Wall clock time and date at job start Tue Mar 31 2020 17:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00091 * 2 1 4 4 H 1.09000 * 112.84280 * 18.80031 * 3 2 1 5 5 C 1.53774 * 113.68941 * 247.53514 * 3 2 1 6 6 H 1.08990 * 113.61731 * 25.42227 * 5 3 2 7 7 C 1.53007 * 113.60913 * 156.32685 * 5 3 2 8 8 C 1.53781 * 87.08220 * 270.87031 * 5 3 2 9 9 H 1.08996 * 113.69209 * 220.01124 * 8 5 3 10 10 N 1.46498 * 113.61141 * 89.11880 * 8 5 3 11 11 S 1.65597 * 119.99999 * 117.50735 * 10 8 5 12 12 O 1.42109 * 104.27579 * 308.92428 * 11 10 8 13 13 O 1.42102 * 104.28007 * 181.07187 * 11 10 8 14 14 C 1.81402 * 104.45081 * 64.99540 * 11 10 8 15 15 C 1.52999 * 109.46980 * 185.99752 * 14 11 10 16 16 C 1.50702 * 115.56376 * 319.81636 * 15 14 11 17 17 H 1.07997 * 119.99996 * 92.75759 * 16 15 14 18 18 C 1.37883 * 119.99783 * 272.75491 * 16 15 14 19 19 N 1.31516 * 119.99819 * 6.47290 * 18 16 15 20 20 Si 1.86798 * 120.00090 * 186.46754 * 18 16 15 21 21 H 1.48504 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48490 * 109.47092 * 120.00332 * 20 18 16 23 23 H 1.48497 * 109.46875 * 240.00481 * 20 18 16 24 24 C 1.52999 * 117.49888 * 174.12454 * 15 14 11 25 25 C 1.52998 * 60.00224 * 252.51008 * 24 15 14 26 26 C 1.53778 * 113.61331 * 149.99563 * 3 2 1 27 27 C 1.53000 * 113.61737 * 334.65709 * 26 3 2 28 28 C 1.53004 * 113.69049 * 203.76189 * 26 3 2 29 29 H 1.08998 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47788 * 300.00066 * 1 2 3 31 31 H 1.09005 * 109.47119 * 59.99925 * 1 2 3 32 32 H 1.09001 * 109.47017 * 174.52221 * 7 5 3 33 33 H 1.09006 * 109.46727 * 294.51241 * 7 5 3 34 34 H 1.08994 * 109.47628 * 54.51834 * 7 5 3 35 35 H 0.96994 * 120.00319 * 297.50143 * 10 8 5 36 36 H 1.08995 * 109.47098 * 66.00103 * 14 11 10 37 37 H 1.09001 * 109.47211 * 305.99475 * 14 11 10 38 38 H 0.96999 * 119.99968 * 174.98808 * 19 18 16 39 39 H 1.09000 * 117.50179 * 145.02152 * 24 15 14 40 40 H 1.08996 * 117.49830 * 359.97438 * 24 15 14 41 41 H 1.09000 * 117.49852 * 107.48661 * 25 24 15 42 42 H 1.08998 * 117.50350 * 252.48468 * 25 24 15 43 43 H 1.08994 * 109.47204 * 157.49487 * 27 26 3 44 44 H 1.08998 * 109.46969 * 277.49779 * 27 26 3 45 45 H 1.08996 * 109.47031 * 37.49251 * 27 26 3 46 46 H 1.09002 * 109.47080 * 349.01083 * 28 26 3 47 47 H 1.08996 * 109.46644 * 109.01176 * 28 26 3 48 48 H 1.09005 * 109.46905 * 229.01359 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 0.3237 5 6 2.7531 1.6511 -1.3013 6 1 2.3927 1.0995 -2.1695 7 6 2.8721 3.1547 -1.5582 8 6 4.0063 1.0353 -0.6569 9 1 4.9219 1.5895 -0.8629 10 7 4.1447 -0.4027 -0.9001 11 16 5.4479 -0.9780 -1.7444 12 8 5.4745 -0.1905 -2.9271 13 8 5.2353 -2.3818 -1.8037 14 6 6.8746 -0.5941 -0.6919 15 6 8.1654 -0.9456 -1.4343 16 6 8.1289 -2.2230 -2.2331 17 1 7.8586 -2.1987 -3.2784 18 6 8.4408 -3.4227 -1.6293 19 7 8.6455 -3.4719 -0.3311 20 14 8.5724 -4.9782 -2.6551 21 1 8.2992 -4.6568 -4.0790 22 1 9.9410 -5.5401 -2.5288 23 1 7.5819 -5.9742 -2.1732 24 6 9.4894 -0.5668 -0.7676 25 6 8.9983 0.2114 -1.9899 26 6 3.3755 1.3719 0.7046 27 6 3.5748 0.2812 1.7589 28 6 3.7349 2.7676 1.2183 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.4899 3.3249 -2.4400 33 1 1.8798 3.5747 -1.7234 34 1 3.3311 3.6357 -0.6946 35 1 3.4731 -1.0179 -0.5664 36 1 6.8146 -1.1759 0.2278 37 1 6.8723 0.4688 -0.4503 38 1 8.7929 -4.3258 0.1047 39 1 10.3340 -1.2416 -0.9066 40 1 9.4408 -0.0669 0.1997 41 1 8.6266 1.2230 -1.8264 42 1 9.5200 0.0490 -2.9330 43 1 4.6410 0.1259 1.9238 44 1 3.1036 0.5880 2.6926 45 1 3.1219 -0.6472 1.4112 46 1 3.0325 3.4960 0.8131 47 1 3.6822 2.7787 2.3069 48 1 4.7461 3.0223 0.9008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590754066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:27 Heat of formation + Delta-G solvation = -70.216050 kcal Electronic energy + Delta-G solvation = -28977.552151 eV Core-core repulsion = 25161.660872 eV Total energy + Delta-G solvation = -3815.891279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85004 -36.69948 -36.67193 -35.95062 -34.82331 -32.89589 -31.98949 -31.74267 -28.23739 -28.06584 -26.82114 -26.29160 -25.40864 -24.22305 -21.15335 -20.95226 -19.65892 -18.81785 -18.51320 -16.96537 -16.45019 -16.24244 -15.97740 -15.61475 -15.30007 -14.94663 -14.54779 -14.23066 -14.02200 -13.76429 -13.60610 -13.13982 -12.98279 -12.89375 -12.63551 -12.39217 -12.26421 -12.15773 -11.98379 -11.76844 -11.49262 -11.31928 -11.15562 -11.02912 -10.95976 -10.92906 -10.90132 -10.83453 -10.51869 -10.46645 -10.30405 -10.05014 -9.93296 -9.64100 -9.35189 -8.99224 -8.80199 -8.48396 -8.06007 -6.11171 -4.25360 1.29381 3.34351 3.40925 3.43258 3.48871 3.74604 4.36155 4.42258 4.44150 4.59903 4.82796 4.88214 5.05752 5.08479 5.12316 5.19720 5.21536 5.22915 5.31579 5.33586 5.42772 5.44236 5.51727 5.59115 5.60109 5.74849 5.80077 5.83872 5.87118 6.01433 6.02969 6.08225 6.16814 6.32501 6.35320 6.39189 6.45396 6.57168 6.66839 6.74523 7.00992 7.14894 7.23648 7.44892 7.58630 7.83313 8.23340 8.83166 9.51241 10.96386 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.004326 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.853884 B = 6470.641899 C = 6993.783089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.076 3.924 4 H 0.072 0.928 5 C -0.145 4.145 6 H 0.089 0.911 7 C -0.147 4.147 8 C 0.153 3.847 9 H 0.095 0.905 10 N -1.110 6.110 11 S 2.623 3.377 12 O -0.975 6.975 13 O -0.945 6.945 14 C -0.559 4.559 15 C 0.049 3.951 16 C -0.540 4.540 17 H 0.069 0.931 18 C 0.095 3.905 19 N -0.867 5.867 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.278 1.278 24 C -0.141 4.141 25 C -0.205 4.205 26 C -0.097 4.097 27 C -0.132 4.132 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.264 0.736 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 13.028 5.657 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.018 3.982 4 H 0.090 0.910 5 C -0.166 4.166 6 H 0.107 0.893 7 C -0.204 4.204 8 C 0.043 3.957 9 H 0.113 0.887 10 N -0.865 5.865 11 S 2.720 3.280 12 O -0.965 6.965 13 O -0.935 6.935 14 C -0.692 4.692 15 C 0.047 3.953 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.111 4.111 19 N -0.502 5.502 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.203 1.203 24 C -0.180 4.180 25 C -0.242 4.242 26 C -0.099 4.099 27 C -0.189 4.189 28 C -0.192 4.192 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.426 12.401 4.881 18.918 hybrid contribution -0.208 -0.683 0.405 0.821 sum -13.635 11.718 5.285 18.739 Atomic orbital electron populations 1.22789 0.81129 1.02776 0.99704 1.87831 1.19380 1.26505 1.94383 1.23327 0.93737 0.84844 0.96294 0.90966 1.23371 0.97734 0.97012 0.98491 0.89268 1.21856 1.02102 0.93348 1.03098 1.21631 0.97812 0.81843 0.94399 0.88661 1.55907 1.42016 1.12619 1.75937 1.04637 0.74337 0.73932 0.75126 1.93478 1.86573 1.72114 1.44323 1.93542 1.84028 1.29943 1.85966 1.29997 1.17098 1.07112 1.14952 1.18189 0.86193 0.93460 0.97459 1.20624 1.50813 0.89740 0.96535 0.91305 1.24904 0.92306 0.99050 0.94881 1.69971 1.45694 1.25826 1.08675 0.86515 0.77430 0.82973 0.81191 1.19197 1.20872 1.20316 1.22493 1.00167 1.01768 0.93574 1.23132 1.07479 0.95156 0.98451 1.22515 0.95047 0.96861 0.95485 1.21583 1.02017 0.98590 0.96756 1.21861 1.02205 0.93930 1.01171 0.89571 0.94193 0.94133 0.91543 0.92458 0.90796 0.74825 0.85472 0.88822 0.92654 0.89602 0.91699 0.91362 0.89741 0.92147 0.93020 0.91112 0.91234 0.91936 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.38 16 2 O -0.36 -4.35 7.78 -35.23 -0.27 -4.62 16 3 C 0.08 0.83 3.36 -25.92 -0.09 0.74 16 4 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 5 C -0.15 -1.76 4.18 -89.81 -0.38 -2.14 16 6 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 7 C -0.15 -1.38 9.33 37.16 0.35 -1.04 16 8 C 0.15 2.11 3.39 -67.12 -0.23 1.88 16 9 H 0.10 1.28 7.35 -51.93 -0.38 0.90 16 10 N -1.11 -18.58 4.92 -4.20 -0.02 -18.60 16 11 S 2.62 57.27 4.59 -107.50 -0.49 56.78 16 12 O -0.97 -23.20 17.82 -57.54 -1.03 -24.23 16 13 O -0.94 -24.36 17.21 -57.54 -0.99 -25.35 16 14 C -0.56 -11.97 6.18 37.16 0.23 -11.74 16 15 C 0.05 1.22 1.68 -155.66 -0.26 0.96 16 16 C -0.54 -15.15 6.91 -34.44 -0.24 -15.39 16 17 H 0.07 1.99 7.82 -52.49 -0.41 1.58 16 18 C 0.10 2.69 5.38 -17.82 -0.10 2.59 16 19 N -0.87 -24.46 12.83 55.43 0.71 -23.75 16 20 Si 0.89 22.31 29.55 -169.99 -5.02 17.29 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 C -0.14 -3.26 9.34 -26.73 -0.25 -3.51 16 25 C -0.20 -4.51 9.88 -26.73 -0.26 -4.77 16 26 C -0.10 -1.07 1.34 -153.69 -0.21 -1.28 16 27 C -0.13 -1.55 8.34 37.16 0.31 -1.24 16 28 C -0.13 -1.14 8.14 37.16 0.30 -0.83 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.59 4.37 -51.93 -0.23 0.36 16 35 H 0.42 6.72 6.37 -34.46 -0.22 6.50 16 36 H 0.13 2.77 8.14 -51.93 -0.42 2.34 16 37 H 0.09 1.65 7.52 -51.92 -0.39 1.26 16 38 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 39 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 42 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.52 8.02 -51.93 -0.42 0.11 16 45 H 0.07 0.91 5.88 -51.93 -0.31 0.61 16 46 H 0.07 0.48 5.56 -51.93 -0.29 0.20 16 47 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 48 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -33.74 386.46 -9.07 -42.80 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.06 Total: 8.24 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 0.28 Total: -34.38 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.69 Total: -42.36 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.29 Total: -54.20 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 57.27 SS G_CDS: -0.49 Total: 56.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.74 -9.07 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590754066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.411 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds