * 109.47307 * 59.99773 * 9 8 7 40 40 H 1.08998 * 109.46477 * 300.00365 * 10 9 8 41 41 H 1.09002 * 109.46812 * 59.99543 * 10 9 8 42 42 H 0.96998 * 119.99745 * 180.02562 * 14 13 11 43 43 H 1.09005 * 110.02820 * 73.74065 * 21 19 4 44 44 H 1.09000 * 110.03297 * 312.32067 * 21 19 4 45 45 H 1.08998 * 110.79137 * 284.16442 * 22 21 19 46 46 H 1.08997 * 110.78886 * 160.70637 * 22 21 19 47 47 H 1.09003 * 110.31575 * 28.72887 * 26 19 4 48 48 H 1.08996 * 110.40451 * 266.57956 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.4427 1.1680 6 8 5.3912 1.4423 1.1685 7 6 3.4245 1.4424 2.4728 8 6 4.4183 1.4421 3.6361 9 6 3.6529 1.4424 4.9609 10 6 4.6466 1.4427 6.1242 11 6 3.8927 1.4436 7.4289 12 1 2.8127 1.4435 7.4285 13 6 4.5817 1.4435 8.6233 14 7 3.9237 1.4438 9.7620 15 14 6.4496 1.4429 8.6239 16 1 6.9451 2.8428 8.6240 17 1 6.9440 0.7428 9.8366 18 1 6.9449 0.7425 7.4117 19 6 4.2379 1.4425 -1.2679 20 1 3.5323 1.4347 -2.0987 21 6 5.1381 0.1968 -1.3420 22 6 6.1147 0.4250 -2.5245 23 16 6.5947 2.1811 -2.3121 24 8 7.7477 2.2574 -1.4851 25 8 6.5872 2.8276 -3.5775 26 6 5.1257 2.7000 -1.3537 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 2.7975 2.3322 2.5305 35 1 2.7980 0.5522 2.5303 36 1 5.0450 0.5521 3.5784 37 1 5.0449 2.3321 3.5788 38 1 3.0264 2.3326 5.0184 39 1 3.0258 0.5526 5.0184 40 1 5.2733 0.5527 6.0668 41 1 5.2733 2.3327 6.0664 42 1 4.4084 1.4441 10.6022 43 1 4.5326 -0.6911 -1.5239 44 1 5.6969 0.0842 -0.4129 45 1 5.6091 0.2747 -3.4783 46 1 6.9842 -0.2268 -2.4394 47 1 5.4202 3.0241 -0.3555 48 1 4.5997 3.5019 -1.8715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588271247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:43 Heat of formation + Delta-G solvation = -125.823290 kcal Electronic energy + Delta-G solvation = -27099.489228 eV Core-core repulsion = 23281.186639 eV Total energy + Delta-G solvation = -3818.302590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74556 -37.30733 -37.16760 -36.29218 -35.82849 -34.91618 -32.78228 -32.53754 -30.50547 -29.69606 -26.62927 -26.43790 -25.01893 -23.00968 -21.98442 -21.47471 -20.06632 -19.18641 -19.02865 -17.66798 -17.32541 -16.70652 -16.43417 -16.17511 -15.94409 -15.77526 -15.06545 -14.65417 -14.50843 -14.37174 -14.20081 -13.99757 -13.66649 -13.32832 -12.84241 -12.77224 -12.68261 -12.56752 -12.43596 -12.29478 -12.23750 -12.13201 -12.06315 -11.88837 -11.71721 -11.71128 -11.27506 -11.09721 -11.01767 -10.75865 -10.67458 -10.54149 -9.95392 -9.81745 -9.66689 -9.44107 -9.13628 -9.12512 -8.50303 -6.01693 -3.99279 -0.29492 2.12651 2.40174 2.59566 3.25686 3.35232 3.42398 3.48278 3.66880 3.89731 4.08890 4.15792 4.31010 4.41883 4.46232 4.49443 4.53410 4.61322 4.85759 4.93616 4.97706 5.06615 5.10755 5.16426 5.21157 5.25490 5.33220 5.34009 5.40758 5.55066 5.59936 5.64987 5.70926 5.88126 5.97774 6.06969 6.16273 6.37069 6.64243 6.77648 6.95039 7.01529 7.36204 7.48974 7.83511 7.94894 8.56837 9.03091 9.61787 11.11789 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.002800 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.431042 B = 9998.799368 C =11780.101452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.106 3.894 4 N -0.612 5.612 5 C 0.514 3.486 6 O -0.525 6.525 7 C -0.139 4.139 8 C -0.108 4.108 9 C -0.102 4.102 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.163 3.837 20 H 0.107 0.893 21 C -0.141 4.141 22 C -0.584 4.584 23 S 2.394 3.606 24 O -0.923 6.923 25 O -0.944 6.944 26 C -0.612 4.612 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.153 0.847 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 -2.463 -30.069 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.017 4.017 4 N -0.345 5.345 5 C 0.304 3.696 6 O -0.401 6.401 7 C -0.178 4.178 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.053 4.053 11 C -0.558 4.558 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.189 1.189 19 C 0.057 3.943 20 H 0.125 0.875 21 C -0.180 4.180 22 C -0.714 4.714 23 S 2.576 3.424 24 O -0.920 6.920 25 O -0.941 6.941 26 C -0.742 4.742 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.171 0.829 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.973 -1.935 -30.166 30.488 hybrid contribution 0.066 -0.420 0.387 0.575 sum -3.906 -2.355 -29.780 30.127 Atomic orbital electron populations 1.21709 0.94760 1.02311 1.02166 1.22008 0.96534 0.96865 1.03031 1.21812 0.78466 0.97431 1.04012 1.48095 1.06790 1.74831 1.04823 1.21198 0.88330 0.74680 0.85420 1.90700 1.13932 1.48113 1.87316 1.21864 1.00094 1.04180 0.91703 1.21515 0.97144 1.03042 0.92884 1.21469 0.98638 1.00866 0.92958 1.19571 0.95297 0.96337 0.94056 1.21174 0.94992 1.50597 0.89020 0.91138 1.25043 0.98419 0.94578 0.95551 1.69919 1.35759 1.51433 0.97417 0.86777 0.86285 0.78584 0.77671 1.20292 1.21452 1.18884 1.21304 0.94046 0.90872 0.88055 0.87473 1.22701 0.97705 0.99026 0.98610 1.30556 1.10002 1.24404 1.06482 1.08931 0.77956 0.79475 0.76054 1.93662 1.44417 1.85317 1.68652 1.93608 1.87204 1.73125 1.40122 1.30970 1.18861 1.06943 1.17394 0.92108 0.92628 0.92268 0.91675 0.91126 0.89325 0.90118 0.88919 0.88836 0.91677 0.91692 0.92916 0.92884 0.96623 0.97052 0.92802 0.88448 0.87030 0.84576 0.84185 0.82890 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.15 -0.73 6.26 -26.73 -0.17 -0.90 16 3 C 0.11 0.55 5.18 -4.04 -0.02 0.53 16 4 N -0.61 -4.71 2.44 -164.89 -0.40 -5.12 16 5 C 0.51 5.83 6.83 -10.99 -0.08 5.76 16 6 O -0.52 -7.74 12.39 5.55 0.07 -7.67 16 7 C -0.14 -1.57 4.25 -27.89 -0.12 -1.69 16 8 C -0.11 -1.71 4.50 -26.73 -0.12 -1.83 16 9 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 10 C -0.02 -0.37 4.04 -27.89 -0.11 -0.48 16 11 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.26 13.96 55.43 0.77 -27.48 16 15 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 18 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 19 C 0.16 1.05 2.98 -66.86 -0.20 0.85 16 20 H 0.11 0.34 7.81 -51.93 -0.41 -0.07 16 21 C -0.14 -0.95 5.79 -25.19 -0.15 -1.10 16 22 C -0.58 -3.25 7.31 38.24 0.28 -2.97 16 23 S 2.39 21.26 6.10 -107.50 -0.66 20.60 16 24 O -0.92 -12.76 18.15 -57.73 -1.05 -13.81 16 25 O -0.94 -10.69 18.15 -57.73 -1.05 -11.74 16 26 C -0.61 -4.62 6.54 37.77 0.25 -4.37 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.45 7.22 -51.93 -0.37 0.07 16 32 H 0.09 0.45 6.44 -51.93 -0.33 0.12 16 33 H 0.08 0.27 7.93 -51.93 -0.41 -0.14 16 34 H 0.09 0.91 7.40 -51.93 -0.38 0.52 16 35 H 0.09 0.91 7.19 -51.93 -0.37 0.54 16 36 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 38 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.11 1.08 5.94 -51.93 -0.31 0.77 16 45 H 0.14 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.15 1.54 6.14 -51.93 -0.32 1.22 16 48 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -38.75 388.05 -10.10 -48.85 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -8.33 Total: -5.05 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.63 Total: -22.07 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.37 Total: -32.60 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.03 Total: -33.21 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Atomic # 16 Polarization: 21.26 SS G_CDS: -0.66 Total: 20.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.75 -10.10 -48.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588271247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.976 kcal (2) G-P(sol) polarization free energy of solvation -38.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds