Wall clock time and date at job start Tue Mar 31 2020 17:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00138 * 2 1 4 4 H 1.08999 * 112.91292 * 18.74177 * 3 2 1 5 5 C 1.53784 * 113.61353 * 247.49045 * 3 2 1 6 6 H 1.09002 * 113.61089 * 156.33576 * 5 3 2 7 7 C 1.52998 * 113.69070 * 25.44347 * 5 3 2 8 8 C 1.53774 * 87.08201 * 270.88158 * 5 3 2 9 9 H 1.09001 * 113.61492 * 89.11206 * 8 5 3 10 10 N 1.46499 * 113.69271 * 220.00550 * 8 5 3 11 11 S 1.65595 * 120.00342 * 242.53499 * 10 8 5 12 12 O 1.42098 * 104.27965 * 181.06857 * 11 10 8 13 13 O 1.42101 * 104.27784 * 308.93211 * 11 10 8 14 14 C 1.81405 * 104.44643 * 64.99957 * 11 10 8 15 15 C 1.53006 * 109.46854 * 173.43404 * 14 11 10 16 16 C 1.50697 * 115.55282 * 39.95372 * 15 14 11 17 17 H 1.08000 * 119.99807 * 264.82645 * 16 15 14 18 18 C 1.37873 * 120.00234 * 84.82424 * 16 15 14 19 19 N 1.31520 * 119.99745 * 353.14464 * 18 16 15 20 20 Si 1.86800 * 120.00206 * 173.14451 * 18 16 15 21 21 H 1.48505 * 109.46973 * 90.00103 * 20 18 16 22 22 H 1.48500 * 109.47248 * 210.00211 * 20 18 16 23 23 H 1.48498 * 109.47082 * 330.00311 * 20 18 16 24 24 C 1.53006 * 117.49632 * 254.24080 * 15 14 11 25 25 C 1.52998 * 59.99819 * 252.51534 * 24 15 14 26 26 C 1.53779 * 87.08322 * 334.56697 * 8 5 3 27 27 C 1.53004 * 113.61612 * 139.97814 * 26 8 5 28 28 C 1.52999 * 113.61465 * 270.88140 * 26 8 5 29 29 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47787 * 300.00790 * 1 2 3 31 31 H 1.09002 * 109.46643 * 60.00764 * 1 2 3 32 32 H 1.09003 * 109.46813 * 322.46257 * 7 5 3 33 33 H 1.08999 * 109.46991 * 82.46141 * 7 5 3 34 34 H 1.08994 * 109.47048 * 202.46351 * 7 5 3 35 35 H 0.97002 * 120.00091 * 62.54040 * 10 8 5 36 36 H 1.08997 * 109.47309 * 293.43377 * 14 11 10 37 37 H 1.09000 * 109.46921 * 53.43378 * 14 11 10 38 38 H 0.96997 * 120.00028 * 185.02948 * 19 18 16 39 39 H 1.09006 * 117.49729 * 0.02562 * 24 15 14 40 40 H 1.09006 * 117.49503 * 145.02226 * 24 15 14 41 41 H 1.09006 * 117.49619 * 252.50980 * 25 24 15 42 42 H 1.08997 * 117.51743 * 107.48926 * 25 24 15 43 43 H 1.09000 * 109.47046 * 60.00382 * 27 26 8 44 44 H 1.08998 * 109.47033 * 179.97438 * 27 26 8 45 45 H 1.08995 * 109.47022 * 300.00353 * 27 26 8 46 46 H 1.09000 * 109.47178 * 60.00316 * 28 26 8 47 47 H 1.09010 * 109.47090 * 179.97438 * 28 26 8 48 48 H 1.08994 * 109.47208 * 299.99891 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0798 0.3226 5 6 2.7536 1.6487 -1.3017 6 1 2.8391 2.7196 -1.4862 7 6 2.2484 0.8742 -2.5207 8 6 4.0061 1.0330 -0.6563 9 1 4.1085 -0.0373 -0.8357 10 7 5.2375 1.7766 -0.9340 11 16 6.4684 1.0556 -1.7750 12 8 7.4843 2.0477 -1.8286 13 8 6.6814 -0.1754 -1.0980 14 6 5.7772 0.7625 -3.4264 15 6 6.8772 0.2437 -4.3549 16 6 7.8355 -0.7432 -3.7393 17 1 8.7737 -0.4005 -3.3285 18 6 7.5145 -2.0835 -3.7006 19 7 6.3196 -2.4846 -4.0761 20 14 8.7767 -3.3296 -3.1147 21 1 8.6485 -3.5111 -1.6463 22 1 8.5435 -4.6283 -3.7962 23 1 10.1415 -2.8402 -3.4356 24 6 7.4342 1.2121 -5.4003 25 6 6.5257 0.0595 -5.8325 26 6 3.3755 1.3719 0.7046 27 6 3.5739 0.2825 1.7605 28 6 3.7342 2.7688 1.2155 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.9949 -0.1438 -2.2248 33 1 1.3632 1.3669 -2.9229 34 1 3.0273 0.8478 -3.2827 35 1 5.3318 2.6913 -0.6252 36 1 4.9790 0.0233 -3.3603 37 1 5.3767 1.6952 -3.8234 38 1 6.0685 -3.4166 -3.9804 39 1 7.0174 2.2190 -5.4263 40 1 8.4942 1.1357 -5.6429 41 1 6.9879 -0.7753 -6.3595 42 1 5.5108 0.3075 -6.1431 43 1 4.6399 0.1267 1.9258 44 1 3.1032 0.5911 2.6938 45 1 3.1204 -0.6461 1.4140 46 1 3.3887 3.5165 0.5017 47 1 3.2536 2.9377 2.1793 48 1 4.8153 2.8474 1.3294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590754064.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:18 Heat of formation + Delta-G solvation = -101.851435 kcal Electronic energy + Delta-G solvation = -29076.404137 eV Core-core repulsion = 25259.141046 eV Total energy + Delta-G solvation = -3817.263092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57264 -38.52935 -37.84952 -37.52442 -36.65405 -34.11805 -33.88591 -32.96565 -29.86380 -28.46258 -28.30453 -27.49837 -27.02439 -24.95146 -22.95473 -21.69105 -21.46644 -20.21869 -19.85206 -18.48025 -18.19419 -17.86685 -16.85409 -16.65723 -16.49891 -16.39640 -16.15079 -15.72854 -15.35890 -15.17586 -14.91254 -14.58426 -14.13234 -13.95157 -13.74802 -13.59432 -13.29154 -13.21938 -13.06732 -13.01909 -12.94795 -12.86869 -12.81875 -12.66663 -12.48260 -12.43401 -12.41601 -12.22530 -12.06478 -11.83489 -11.75156 -11.66952 -11.51916 -10.96456 -10.84267 -10.51009 -10.24449 -10.12610 -9.84162 -8.22735 -6.39727 -0.39660 1.33349 1.40105 1.44294 2.18500 2.38886 2.76548 3.05670 3.08834 3.35512 3.44250 3.56504 3.63712 3.75046 3.97385 4.00017 4.25984 4.30336 4.36027 4.47558 4.48625 4.57934 4.60507 4.61800 4.66119 4.71114 4.74518 4.83249 4.86314 4.94835 4.98980 5.00182 5.01390 5.06262 5.14404 5.16647 5.22798 5.26410 5.41884 5.47834 5.50900 5.61198 5.61763 5.68728 6.21260 6.25046 6.41528 6.68724 7.37556 8.83885 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.004628 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.449303 B = 6048.851750 C = 6190.748528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.385 6.385 3 C 0.085 3.915 4 H 0.109 0.891 5 C -0.137 4.137 6 H 0.126 0.874 7 C -0.149 4.149 8 C 0.128 3.872 9 H 0.086 0.914 10 N -1.103 6.103 11 S 2.628 3.372 12 O -1.007 7.007 13 O -0.992 6.992 14 C -0.548 4.548 15 C 0.013 3.987 16 C -0.556 4.556 17 H 0.046 0.954 18 C 0.060 3.940 19 N -0.881 5.881 20 Si 0.922 3.078 21 H -0.282 1.282 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.190 4.190 25 C -0.139 4.139 26 C -0.088 4.088 27 C -0.135 4.135 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.422 0.578 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 11.270 7.760 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.304 6.304 3 C 0.026 3.974 4 H 0.126 0.874 5 C -0.157 4.157 6 H 0.144 0.856 7 C -0.207 4.207 8 C 0.020 3.980 9 H 0.104 0.896 10 N -0.862 5.862 11 S 2.726 3.274 12 O -0.997 6.997 13 O -0.981 6.981 14 C -0.681 4.681 15 C 0.011 3.989 16 C -0.594 4.594 17 H 0.064 0.936 18 C -0.145 4.145 19 N -0.515 5.515 20 Si 0.747 3.253 21 H -0.208 1.208 22 H -0.192 1.192 23 H -0.189 1.189 24 C -0.227 4.227 25 C -0.178 4.178 26 C -0.091 4.091 27 C -0.192 4.192 28 C -0.188 4.188 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.863 10.538 7.992 19.896 hybrid contribution 0.346 -0.763 -0.165 0.853 sum -14.518 9.776 7.827 19.173 Atomic orbital electron populations 1.22973 0.79575 1.03456 1.01024 1.87878 1.21238 1.26972 1.94267 1.23049 0.93762 0.85703 0.94854 0.87366 1.23662 0.94771 1.01816 0.95457 0.85603 1.21689 1.01393 1.00649 0.96926 1.22606 0.82448 0.95280 0.97688 0.89611 1.55499 1.31979 1.26625 1.72078 1.04102 0.73492 0.72695 0.77152 1.93425 1.57013 1.60971 1.88283 1.93474 1.84426 1.47695 1.72528 1.29857 1.09445 1.08843 1.19980 1.18329 0.94562 0.97455 0.88542 1.20705 1.04004 0.92353 1.42336 0.93622 1.25399 0.96550 0.99498 0.93033 1.69981 1.19321 1.17181 1.45063 0.86096 0.80857 0.79627 0.78678 1.20799 1.19230 1.18919 1.23205 0.98953 0.94591 1.05908 1.22450 0.98380 0.98404 0.98571 1.22524 0.94790 0.97956 0.93794 1.21601 1.00694 0.98442 0.98492 1.21617 1.02079 0.92666 1.02425 0.89385 0.92516 0.93063 0.92821 0.90725 0.93309 0.74128 0.86088 0.84762 0.92509 0.88016 0.90245 0.91801 0.89511 0.94311 0.90742 0.92682 0.90034 0.90110 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 113.37 1.23 1.61 16 2 O -0.39 -8.58 7.71 -148.98 -1.15 -9.73 16 3 C 0.09 1.62 3.64 31.12 0.11 1.73 16 4 H 0.11 1.38 7.83 -2.39 -0.02 1.37 16 5 C -0.14 -2.89 3.79 -10.27 -0.04 -2.93 16 6 H 0.13 2.02 7.65 -2.39 -0.02 2.00 16 7 C -0.15 -3.52 9.56 71.98 0.69 -2.83 16 8 C 0.13 3.65 3.25 45.51 0.15 3.80 16 9 H 0.09 3.12 7.68 -2.39 -0.02 3.10 16 10 N -1.10 -33.90 5.43 -167.21 -0.91 -34.81 16 11 S 2.63 114.37 4.59 -56.49 -0.26 114.11 16 12 O -1.01 -47.77 18.08 -127.65 -2.31 -50.08 16 13 O -0.99 -52.60 16.75 -127.65 -2.14 -54.74 16 14 C -0.55 -22.97 5.85 71.98 0.42 -22.55 16 15 C 0.01 0.64 1.64 -52.93 -0.09 0.56 16 16 C -0.56 -31.70 6.91 25.60 0.18 -31.52 16 17 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 18 C 0.06 3.44 5.39 84.65 0.46 3.90 16 19 N -0.88 -50.02 12.95 21.45 0.28 -49.74 16 20 Si 0.92 46.10 29.55 68.60 2.03 48.12 16 21 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 24 C -0.19 -8.05 9.88 30.60 0.30 -7.75 16 25 C -0.14 -6.27 9.49 30.59 0.29 -5.98 16 26 C -0.09 -1.96 1.35 -51.65 -0.07 -2.03 16 27 C -0.13 -3.37 9.04 71.98 0.65 -2.72 16 28 C -0.13 -2.12 8.01 71.98 0.58 -1.54 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 1.44 6.97 -2.39 -0.02 1.42 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.29 6.84 -2.39 -0.02 1.28 16 35 H 0.42 10.38 7.11 -96.75 -0.69 9.69 16 36 H 0.12 5.25 7.21 -2.39 -0.02 5.23 16 37 H 0.13 4.43 7.95 -2.39 -0.02 4.42 16 38 H 0.27 14.44 8.32 -92.71 -0.77 13.67 16 39 H 0.10 3.62 8.08 -2.38 -0.02 3.60 16 40 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 41 H 0.06 3.11 8.14 -2.38 -0.02 3.09 16 42 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 43 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.53 6.96 -2.39 -0.02 1.52 16 46 H 0.08 0.98 7.34 -2.39 -0.02 0.96 16 47 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.06 1.09 7.29 -2.39 -0.02 1.07 16 Total: -1.00 -74.31 391.51 0.65 -73.66 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.25 Total: 31.47 kcal Atomic # 6 Polarization: -73.12 SS G_CDS: 4.86 Total: -68.26 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.63 Total: -84.55 kcal Atomic # 8 Polarization: -108.95 SS G_CDS: -5.59 Total: -114.55 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 114.37 SS G_CDS: -0.26 Total: 114.11 kcal Total: -74.31 0.65 -73.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590754064.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.192 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds