Wall clock time and date at job start Tue Mar 31 2020 17:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 114.00091 * 2 1 4 4 H 1.09000 * 112.84280 * 18.80031 * 3 2 1 5 5 C 1.53774 * 113.68941 * 247.53514 * 3 2 1 6 6 H 1.08990 * 113.61731 * 25.42227 * 5 3 2 7 7 C 1.53007 * 113.60913 * 156.32685 * 5 3 2 8 8 C 1.53781 * 87.08220 * 270.87031 * 5 3 2 9 9 H 1.08996 * 113.69209 * 220.01124 * 8 5 3 10 10 N 1.46498 * 113.61141 * 89.11880 * 8 5 3 11 11 S 1.65597 * 119.99999 * 117.50735 * 10 8 5 12 12 O 1.42109 * 104.27579 * 308.92428 * 11 10 8 13 13 O 1.42102 * 104.28007 * 181.07187 * 11 10 8 14 14 C 1.81402 * 104.45081 * 64.99540 * 11 10 8 15 15 C 1.52999 * 109.46980 * 185.99752 * 14 11 10 16 16 C 1.50702 * 115.56376 * 319.81636 * 15 14 11 17 17 H 1.07997 * 119.99996 * 92.75759 * 16 15 14 18 18 C 1.37883 * 119.99783 * 272.75491 * 16 15 14 19 19 N 1.31516 * 119.99819 * 6.47290 * 18 16 15 20 20 Si 1.86798 * 120.00090 * 186.46754 * 18 16 15 21 21 H 1.48504 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48490 * 109.47092 * 120.00332 * 20 18 16 23 23 H 1.48497 * 109.46875 * 240.00481 * 20 18 16 24 24 C 1.52999 * 117.49888 * 174.12454 * 15 14 11 25 25 C 1.52998 * 60.00224 * 252.51008 * 24 15 14 26 26 C 1.53778 * 113.61331 * 149.99563 * 3 2 1 27 27 C 1.53000 * 113.61737 * 334.65709 * 26 3 2 28 28 C 1.53004 * 113.69049 * 203.76189 * 26 3 2 29 29 H 1.08998 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47788 * 300.00066 * 1 2 3 31 31 H 1.09005 * 109.47119 * 59.99925 * 1 2 3 32 32 H 1.09001 * 109.47017 * 174.52221 * 7 5 3 33 33 H 1.09006 * 109.46727 * 294.51241 * 7 5 3 34 34 H 1.08994 * 109.47628 * 54.51834 * 7 5 3 35 35 H 0.96994 * 120.00319 * 297.50143 * 10 8 5 36 36 H 1.08995 * 109.47098 * 66.00103 * 14 11 10 37 37 H 1.09001 * 109.47211 * 305.99475 * 14 11 10 38 38 H 0.96999 * 119.99968 * 174.98808 * 19 18 16 39 39 H 1.09000 * 117.50179 * 145.02152 * 24 15 14 40 40 H 1.08996 * 117.49830 * 359.97438 * 24 15 14 41 41 H 1.09000 * 117.49852 * 107.48661 * 25 24 15 42 42 H 1.08998 * 117.50350 * 252.48468 * 25 24 15 43 43 H 1.08994 * 109.47204 * 157.49487 * 27 26 3 44 44 H 1.08998 * 109.46969 * 277.49779 * 27 26 3 45 45 H 1.08996 * 109.47031 * 37.49251 * 27 26 3 46 46 H 1.09002 * 109.47080 * 349.01083 * 28 26 3 47 47 H 1.08996 * 109.46644 * 109.01176 * 28 26 3 48 48 H 1.09005 * 109.46905 * 229.01359 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 0.3237 5 6 2.7531 1.6511 -1.3013 6 1 2.3927 1.0995 -2.1695 7 6 2.8721 3.1547 -1.5582 8 6 4.0063 1.0353 -0.6569 9 1 4.9219 1.5895 -0.8629 10 7 4.1447 -0.4027 -0.9001 11 16 5.4479 -0.9780 -1.7444 12 8 5.4745 -0.1905 -2.9271 13 8 5.2353 -2.3818 -1.8037 14 6 6.8746 -0.5941 -0.6919 15 6 8.1654 -0.9456 -1.4343 16 6 8.1289 -2.2230 -2.2331 17 1 7.8586 -2.1987 -3.2784 18 6 8.4408 -3.4227 -1.6293 19 7 8.6455 -3.4719 -0.3311 20 14 8.5724 -4.9782 -2.6551 21 1 8.2992 -4.6568 -4.0790 22 1 9.9410 -5.5401 -2.5288 23 1 7.5819 -5.9742 -2.1732 24 6 9.4894 -0.5668 -0.7676 25 6 8.9983 0.2114 -1.9899 26 6 3.3755 1.3719 0.7046 27 6 3.5748 0.2812 1.7589 28 6 3.7349 2.7676 1.2183 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.4899 3.3249 -2.4400 33 1 1.8798 3.5747 -1.7234 34 1 3.3311 3.6357 -0.6946 35 1 3.4731 -1.0179 -0.5664 36 1 6.8146 -1.1759 0.2278 37 1 6.8723 0.4688 -0.4503 38 1 8.7929 -4.3258 0.1047 39 1 10.3340 -1.2416 -0.9066 40 1 9.4408 -0.0669 0.1997 41 1 8.6266 1.2230 -1.8264 42 1 9.5200 0.0490 -2.9330 43 1 4.6410 0.1259 1.9238 44 1 3.1036 0.5880 2.6926 45 1 3.1219 -0.6472 1.4112 46 1 3.0325 3.4960 0.8131 47 1 3.6822 2.7787 2.3069 48 1 4.7461 3.0223 0.9008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590754066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:26 Heat of formation + Delta-G solvation = -93.525069 kcal Electronic energy + Delta-G solvation = -28978.562906 eV Core-core repulsion = 25161.660872 eV Total energy + Delta-G solvation = -3816.902034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74937 -38.53725 -37.84534 -37.48641 -36.67620 -34.18957 -34.04613 -32.57307 -29.88996 -28.89088 -27.61652 -27.51420 -27.06589 -25.18775 -22.94371 -21.80633 -21.51129 -20.18895 -19.83032 -18.54033 -18.16958 -17.27691 -17.15718 -16.92892 -16.56664 -16.48241 -16.17974 -15.78935 -15.48664 -14.97458 -14.78879 -14.58093 -13.98019 -13.86388 -13.74403 -13.69329 -13.38352 -13.20908 -13.08379 -13.04252 -12.91713 -12.84942 -12.82944 -12.80899 -12.59765 -12.45874 -12.35567 -12.08389 -12.04342 -11.87754 -11.77815 -11.56890 -11.31262 -10.93463 -10.82678 -10.51420 -10.20341 -10.11191 -9.85860 -8.23906 -6.41056 -0.41238 1.32535 1.37839 1.46650 2.12414 2.38247 2.75797 3.05295 3.08847 3.32363 3.46932 3.55828 3.62935 3.75453 4.00670 4.03033 4.20592 4.32360 4.36841 4.40825 4.50572 4.55274 4.58697 4.59456 4.61378 4.68517 4.79668 4.85408 4.87157 4.89508 4.99790 5.03298 5.04553 5.12105 5.15746 5.20518 5.23247 5.28798 5.41687 5.53739 5.55372 5.62396 5.63002 5.67606 6.19719 6.25282 6.40031 6.68046 7.36169 8.83137 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.004326 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.853884 B = 6470.641899 C = 6993.783089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.390 6.390 3 C 0.080 3.920 4 H 0.100 0.900 5 C -0.147 4.147 6 H 0.061 0.939 7 C -0.144 4.144 8 C 0.124 3.876 9 H 0.099 0.901 10 N -1.097 6.097 11 S 2.632 3.368 12 O -1.002 7.002 13 O -0.996 6.996 14 C -0.548 4.548 15 C 0.009 3.991 16 C -0.554 4.554 17 H 0.045 0.955 18 C 0.056 3.944 19 N -0.884 5.884 20 Si 0.927 3.073 21 H -0.272 1.272 22 H -0.264 1.264 23 H -0.279 1.279 24 C -0.136 4.136 25 C -0.188 4.188 26 C -0.086 4.086 27 C -0.135 4.135 28 C -0.135 4.135 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.419 0.581 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 15.624 7.136 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.309 6.309 3 C 0.022 3.978 4 H 0.118 0.882 5 C -0.168 4.168 6 H 0.080 0.920 7 C -0.201 4.201 8 C 0.016 3.984 9 H 0.117 0.883 10 N -0.855 5.855 11 S 2.729 3.271 12 O -0.991 6.991 13 O -0.986 6.986 14 C -0.681 4.681 15 C 0.007 3.993 16 C -0.592 4.592 17 H 0.063 0.937 18 C -0.148 4.148 19 N -0.519 5.519 20 Si 0.752 3.248 21 H -0.197 1.197 22 H -0.189 1.189 23 H -0.205 1.205 24 C -0.175 4.175 25 C -0.225 4.225 26 C -0.088 4.088 27 C -0.192 4.192 28 C -0.192 4.192 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.256 0.744 36 H 0.139 0.861 37 H 0.153 0.847 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.287 14.997 6.347 21.663 hybrid contribution 0.005 -1.452 -0.069 1.453 sum -14.281 13.545 6.278 20.660 Atomic orbital electron populations 1.22952 0.79674 1.03446 1.00852 1.87803 1.21136 1.27525 1.94445 1.23382 0.94212 0.85134 0.95085 0.88180 1.23435 0.96856 0.98435 0.98093 0.92005 1.21888 1.03335 0.91332 1.03535 1.22147 0.99076 0.79745 0.97450 0.88291 1.55388 1.40292 1.14418 1.75439 1.04038 0.75095 0.72672 0.75259 1.93433 1.87248 1.72201 1.46263 1.93465 1.85034 1.33145 1.86941 1.29809 1.14975 1.09621 1.13737 1.18345 0.88184 0.93622 0.99104 1.20758 1.50693 0.91817 0.95927 0.93659 1.25446 0.92472 1.01095 0.95830 1.69998 1.46420 1.26352 1.09164 0.85976 0.78220 0.80708 0.79867 1.19682 1.18909 1.20455 1.22430 0.98289 1.01640 0.95143 1.23215 1.05595 0.95955 0.97773 1.22528 0.94543 0.98162 0.93541 1.21598 1.01459 0.98295 0.97884 1.21918 1.02963 0.92244 1.02052 0.89332 0.92320 0.93594 0.92620 0.90543 0.88758 0.74441 0.86056 0.84728 0.92437 0.91809 0.89404 0.87885 0.90262 0.92983 0.91130 0.92913 0.89263 0.90671 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.85 113.37 1.23 1.66 16 2 O -0.39 -8.90 7.78 -148.98 -1.16 -10.06 16 3 C 0.08 1.53 3.36 31.12 0.10 1.64 16 4 H 0.10 1.36 7.66 -2.39 -0.02 1.34 16 5 C -0.15 -3.34 4.18 -10.27 -0.04 -3.38 16 6 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.14 -2.30 9.33 71.98 0.67 -1.63 16 8 C 0.12 3.25 3.39 45.52 0.15 3.41 16 9 H 0.10 2.46 7.35 -2.39 -0.02 2.45 16 10 N -1.10 -36.90 4.92 -167.19 -0.82 -37.72 16 11 S 2.63 116.96 4.59 -56.49 -0.26 116.70 16 12 O -1.00 -48.50 17.82 -127.65 -2.27 -50.77 16 13 O -1.00 -53.46 17.21 -127.65 -2.20 -55.65 16 14 C -0.55 -23.05 6.18 71.98 0.44 -22.61 16 15 C 0.01 0.47 1.68 -52.93 -0.09 0.38 16 16 C -0.55 -31.78 6.91 25.60 0.18 -31.60 16 17 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 18 C 0.06 3.22 5.38 84.66 0.46 3.68 16 19 N -0.88 -50.40 12.83 21.45 0.28 -50.13 16 20 Si 0.93 46.26 29.55 68.60 2.03 48.29 16 21 H -0.27 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 24 C -0.14 -6.13 9.34 30.59 0.29 -5.84 16 25 C -0.19 -7.96 9.88 30.59 0.30 -7.66 16 26 C -0.09 -1.67 1.34 -51.65 -0.07 -1.74 16 27 C -0.13 -2.93 8.34 71.98 0.60 -2.33 16 28 C -0.13 -1.72 8.14 71.98 0.59 -1.13 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.65 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 1.11 4.37 -2.39 -0.01 1.10 16 35 H 0.42 13.86 6.37 -96.76 -0.62 13.25 16 36 H 0.12 5.25 8.14 -2.39 -0.02 5.23 16 37 H 0.13 4.40 7.52 -2.39 -0.02 4.39 16 38 H 0.27 14.42 8.32 -92.71 -0.77 13.65 16 39 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 41 H 0.10 3.61 8.09 -2.39 -0.02 3.59 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.24 8.02 -2.39 -0.02 1.22 16 45 H 0.05 1.33 5.88 -2.39 -0.01 1.31 16 46 H 0.09 0.80 5.56 -2.39 -0.01 0.78 16 47 H 0.07 0.81 7.79 -2.39 -0.02 0.80 16 48 H 0.07 0.89 7.86 -2.38 -0.02 0.88 16 Total: -1.00 -74.84 386.46 0.73 -74.11 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.33 Total: 32.40 kcal Atomic # 6 Polarization: -71.98 SS G_CDS: 4.81 Total: -67.17 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -0.55 Total: -87.85 kcal Atomic # 8 Polarization: -110.85 SS G_CDS: -5.63 Total: -116.48 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 116.96 SS G_CDS: -0.26 Total: 116.70 kcal Total: -74.84 0.73 -74.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590754066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.417 kcal (2) G-P(sol) polarization free energy of solvation -74.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds