Wall clock time and date at job start Tue Mar 31 2020 17:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00138 * 2 1 4 4 H 1.08999 * 112.91292 * 18.74177 * 3 2 1 5 5 C 1.53784 * 113.61353 * 247.49045 * 3 2 1 6 6 H 1.09002 * 113.61089 * 156.33576 * 5 3 2 7 7 C 1.52998 * 113.69070 * 25.44347 * 5 3 2 8 8 C 1.53774 * 87.08201 * 270.88158 * 5 3 2 9 9 H 1.09001 * 113.61492 * 89.11206 * 8 5 3 10 10 N 1.46499 * 113.69271 * 220.00550 * 8 5 3 11 11 S 1.65595 * 120.00342 * 242.53499 * 10 8 5 12 12 O 1.42098 * 104.27965 * 181.06857 * 11 10 8 13 13 O 1.42101 * 104.27784 * 308.93211 * 11 10 8 14 14 C 1.81405 * 104.44643 * 64.99957 * 11 10 8 15 15 C 1.53006 * 109.46854 * 173.43404 * 14 11 10 16 16 C 1.50697 * 115.55282 * 39.95372 * 15 14 11 17 17 H 1.08000 * 119.99807 * 264.82645 * 16 15 14 18 18 C 1.37873 * 120.00234 * 84.82424 * 16 15 14 19 19 N 1.31520 * 119.99745 * 353.14464 * 18 16 15 20 20 Si 1.86800 * 120.00206 * 173.14451 * 18 16 15 21 21 H 1.48505 * 109.46973 * 90.00103 * 20 18 16 22 22 H 1.48500 * 109.47248 * 210.00211 * 20 18 16 23 23 H 1.48498 * 109.47082 * 330.00311 * 20 18 16 24 24 C 1.53006 * 117.49632 * 254.24080 * 15 14 11 25 25 C 1.52998 * 59.99819 * 252.51534 * 24 15 14 26 26 C 1.53779 * 87.08322 * 334.56697 * 8 5 3 27 27 C 1.53004 * 113.61612 * 139.97814 * 26 8 5 28 28 C 1.52999 * 113.61465 * 270.88140 * 26 8 5 29 29 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47787 * 300.00790 * 1 2 3 31 31 H 1.09002 * 109.46643 * 60.00764 * 1 2 3 32 32 H 1.09003 * 109.46813 * 322.46257 * 7 5 3 33 33 H 1.08999 * 109.46991 * 82.46141 * 7 5 3 34 34 H 1.08994 * 109.47048 * 202.46351 * 7 5 3 35 35 H 0.97002 * 120.00091 * 62.54040 * 10 8 5 36 36 H 1.08997 * 109.47309 * 293.43377 * 14 11 10 37 37 H 1.09000 * 109.46921 * 53.43378 * 14 11 10 38 38 H 0.96997 * 120.00028 * 185.02948 * 19 18 16 39 39 H 1.09006 * 117.49729 * 0.02562 * 24 15 14 40 40 H 1.09006 * 117.49503 * 145.02226 * 24 15 14 41 41 H 1.09006 * 117.49619 * 252.50980 * 25 24 15 42 42 H 1.08997 * 117.51743 * 107.48926 * 25 24 15 43 43 H 1.09000 * 109.47046 * 60.00382 * 27 26 8 44 44 H 1.08998 * 109.47033 * 179.97438 * 27 26 8 45 45 H 1.08995 * 109.47022 * 300.00353 * 27 26 8 46 46 H 1.09000 * 109.47178 * 60.00316 * 28 26 8 47 47 H 1.09010 * 109.47090 * 179.97438 * 28 26 8 48 48 H 1.08994 * 109.47208 * 299.99891 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0798 0.3226 5 6 2.7536 1.6487 -1.3017 6 1 2.8391 2.7196 -1.4862 7 6 2.2484 0.8742 -2.5207 8 6 4.0061 1.0330 -0.6563 9 1 4.1085 -0.0373 -0.8357 10 7 5.2375 1.7766 -0.9340 11 16 6.4684 1.0556 -1.7750 12 8 7.4843 2.0477 -1.8286 13 8 6.6814 -0.1754 -1.0980 14 6 5.7772 0.7625 -3.4264 15 6 6.8772 0.2437 -4.3549 16 6 7.8355 -0.7432 -3.7393 17 1 8.7737 -0.4005 -3.3285 18 6 7.5145 -2.0835 -3.7006 19 7 6.3196 -2.4846 -4.0761 20 14 8.7767 -3.3296 -3.1147 21 1 8.6485 -3.5111 -1.6463 22 1 8.5435 -4.6283 -3.7962 23 1 10.1415 -2.8402 -3.4356 24 6 7.4342 1.2121 -5.4003 25 6 6.5257 0.0595 -5.8325 26 6 3.3755 1.3719 0.7046 27 6 3.5739 0.2825 1.7605 28 6 3.7342 2.7688 1.2155 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.9949 -0.1438 -2.2248 33 1 1.3632 1.3669 -2.9229 34 1 3.0273 0.8478 -3.2827 35 1 5.3318 2.6913 -0.6252 36 1 4.9790 0.0233 -3.3603 37 1 5.3767 1.6952 -3.8234 38 1 6.0685 -3.4166 -3.9804 39 1 7.0174 2.2190 -5.4263 40 1 8.4942 1.1357 -5.6429 41 1 6.9879 -0.7753 -6.3595 42 1 5.5108 0.3075 -6.1431 43 1 4.6399 0.1267 1.9258 44 1 3.1032 0.5911 2.6938 45 1 3.1204 -0.6461 1.4140 46 1 3.3887 3.5165 0.5017 47 1 3.2536 2.9377 2.1793 48 1 4.8153 2.8474 1.3294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590754064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:19 Heat of formation + Delta-G solvation = -79.023349 kcal Electronic energy + Delta-G solvation = -29075.414237 eV Core-core repulsion = 25259.141046 eV Total energy + Delta-G solvation = -3816.273192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62507 -36.69613 -36.66891 -35.99423 -34.82275 -32.69413 -32.00276 -31.98366 -28.14816 -27.68625 -27.32629 -26.24855 -25.40070 -23.92525 -21.16545 -20.72268 -19.63906 -18.85823 -18.51497 -17.02280 -16.75362 -16.24807 -15.68821 -15.36237 -15.06264 -14.90691 -14.66520 -14.25449 -14.14685 -13.83288 -13.50992 -13.28860 -13.01411 -12.75882 -12.32567 -12.25337 -12.12843 -12.09212 -11.74847 -11.71069 -11.52287 -11.36103 -11.27803 -11.05988 -10.94597 -10.91915 -10.84049 -10.79513 -10.64728 -10.47669 -10.29541 -10.06915 -9.94615 -9.64525 -9.39602 -8.96326 -8.80239 -8.48269 -8.05867 -6.10932 -4.25222 1.28570 3.36635 3.44248 3.46894 3.52324 3.70062 4.40647 4.44503 4.48739 4.67581 4.78113 4.90641 5.10375 5.12152 5.17969 5.19527 5.23698 5.27845 5.35829 5.39529 5.52101 5.52575 5.56662 5.64596 5.67847 5.83660 5.92645 5.93335 5.99478 6.03976 6.07098 6.13591 6.33234 6.35119 6.39895 6.43117 6.49235 6.63280 6.68028 6.74123 7.00231 7.15310 7.22655 7.41843 7.43080 7.83552 8.23854 8.83000 9.51641 10.96555 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.004628 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.449303 B = 6048.851750 C = 6190.748528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.076 3.924 4 H 0.075 0.925 5 C -0.146 4.146 6 H 0.099 0.901 7 C -0.149 4.149 8 C 0.149 3.851 9 H 0.123 0.877 10 N -1.124 6.124 11 S 2.620 3.380 12 O -0.980 6.980 13 O -0.941 6.941 14 C -0.559 4.559 15 C 0.052 3.948 16 C -0.543 4.543 17 H 0.068 0.932 18 C 0.099 3.901 19 N -0.865 5.865 20 Si 0.888 3.112 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.270 1.270 24 C -0.205 4.205 25 C -0.144 4.144 26 C -0.090 4.090 27 C -0.135 4.135 28 C -0.130 4.130 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.264 0.736 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 8.887 7.608 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.017 3.983 4 H 0.093 0.907 5 C -0.167 4.167 6 H 0.117 0.883 7 C -0.206 4.206 8 C 0.041 3.959 9 H 0.141 0.859 10 N -0.878 5.878 11 S 2.717 3.283 12 O -0.970 6.970 13 O -0.931 6.931 14 C -0.691 4.691 15 C 0.050 3.950 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.109 4.109 19 N -0.499 5.499 20 Si 0.715 3.285 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.242 4.242 25 C -0.183 4.183 26 C -0.092 4.092 27 C -0.192 4.192 28 C -0.188 4.188 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.240 0.760 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.640 8.152 7.843 16.963 hybrid contribution -0.316 -0.015 -0.146 0.349 sum -12.956 8.137 7.698 17.127 Atomic orbital electron populations 1.22798 0.81239 1.02733 0.99744 1.87888 1.19296 1.26098 1.94229 1.23072 0.93865 0.85174 0.96224 0.90700 1.23620 0.96891 1.00807 0.95369 0.88295 1.21699 1.00897 1.01048 0.96928 1.22391 0.82258 0.96915 0.94352 0.85920 1.56115 1.32628 1.26062 1.72955 1.04703 0.73020 0.73711 0.76865 1.93476 1.54951 1.60772 1.87838 1.93536 1.83097 1.45187 1.71263 1.30027 1.10822 1.07329 1.20924 1.18171 0.93363 0.96167 0.87329 1.20567 1.04033 0.91187 1.42219 0.91405 1.24874 0.95230 0.98215 0.92553 1.69949 1.18707 1.16970 1.44301 0.86626 0.81952 0.80268 0.79692 1.19577 1.21024 1.19472 1.23122 0.99077 0.93484 1.08549 1.22514 0.97149 0.98487 1.00114 1.22427 0.94295 0.96926 0.95586 1.21615 1.02151 0.98456 0.96965 1.21563 1.02426 0.93986 1.00779 0.89611 0.94268 0.94021 0.91085 0.93157 0.91694 0.76011 0.85383 0.88644 0.92591 0.91336 0.89760 0.89694 0.91692 0.92076 0.93109 0.91025 0.92222 0.92123 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.36 -4.25 7.71 -35.23 -0.27 -4.52 16 3 C 0.08 0.83 3.64 -25.92 -0.09 0.73 16 4 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 5 C -0.15 -1.74 3.79 -89.81 -0.34 -2.08 16 6 H 0.10 1.02 7.65 -51.93 -0.40 0.63 16 7 C -0.15 -1.88 9.56 37.16 0.36 -1.52 16 8 C 0.15 2.18 3.25 -67.12 -0.22 1.96 16 9 H 0.12 2.11 7.68 -51.93 -0.40 1.71 16 10 N -1.12 -17.69 5.43 -4.20 -0.02 -17.71 16 11 S 2.62 56.28 4.59 -107.50 -0.49 55.79 16 12 O -0.98 -23.15 18.08 -57.54 -1.04 -24.19 16 13 O -0.94 -23.84 16.75 -57.54 -0.96 -24.80 16 14 C -0.56 -11.86 5.85 37.16 0.22 -11.64 16 15 C 0.05 1.28 1.64 -155.66 -0.26 1.02 16 16 C -0.54 -15.09 6.91 -34.44 -0.24 -15.33 16 17 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 18 C 0.10 2.75 5.39 -17.82 -0.10 2.65 16 19 N -0.87 -24.08 12.95 55.43 0.72 -23.36 16 20 Si 0.89 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.21 -4.52 9.88 -26.73 -0.26 -4.78 16 25 C -0.14 -3.30 9.49 -26.73 -0.25 -3.55 16 26 C -0.09 -1.08 1.35 -153.69 -0.21 -1.29 16 27 C -0.13 -1.70 9.04 37.16 0.34 -1.37 16 28 C -0.13 -1.27 8.01 37.16 0.30 -0.97 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.96 6.97 -51.93 -0.36 0.60 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.90 6.84 -51.93 -0.36 0.55 16 35 H 0.41 5.37 7.11 -34.46 -0.24 5.12 16 36 H 0.13 2.75 7.21 -51.93 -0.37 2.38 16 37 H 0.09 1.70 7.95 -51.92 -0.41 1.28 16 38 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 39 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 40 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.97 6.96 -51.93 -0.36 0.61 16 46 H 0.06 0.50 7.34 -51.93 -0.38 0.12 16 47 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 48 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -33.10 391.51 -9.13 -42.22 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.27 Total: 8.41 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 0.34 Total: -34.80 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.70 Total: -41.08 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -2.28 Total: -53.51 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 56.28 SS G_CDS: -0.49 Total: 55.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.10 -9.13 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590754064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.799 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds