Wall clock time and date at job start Tue Mar 31 2020 17:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99996 * 2 1 4 4 H 1.08996 * 112.90764 * 18.75293 * 3 2 1 5 5 C 1.53784 * 113.61617 * 247.49978 * 3 2 1 6 6 H 1.08994 * 113.61358 * 156.25481 * 5 3 2 7 7 C 1.52999 * 113.61272 * 25.43285 * 5 3 2 8 8 C 1.53787 * 87.07997 * 270.88666 * 5 3 2 9 9 H 1.09005 * 113.61279 * 220.02004 * 8 5 3 10 10 N 1.46495 * 113.61464 * 89.11388 * 8 5 3 11 11 S 1.65607 * 119.99727 * 117.50357 * 10 8 5 12 12 O 1.42101 * 104.27492 * 181.07233 * 11 10 8 13 13 O 1.42100 * 104.27461 * 308.92850 * 11 10 8 14 14 C 1.81396 * 104.45022 * 64.99900 * 11 10 8 15 15 C 1.53004 * 109.47144 * 172.64635 * 14 11 10 16 16 C 1.50694 * 115.54817 * 39.94833 * 15 14 11 17 17 H 1.08006 * 120.00295 * 272.12691 * 16 15 14 18 18 C 1.37882 * 120.00297 * 92.12481 * 16 15 14 19 19 N 1.31509 * 120.00316 * 173.99822 * 18 16 15 20 20 Si 1.86803 * 119.99364 * 353.99838 * 18 16 15 21 21 H 1.48509 * 109.46942 * 93.59831 * 20 18 16 22 22 H 1.48503 * 109.46931 * 213.59202 * 20 18 16 23 23 H 1.48496 * 109.47476 * 333.59291 * 20 18 16 24 24 C 1.53000 * 117.49752 * 254.23902 * 15 14 11 25 25 C 1.52993 * 59.99989 * 252.50929 * 24 15 14 26 26 C 1.53786 * 113.61183 * 150.00035 * 3 2 1 27 27 C 1.52997 * 113.61473 * 203.66433 * 26 3 2 28 28 C 1.52993 * 113.61472 * 334.56989 * 26 3 2 29 29 H 1.09001 * 109.46976 * 59.99532 * 1 2 3 30 30 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46801 * 299.99657 * 1 2 3 32 32 H 1.08995 * 109.47091 * 79.50671 * 7 5 3 33 33 H 1.09002 * 109.46631 * 199.50590 * 7 5 3 34 34 H 1.08999 * 109.47123 * 319.50337 * 7 5 3 35 35 H 0.96995 * 120.00756 * 297.50167 * 10 8 5 36 36 H 1.08994 * 109.47443 * 292.65147 * 14 11 10 37 37 H 1.09004 * 109.46974 * 52.65123 * 14 11 10 38 38 H 0.97004 * 119.99960 * 180.02562 * 19 18 16 39 39 H 1.08995 * 117.50197 * 0.02562 * 24 15 14 40 40 H 1.09007 * 117.49377 * 145.01889 * 24 15 14 41 41 H 1.08999 * 117.50427 * 252.51320 * 25 24 15 42 42 H 1.09003 * 117.49495 * 107.49193 * 25 24 15 43 43 H 1.09004 * 109.47161 * 79.50432 * 27 26 3 44 44 H 1.08998 * 109.47254 * 199.50668 * 27 26 3 45 45 H 1.08997 * 109.47371 * 319.50918 * 27 26 3 46 46 H 1.09000 * 109.47163 * 40.49343 * 28 26 3 47 47 H 1.09006 * 109.47183 * 160.49485 * 28 26 3 48 48 H 1.08993 * 109.47192 * 280.49207 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3228 5 6 2.7534 1.6489 -1.3018 6 1 2.8376 2.7197 -1.4869 7 6 2.2469 0.8734 -2.5195 8 6 4.0061 1.0330 -0.6566 9 1 4.9215 1.5874 -0.8639 10 7 4.1436 -0.4054 -0.8978 11 16 5.4465 -0.9827 -1.7416 12 8 5.2328 -2.3863 -1.7990 13 8 5.4736 -0.1967 -2.9251 14 6 6.8733 -0.5985 -0.6895 15 6 8.1289 -1.2469 -1.2761 16 6 8.2474 -1.1927 -2.7774 17 1 7.8079 -1.9721 -3.3824 18 6 8.9168 -0.1481 -3.3789 19 7 9.1230 -0.1602 -4.6777 20 14 9.5309 1.2841 -2.3489 21 1 10.9399 1.0382 -1.9493 22 1 9.4533 2.5354 -3.1448 23 1 8.6878 1.4174 -1.1337 24 6 8.6811 -2.4854 -0.5676 25 6 9.4204 -1.1502 -0.4616 26 6 3.3756 1.3718 0.7045 27 6 3.7344 2.7686 1.2155 28 6 3.5741 0.2823 1.7602 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3317 1.3353 -2.8895 33 1 3.0051 0.8910 -3.3025 34 1 2.0434 -0.1587 -2.2341 35 1 3.4716 -1.0198 -0.5635 36 1 7.0102 0.4818 -0.6431 37 1 6.6995 -0.9862 0.3143 38 1 9.5944 0.5746 -5.1008 39 1 8.1499 -2.8386 0.3161 40 1 9.1302 -3.2615 -1.1876 41 1 10.3558 -1.0476 -1.0117 42 1 9.3756 -0.6245 0.4923 43 1 3.2120 2.9577 2.1533 44 1 4.8101 2.8301 1.3800 45 1 3.4365 3.5131 0.4773 46 1 3.1676 -0.6594 1.3913 47 1 4.6383 0.1636 1.9642 48 1 3.0580 0.5665 2.6771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590754062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:15 Heat of formation + Delta-G solvation = -69.669653 kcal Electronic energy + Delta-G solvation = -29281.265217 eV Core-core repulsion = 25465.397632 eV Total energy + Delta-G solvation = -3815.867585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77157 -37.08050 -36.61911 -36.06235 -34.89748 -32.89882 -32.15097 -31.74217 -28.46758 -27.67565 -27.43841 -26.24294 -25.50264 -24.20652 -21.70364 -20.69188 -19.58004 -18.91701 -18.54078 -17.21436 -16.62232 -16.07372 -15.76151 -15.61648 -15.28053 -15.15095 -14.90974 -14.37221 -14.00091 -13.96403 -13.74068 -13.37133 -12.96181 -12.81005 -12.66571 -12.60293 -12.46074 -12.30430 -12.14089 -11.75319 -11.40707 -11.33356 -11.27051 -11.25646 -11.04930 -10.95142 -10.86356 -10.78261 -10.63553 -10.56073 -10.32305 -10.02037 -9.94663 -9.72131 -9.41243 -9.11704 -8.96862 -8.62921 -8.43193 -6.16767 -4.27400 1.14749 3.24245 3.32817 3.35060 3.38242 3.67827 4.32496 4.36705 4.44708 4.61055 4.69584 4.83222 4.84463 5.05036 5.07193 5.09027 5.16706 5.20836 5.22701 5.31459 5.40629 5.48163 5.53310 5.54846 5.58935 5.69714 5.76706 5.81927 5.90795 5.91541 6.01505 6.02523 6.09469 6.15536 6.21210 6.24511 6.36332 6.43682 6.51392 6.62971 6.64968 6.85987 7.08873 7.12578 7.49981 7.61930 8.36261 8.87008 9.45517 10.94828 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.004650 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.340740 B = 6019.570169 C = 6061.499743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.360 6.360 3 C 0.077 3.923 4 H 0.071 0.929 5 C -0.141 4.141 6 H 0.101 0.899 7 C -0.140 4.140 8 C 0.150 3.850 9 H 0.097 0.903 10 N -1.107 6.107 11 S 2.628 3.372 12 O -0.968 6.968 13 O -0.933 6.933 14 C -0.585 4.585 15 C 0.010 3.990 16 C -0.534 4.534 17 H 0.087 0.913 18 C 0.101 3.899 19 N -0.873 5.873 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.258 1.258 24 C -0.174 4.174 25 C -0.189 4.189 26 C -0.099 4.099 27 C -0.128 4.128 28 C -0.130 4.130 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.416 0.584 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.268 0.732 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 6.157 13.949 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.018 3.982 4 H 0.089 0.911 5 C -0.162 4.162 6 H 0.119 0.881 7 C -0.197 4.197 8 C 0.040 3.960 9 H 0.115 0.885 10 N -0.863 5.863 11 S 2.723 3.277 12 O -0.959 6.959 13 O -0.923 6.923 14 C -0.716 4.716 15 C 0.008 3.992 16 C -0.571 4.571 17 H 0.105 0.895 18 C -0.106 4.106 19 N -0.507 5.507 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.182 1.182 24 C -0.211 4.211 25 C -0.227 4.227 26 C -0.101 4.101 27 C -0.185 4.185 28 C -0.187 4.187 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.251 0.749 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.647 5.756 12.839 20.310 hybrid contribution 0.204 1.174 1.271 1.742 sum -14.444 6.931 14.110 21.348 Atomic orbital electron populations 1.22787 0.81155 1.02687 0.99759 1.87792 1.19333 1.26410 1.94283 1.23222 0.93764 0.84935 0.96270 0.91090 1.23451 0.96913 1.00368 0.95449 0.88051 1.21525 1.00447 1.00658 0.97065 1.21571 0.98291 0.81782 0.94308 0.88489 1.55874 1.41577 1.12737 1.76074 1.04568 0.73953 0.73993 0.75204 1.93501 1.84698 1.31132 1.86558 1.93570 1.85416 1.71073 1.42198 1.30346 1.17984 1.10013 1.13242 1.18746 0.88398 0.97629 0.94466 1.20406 1.39396 1.11079 0.86223 0.89525 1.24918 0.93740 0.97322 0.94576 1.69882 1.39060 1.32007 1.09791 0.86895 0.79640 0.82122 0.80857 1.20240 1.21566 1.18240 1.22958 1.04760 0.91713 1.01643 1.22936 0.97680 1.01448 1.00668 1.22531 0.95249 0.96851 0.95454 1.21571 1.02264 0.93731 1.00980 1.21513 1.01544 0.98671 0.96992 0.94003 0.89649 0.94308 0.93689 0.91112 0.91555 0.74895 0.86300 0.87545 0.92186 0.90589 0.88819 0.89045 0.90731 0.92046 0.91445 0.91987 0.91124 0.92500 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.36 -3.92 6.41 -35.23 -0.23 -4.15 16 3 C 0.08 0.78 3.66 -25.91 -0.09 0.69 16 4 H 0.07 0.60 7.83 -51.93 -0.41 0.20 16 5 C -0.14 -1.69 3.96 -89.80 -0.36 -2.05 16 6 H 0.10 1.04 7.63 -51.93 -0.40 0.65 16 7 C -0.14 -1.91 8.98 37.16 0.33 -1.57 16 8 C 0.15 2.01 3.63 -67.11 -0.24 1.77 16 9 H 0.10 1.32 7.91 -51.93 -0.41 0.91 16 10 N -1.11 -17.22 3.75 -4.19 -0.02 -17.23 16 11 S 2.63 55.00 4.54 -107.50 -0.49 54.51 16 12 O -0.97 -22.84 18.08 -57.54 -1.04 -23.88 16 13 O -0.93 -23.04 17.03 -57.54 -0.98 -24.02 16 14 C -0.59 -11.60 6.05 37.16 0.22 -11.38 16 15 C 0.01 0.24 1.12 -155.66 -0.17 0.06 16 16 C -0.53 -15.14 7.55 -34.44 -0.26 -15.40 16 17 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 18 C 0.10 2.92 5.46 -17.82 -0.10 2.83 16 19 N -0.87 -26.80 13.96 55.43 0.77 -26.03 16 20 Si 0.88 21.42 24.98 -169.99 -4.25 17.18 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.26 -5.74 5.46 56.52 0.31 -5.44 16 24 C -0.17 -3.61 9.88 -26.73 -0.26 -3.87 16 25 C -0.19 -3.98 7.54 -26.74 -0.20 -4.18 16 26 C -0.10 -1.03 1.34 -153.69 -0.21 -1.23 16 27 C -0.13 -1.07 9.07 37.16 0.34 -0.74 16 28 C -0.13 -1.35 8.46 37.15 0.31 -1.03 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 35 H 0.42 6.01 6.26 -34.47 -0.22 5.79 16 36 H 0.12 2.23 6.46 -51.93 -0.34 1.89 16 37 H 0.11 1.71 7.95 -51.92 -0.41 1.30 16 38 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 40 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 41 H 0.09 2.01 7.01 -51.93 -0.36 1.65 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.47 7.32 -51.93 -0.38 0.09 16 46 H 0.07 0.79 5.85 -51.93 -0.30 0.49 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 380.74 15.07 5.74 5.74 Total: -1.00 -34.73 380.74 -8.36 -43.09 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.29 Total: 9.53 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 0.41 Total: -34.75 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.76 Total: -43.26 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -2.25 Total: -52.04 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.25 Total: 17.18 kcal Atomic # 16 Polarization: 55.00 SS G_CDS: -0.49 Total: 54.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.73 -8.36 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590754062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.575 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds