Wall clock time and date at job start Tue Mar 31 2020 17:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99996 * 2 1 4 4 H 1.08996 * 112.90764 * 18.75293 * 3 2 1 5 5 C 1.53784 * 113.61617 * 247.49978 * 3 2 1 6 6 H 1.08994 * 113.61358 * 156.25481 * 5 3 2 7 7 C 1.52999 * 113.61272 * 25.43285 * 5 3 2 8 8 C 1.53787 * 87.07997 * 270.88666 * 5 3 2 9 9 H 1.09005 * 113.61279 * 220.02004 * 8 5 3 10 10 N 1.46495 * 113.61464 * 89.11388 * 8 5 3 11 11 S 1.65607 * 119.99727 * 117.50357 * 10 8 5 12 12 O 1.42101 * 104.27492 * 181.07233 * 11 10 8 13 13 O 1.42100 * 104.27461 * 308.92850 * 11 10 8 14 14 C 1.81396 * 104.45022 * 64.99900 * 11 10 8 15 15 C 1.53004 * 109.47144 * 172.64635 * 14 11 10 16 16 C 1.50694 * 115.54817 * 39.94833 * 15 14 11 17 17 H 1.08006 * 120.00295 * 272.12691 * 16 15 14 18 18 C 1.37882 * 120.00297 * 92.12481 * 16 15 14 19 19 N 1.31509 * 120.00316 * 173.99822 * 18 16 15 20 20 Si 1.86803 * 119.99364 * 353.99838 * 18 16 15 21 21 H 1.48509 * 109.46942 * 93.59831 * 20 18 16 22 22 H 1.48503 * 109.46931 * 213.59202 * 20 18 16 23 23 H 1.48496 * 109.47476 * 333.59291 * 20 18 16 24 24 C 1.53000 * 117.49752 * 254.23902 * 15 14 11 25 25 C 1.52993 * 59.99989 * 252.50929 * 24 15 14 26 26 C 1.53786 * 113.61183 * 150.00035 * 3 2 1 27 27 C 1.52997 * 113.61473 * 203.66433 * 26 3 2 28 28 C 1.52993 * 113.61472 * 334.56989 * 26 3 2 29 29 H 1.09001 * 109.46976 * 59.99532 * 1 2 3 30 30 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46801 * 299.99657 * 1 2 3 32 32 H 1.08995 * 109.47091 * 79.50671 * 7 5 3 33 33 H 1.09002 * 109.46631 * 199.50590 * 7 5 3 34 34 H 1.08999 * 109.47123 * 319.50337 * 7 5 3 35 35 H 0.96995 * 120.00756 * 297.50167 * 10 8 5 36 36 H 1.08994 * 109.47443 * 292.65147 * 14 11 10 37 37 H 1.09004 * 109.46974 * 52.65123 * 14 11 10 38 38 H 0.97004 * 119.99960 * 180.02562 * 19 18 16 39 39 H 1.08995 * 117.50197 * 0.02562 * 24 15 14 40 40 H 1.09007 * 117.49377 * 145.01889 * 24 15 14 41 41 H 1.08999 * 117.50427 * 252.51320 * 25 24 15 42 42 H 1.09003 * 117.49495 * 107.49193 * 25 24 15 43 43 H 1.09004 * 109.47161 * 79.50432 * 27 26 3 44 44 H 1.08998 * 109.47254 * 199.50668 * 27 26 3 45 45 H 1.08997 * 109.47371 * 319.50918 * 27 26 3 46 46 H 1.09000 * 109.47163 * 40.49343 * 28 26 3 47 47 H 1.09006 * 109.47183 * 160.49485 * 28 26 3 48 48 H 1.08993 * 109.47192 * 280.49207 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3228 5 6 2.7534 1.6489 -1.3018 6 1 2.8376 2.7197 -1.4869 7 6 2.2469 0.8734 -2.5195 8 6 4.0061 1.0330 -0.6566 9 1 4.9215 1.5874 -0.8639 10 7 4.1436 -0.4054 -0.8978 11 16 5.4465 -0.9827 -1.7416 12 8 5.2328 -2.3863 -1.7990 13 8 5.4736 -0.1967 -2.9251 14 6 6.8733 -0.5985 -0.6895 15 6 8.1289 -1.2469 -1.2761 16 6 8.2474 -1.1927 -2.7774 17 1 7.8079 -1.9721 -3.3824 18 6 8.9168 -0.1481 -3.3789 19 7 9.1230 -0.1602 -4.6777 20 14 9.5309 1.2841 -2.3489 21 1 10.9399 1.0382 -1.9493 22 1 9.4533 2.5354 -3.1448 23 1 8.6878 1.4174 -1.1337 24 6 8.6811 -2.4854 -0.5676 25 6 9.4204 -1.1502 -0.4616 26 6 3.3756 1.3718 0.7045 27 6 3.7344 2.7686 1.2155 28 6 3.5741 0.2823 1.7602 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.3317 1.3353 -2.8895 33 1 3.0051 0.8910 -3.3025 34 1 2.0434 -0.1587 -2.2341 35 1 3.4716 -1.0198 -0.5635 36 1 7.0102 0.4818 -0.6431 37 1 6.6995 -0.9862 0.3143 38 1 9.5944 0.5746 -5.1008 39 1 8.1499 -2.8386 0.3161 40 1 9.1302 -3.2615 -1.1876 41 1 10.3558 -1.0476 -1.0117 42 1 9.3756 -0.6245 0.4923 43 1 3.2120 2.9577 2.1533 44 1 4.8101 2.8301 1.3800 45 1 3.4365 3.5131 0.4773 46 1 3.1676 -0.6594 1.3913 47 1 4.6383 0.1636 1.9642 48 1 3.0580 0.5665 2.6771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590754062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:14 Heat of formation + Delta-G solvation = -95.692926 kcal Electronic energy + Delta-G solvation = -29282.393671 eV Core-core repulsion = 25465.397632 eV Total energy + Delta-G solvation = -3816.996039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63783 -38.83322 -37.88478 -37.36131 -36.67320 -34.32543 -33.95863 -32.73739 -30.10157 -28.33822 -28.30658 -27.61962 -26.97922 -25.11642 -23.35540 -21.64658 -21.32947 -20.17347 -19.83319 -18.73642 -18.31358 -17.24023 -17.06006 -16.89794 -16.59605 -16.44442 -16.06861 -15.79222 -15.45622 -15.09516 -14.84278 -14.75646 -14.49675 -14.22043 -14.09121 -13.56958 -13.51919 -13.16795 -13.03342 -13.00719 -12.86767 -12.86041 -12.66346 -12.63184 -12.49929 -12.28444 -12.22515 -12.20473 -12.04446 -11.81731 -11.67416 -11.66034 -11.48051 -10.92326 -10.82822 -10.70899 -10.34810 -10.19921 -9.99067 -8.35402 -6.51409 -0.47423 1.32392 1.35757 1.47925 2.12104 2.34126 2.78634 2.93916 3.02826 3.16866 3.47610 3.53871 3.64940 3.78315 3.83693 4.04267 4.17015 4.30278 4.35320 4.36152 4.41707 4.46757 4.51365 4.60621 4.61593 4.64394 4.72253 4.79391 4.85178 4.91998 4.94034 4.96431 4.99395 5.05694 5.13499 5.16786 5.19903 5.21724 5.31689 5.46444 5.49563 5.56446 5.62211 5.65551 6.14834 6.29666 6.42883 6.61970 7.25360 8.81431 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.004650 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.340740 B = 6019.570169 C = 6061.499743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.381 6.381 3 C 0.084 3.916 4 H 0.097 0.903 5 C -0.147 4.147 6 H 0.121 0.879 7 C -0.139 4.139 8 C 0.123 3.877 9 H 0.093 0.907 10 N -1.089 6.089 11 S 2.626 3.374 12 O -1.009 7.009 13 O -0.987 6.987 14 C -0.571 4.571 15 C -0.030 4.030 16 C -0.536 4.536 17 H 0.025 0.975 18 C 0.037 3.963 19 N -0.935 5.935 20 Si 0.933 3.067 21 H -0.259 1.259 22 H -0.294 1.294 23 H -0.214 1.214 24 C -0.169 4.169 25 C -0.170 4.170 26 C -0.084 4.084 27 C -0.128 4.128 28 C -0.133 4.133 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.421 0.579 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.269 0.731 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.602 8.489 18.889 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.115 0.885 5 C -0.168 4.168 6 H 0.139 0.861 7 C -0.196 4.196 8 C 0.015 3.985 9 H 0.111 0.889 10 N -0.848 5.848 11 S 2.723 3.277 12 O -1.000 7.000 13 O -0.976 6.976 14 C -0.704 4.704 15 C -0.032 4.032 16 C -0.573 4.573 17 H 0.043 0.957 18 C -0.164 4.164 19 N -0.571 5.571 20 Si 0.755 3.245 21 H -0.184 1.184 22 H -0.221 1.221 23 H -0.137 1.137 24 C -0.206 4.206 25 C -0.209 4.209 26 C -0.086 4.086 27 C -0.185 4.185 28 C -0.190 4.190 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.373 8.056 17.789 24.853 hybrid contribution 0.334 0.321 -0.342 0.576 sum -15.038 8.377 17.447 24.510 Atomic orbital electron populations 1.22939 0.79832 1.03403 1.00700 1.87771 1.20883 1.27036 1.94270 1.23214 0.94325 0.85371 0.94532 0.88502 1.23591 0.96733 1.01030 0.95412 0.86105 1.21473 1.00265 1.00728 0.97141 1.22010 0.99017 0.79984 0.97492 0.88854 1.55262 1.39977 1.14175 1.75375 1.04198 0.75255 0.72830 0.75413 1.93433 1.85626 1.33487 1.87425 1.93510 1.86534 1.71742 1.45810 1.30130 1.14594 1.11016 1.14647 1.18704 0.91493 1.01191 0.91827 1.20494 1.38300 1.09263 0.89270 0.95705 1.25967 0.94012 1.00643 0.95730 1.70056 1.41286 1.33409 1.12378 0.86001 0.80518 0.77433 0.80548 1.18384 1.22098 1.13655 1.23073 1.04274 0.91109 1.02123 1.23037 0.95286 1.01195 1.01335 1.22506 0.94315 0.98172 0.93619 1.21621 1.02675 0.92207 1.02017 1.21543 1.01869 0.98042 0.97552 0.93832 0.89226 0.92499 0.91735 0.94798 0.92756 0.74111 0.84519 0.82708 0.92171 0.86731 0.90548 0.90419 0.86317 0.90179 0.91294 0.91181 0.92445 0.92251 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 113.37 1.23 1.61 16 2 O -0.38 -7.49 6.41 -148.98 -0.95 -8.45 16 3 C 0.08 1.45 3.66 31.12 0.11 1.57 16 4 H 0.10 1.21 7.83 -2.39 -0.02 1.19 16 5 C -0.15 -3.28 3.96 -10.26 -0.04 -3.32 16 6 H 0.12 2.19 7.63 -2.39 -0.02 2.17 16 7 C -0.14 -3.84 8.98 71.98 0.65 -3.19 16 8 C 0.12 3.08 3.63 45.52 0.17 3.25 16 9 H 0.09 2.37 7.91 -2.38 -0.02 2.35 16 10 N -1.09 -33.20 3.75 -167.18 -0.63 -33.83 16 11 S 2.63 111.90 4.54 -56.49 -0.26 111.64 16 12 O -1.01 -49.52 18.08 -127.65 -2.31 -51.83 16 13 O -0.99 -51.50 17.03 -127.65 -2.17 -53.68 16 14 C -0.57 -21.03 6.05 71.98 0.44 -20.59 16 15 C -0.03 -1.35 1.12 -52.93 -0.06 -1.41 16 16 C -0.54 -31.62 7.55 25.60 0.19 -31.42 16 17 H 0.02 1.71 8.06 -2.91 -0.02 1.68 16 18 C 0.04 2.21 5.46 84.66 0.46 2.68 16 19 N -0.93 -60.68 13.96 21.45 0.30 -60.38 16 20 Si 0.93 43.11 24.98 68.60 1.71 44.82 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.21 -8.30 5.46 99.48 0.54 -7.76 16 24 C -0.17 -6.62 9.88 30.59 0.30 -6.31 16 25 C -0.17 -6.48 7.54 30.59 0.23 -6.25 16 26 C -0.08 -1.45 1.34 -51.65 -0.07 -1.51 16 27 C -0.13 -1.55 9.07 71.98 0.65 -0.90 16 28 C -0.13 -2.25 8.46 71.98 0.61 -1.64 16 29 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.59 6.54 -2.39 -0.02 1.58 16 35 H 0.42 12.02 6.26 -96.75 -0.61 11.42 16 36 H 0.14 4.54 6.46 -2.39 -0.02 4.52 16 37 H 0.15 4.17 7.95 -2.39 -0.02 4.15 16 38 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 39 H 0.11 3.60 8.08 -2.39 -0.02 3.58 16 40 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.08 3.18 7.01 -2.39 -0.02 3.17 16 42 H 0.12 3.52 8.14 -2.39 -0.02 3.51 16 43 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.75 7.32 -2.39 -0.02 0.73 16 46 H 0.06 1.13 5.85 -2.39 -0.01 1.11 16 47 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -83.13 380.74 0.74 -82.40 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: 0.17 Total: 36.73 kcal Atomic # 6 Polarization: -72.32 SS G_CDS: 4.87 Total: -67.44 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -0.33 Total: -94.20 kcal Atomic # 8 Polarization: -108.52 SS G_CDS: -5.44 Total: -113.95 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.71 Total: 44.82 kcal Atomic # 16 Polarization: 111.90 SS G_CDS: -0.26 Total: 111.64 kcal Total: -83.13 0.74 -82.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590754062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.294 kcal (2) G-P(sol) polarization free energy of solvation -83.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds