Wall clock time and date at job start Tue Mar 31 2020 16:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46820 * 2 1 4 4 N 1.46500 * 109.46793 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00432 * 269.99868 * 4 3 2 6 6 O 1.21285 * 120.00163 * 179.97438 * 5 4 3 7 7 C 1.50696 * 120.00173 * 0.02562 * 5 4 3 8 8 C 1.52996 * 109.47323 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47310 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47620 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47271 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00025 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99827 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99865 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99811 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47195 * 90.00041 * 15 13 11 17 17 H 1.48499 * 109.46913 * 210.00027 * 15 13 11 18 18 H 1.48504 * 109.47346 * 329.99382 * 15 13 11 19 19 C 1.46506 * 119.99607 * 90.00562 * 4 3 2 20 20 H 1.09004 * 109.63829 * 359.56922 * 19 4 3 21 21 C 1.53868 * 109.53705 * 239.20558 * 19 4 3 22 22 C 1.55052 * 106.62404 * 193.03029 * 21 19 4 23 23 S 1.83290 * 102.56449 * 42.43392 * 22 21 19 24 24 O 1.42102 * 109.35158 * 90.18877 * 23 22 21 25 25 O 1.42100 * 109.35207 * 223.25546 * 23 22 21 26 26 C 1.54170 * 109.64741 * 119.99356 * 19 4 3 27 27 H 1.08996 * 109.47501 * 299.99735 * 1 2 3 28 28 H 1.08996 * 109.47014 * 59.99997 * 1 2 3 29 29 H 1.09006 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47501 * 240.00265 * 2 1 3 31 31 H 1.09004 * 109.47284 * 119.99982 * 2 1 3 32 32 H 1.09006 * 109.46612 * 60.00385 * 3 2 1 33 33 H 1.08991 * 109.47342 * 300.00310 * 3 2 1 34 34 H 1.09004 * 109.47291 * 299.99940 * 7 5 4 35 35 H 1.09004 * 109.47317 * 59.99174 * 7 5 4 36 36 H 1.09000 * 109.47584 * 300.00033 * 8 7 5 37 37 H 1.08999 * 109.46828 * 60.00310 * 8 7 5 38 38 H 1.09011 * 109.47172 * 300.00125 * 9 8 7 39 39 H 1.09004 * 109.47307 * 59.99773 * 9 8 7 40 40 H 1.08998 * 109.46477 * 300.00365 * 10 9 8 41 41 H 1.09002 * 109.46812 * 59.99543 * 10 9 8 42 42 H 0.96998 * 119.99745 * 180.02562 * 14 13 11 43 43 H 1.09005 * 110.02820 * 73.74065 * 21 19 4 44 44 H 1.09000 * 110.03297 * 312.32067 * 21 19 4 45 45 H 1.08998 * 110.79137 * 284.16442 * 22 21 19 46 46 H 1.08997 * 110.78886 * 160.70637 * 22 21 19 47 47 H 1.09003 * 110.31575 * 28.72887 * 26 19 4 48 48 H 1.08996 * 110.40451 * 266.57956 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1784 1.4427 1.1680 6 8 5.3912 1.4423 1.1685 7 6 3.4245 1.4424 2.4728 8 6 4.4183 1.4421 3.6361 9 6 3.6529 1.4424 4.9609 10 6 4.6466 1.4427 6.1242 11 6 3.8927 1.4436 7.4289 12 1 2.8127 1.4435 7.4285 13 6 4.5817 1.4435 8.6233 14 7 3.9237 1.4438 9.7620 15 14 6.4496 1.4429 8.6239 16 1 6.9451 2.8428 8.6240 17 1 6.9440 0.7428 9.8366 18 1 6.9449 0.7425 7.4117 19 6 4.2379 1.4425 -1.2679 20 1 3.5323 1.4347 -2.0987 21 6 5.1381 0.1968 -1.3420 22 6 6.1147 0.4250 -2.5245 23 16 6.5947 2.1811 -2.3121 24 8 7.7477 2.2574 -1.4851 25 8 6.5872 2.8276 -3.5775 26 6 5.1257 2.7000 -1.3537 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 2.7975 2.3322 2.5305 35 1 2.7980 0.5522 2.5303 36 1 5.0450 0.5521 3.5784 37 1 5.0449 2.3321 3.5788 38 1 3.0264 2.3326 5.0184 39 1 3.0258 0.5526 5.0184 40 1 5.2733 0.5527 6.0668 41 1 5.2733 2.3327 6.0664 42 1 4.4084 1.4441 10.6022 43 1 4.5326 -0.6911 -1.5239 44 1 5.6969 0.0842 -0.4129 45 1 5.6091 0.2747 -3.4783 46 1 6.9842 -0.2268 -2.4394 47 1 5.4202 3.0241 -0.3555 48 1 4.5997 3.5019 -1.8715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588271247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:43 Heat of formation + Delta-G solvation = -153.723859 kcal Electronic energy + Delta-G solvation = -27100.699088 eV Core-core repulsion = 23281.186639 eV Total energy + Delta-G solvation = -3819.512449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47499 -38.10672 -37.93070 -37.09179 -36.73023 -36.07140 -34.54030 -33.25477 -31.89029 -30.51400 -27.88435 -27.02845 -25.89310 -24.07135 -22.72012 -22.30701 -21.66643 -19.91371 -19.76018 -18.87068 -18.29761 -17.95172 -17.22842 -16.93397 -16.82094 -16.51799 -16.30914 -15.68935 -15.50122 -15.20725 -15.10778 -14.78016 -14.63272 -14.30731 -14.01951 -13.78479 -13.68426 -13.45158 -13.34615 -13.21586 -13.12649 -13.04337 -12.90581 -12.76517 -12.63834 -12.45510 -12.25943 -12.10019 -12.08962 -11.77020 -11.71272 -11.50369 -11.47006 -11.32170 -11.26539 -11.22540 -10.76783 -10.56242 -9.75140 -8.30604 -6.33315 -0.93794 1.33999 1.35408 1.48004 1.49577 1.61890 1.97542 2.34923 2.63683 3.04487 3.05046 3.32128 3.51195 3.65835 3.76481 3.93500 4.01021 4.03642 4.10263 4.11962 4.22620 4.42709 4.53096 4.55557 4.59983 4.63471 4.67454 4.75186 4.78024 4.81150 4.86222 4.89504 5.02155 5.06762 5.14622 5.19523 5.27161 5.29168 5.34093 5.53164 5.59134 5.64527 5.65220 5.68415 6.28624 6.31796 6.74736 7.16687 7.31626 8.85992 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.002800 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.431042 B = 9998.799368 C =11780.101452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.099 3.901 4 N -0.600 5.600 5 C 0.511 3.489 6 O -0.567 6.567 7 C -0.133 4.133 8 C -0.099 4.099 9 C -0.092 4.092 10 C -0.017 4.017 11 C -0.529 4.529 12 H 0.038 0.962 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.253 1.253 19 C 0.155 3.845 20 H 0.157 0.843 21 C -0.145 4.145 22 C -0.553 4.553 23 S 2.383 3.617 24 O -0.989 6.989 25 O -0.975 6.975 26 C -0.602 4.602 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.266 0.734 43 H 0.125 0.875 44 H 0.078 0.922 45 H 0.176 0.824 46 H 0.147 0.853 47 H 0.126 0.874 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 -3.210 -33.000 33.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C -0.022 4.022 4 N -0.331 5.331 5 C 0.301 3.699 6 O -0.446 6.446 7 C -0.173 4.173 8 C -0.137 4.137 9 C -0.130 4.130 10 C -0.054 4.054 11 C -0.567 4.567 12 H 0.056 0.944 13 C -0.192 4.192 14 N -0.591 5.591 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.177 1.177 19 C 0.050 3.950 20 H 0.174 0.826 21 C -0.184 4.184 22 C -0.686 4.686 23 S 2.572 3.428 24 O -0.986 6.986 25 O -0.972 6.972 26 C -0.734 4.734 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.096 0.904 45 H 0.194 0.806 46 H 0.166 0.834 47 H 0.144 0.856 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.244 -2.651 -33.137 33.654 hybrid contribution 0.298 -0.234 1.306 1.360 sum -4.947 -2.885 -31.831 32.342 Atomic orbital electron populations 1.21695 0.94368 1.02191 1.02574 1.21962 0.96754 0.96554 1.02802 1.22085 0.76530 0.97974 1.05658 1.48046 1.07869 1.73077 1.04142 1.21111 0.87732 0.74629 0.86453 1.90708 1.15666 1.50282 1.87969 1.21754 0.99132 1.06107 0.90265 1.21296 0.97516 1.01765 0.93102 1.21325 0.97700 1.01254 0.92716 1.19574 0.96009 0.95983 0.93874 1.21543 0.94004 1.49888 0.91295 0.94354 1.25966 1.03720 0.94326 0.95150 1.70054 1.37917 1.52917 0.98229 0.85727 0.79976 0.79146 0.78238 1.19335 1.20684 1.17690 1.21697 0.94758 0.89771 0.88746 0.82553 1.22739 0.97960 1.00356 0.97391 1.30384 1.10392 1.19737 1.08120 1.08905 0.77706 0.81261 0.74973 1.93580 1.48158 1.86947 1.69881 1.93558 1.87694 1.74956 1.40963 1.30834 1.18214 1.08679 1.15643 0.92650 0.91303 0.92699 0.90569 0.92778 0.89221 0.87119 0.86945 0.86948 0.92937 0.93095 0.92549 0.92466 0.96878 0.97100 0.92509 0.85662 0.90363 0.80622 0.83447 0.85570 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 71.98 0.71 -0.15 16 2 C -0.14 -0.90 6.26 30.60 0.19 -0.71 16 3 C 0.10 0.62 5.18 86.38 0.45 1.06 16 4 N -0.60 -7.35 2.44 -793.99 -1.94 -9.29 16 5 C 0.51 10.88 6.83 87.66 0.60 11.48 16 6 O -0.57 -16.85 12.39 -3.05 -0.04 -16.89 16 7 C -0.13 -2.80 4.25 29.85 0.13 -2.68 16 8 C -0.10 -3.09 4.50 30.59 0.14 -2.95 16 9 C -0.09 -3.47 5.15 30.59 0.16 -3.32 16 10 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 11 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 12 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 13 C 0.01 0.31 5.47 84.66 0.46 0.77 16 14 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 15 Si 0.95 46.19 27.47 68.60 1.88 48.07 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 19 C 0.16 1.42 2.98 45.68 0.14 1.56 16 20 H 0.16 -0.02 7.81 -2.38 -0.02 -0.04 16 21 C -0.15 -1.52 5.79 31.59 0.18 -1.34 16 22 C -0.55 -4.53 7.31 72.68 0.53 -4.00 16 23 S 2.38 41.49 6.10 -56.49 -0.34 41.15 16 24 O -0.99 -29.19 18.15 -127.47 -2.31 -31.50 16 25 O -0.97 -21.56 18.15 -127.47 -2.31 -23.88 16 26 C -0.60 -8.08 6.54 72.38 0.47 -7.61 16 27 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.54 7.22 -2.38 -0.02 0.52 16 32 H 0.09 0.58 6.44 -2.38 -0.02 0.57 16 33 H 0.11 0.11 7.93 -2.39 -0.02 0.09 16 34 H 0.11 1.92 7.40 -2.38 -0.02 1.90 16 35 H 0.11 1.94 7.19 -2.39 -0.02 1.93 16 36 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 41 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 42 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 43 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.08 1.45 5.94 -2.39 -0.01 1.43 16 45 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.13 2.56 6.14 -2.39 -0.01 2.55 16 48 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -88.93 388.05 0.63 -88.30 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 0.87 Total: 3.61 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 4.53 Total: -39.41 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.64 Total: -69.45 kcal Atomic # 8 Polarization: -67.61 SS G_CDS: -4.66 Total: -72.27 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.07 kcal Atomic # 16 Polarization: 41.49 SS G_CDS: -0.34 Total: 41.15 kcal Total: -88.93 0.63 -88.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588271247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.425 kcal (2) G-P(sol) polarization free energy of solvation -88.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds