Wall clock time and date at job start Tue Mar 31 2020 17:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.86816 * 2 1 4 4 C 1.54478 * 109.87665 * 238.99911 * 2 1 3 5 5 C 1.54289 * 102.86480 * 219.14588 * 4 2 1 6 6 C 1.54066 * 102.57053 * 34.55548 * 5 4 2 7 7 N 1.47088 * 109.87923 * 121.15901 * 2 1 3 8 8 S 1.65596 * 125.62804 * 298.42255 * 7 2 1 9 9 O 1.42103 * 104.27669 * 26.09911 * 8 7 2 10 10 O 1.42094 * 104.27762 * 153.95342 * 8 7 2 11 11 C 1.81401 * 104.45018 * 270.02868 * 8 7 2 12 12 C 1.53001 * 109.47005 * 179.97438 * 11 8 7 13 13 C 1.53004 * 109.47144 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.46799 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00426 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99213 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99353 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47110 * 60.00222 * 18 16 14 20 20 H 1.48504 * 109.46519 * 179.97438 * 18 16 14 21 21 H 1.48488 * 109.47406 * 299.99822 * 18 16 14 22 22 C 1.52179 * 110.65755 * 152.73026 * 5 4 2 23 23 C 1.53279 * 109.24329 * 178.15675 * 22 5 4 24 24 O 1.42924 * 109.29248 * 303.86297 * 23 22 5 25 25 C 1.42922 * 114.26207 * 61.85118 * 24 23 22 26 26 C 1.52189 * 110.65081 * 276.38776 * 5 4 2 27 27 H 1.09006 * 109.46975 * 181.00554 * 1 2 3 28 28 H 1.09000 * 109.46488 * 301.00003 * 1 2 3 29 29 H 1.08997 * 109.47559 * 61.00069 * 1 2 3 30 30 H 1.09000 * 110.73773 * 100.80281 * 4 2 1 31 31 H 1.08999 * 110.88948 * 337.56417 * 4 2 1 32 32 H 1.08999 * 110.37676 * 82.82496 * 6 5 4 33 33 H 1.08998 * 110.37943 * 205.18304 * 6 5 4 34 34 H 1.08997 * 109.46930 * 299.99858 * 11 8 7 35 35 H 1.08999 * 109.47137 * 59.99972 * 11 8 7 36 36 H 1.09005 * 109.47213 * 299.99419 * 12 11 8 37 37 H 1.08999 * 109.47195 * 60.00009 * 12 11 8 38 38 H 1.08997 * 109.46826 * 299.99880 * 13 12 11 39 39 H 1.08999 * 109.47102 * 59.99910 * 13 12 11 40 40 H 0.97004 * 119.99633 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.50989 * 298.08445 * 22 5 4 42 42 H 1.08994 * 109.50662 * 58.22878 * 22 5 4 43 43 H 1.08998 * 109.49664 * 183.92150 * 23 22 5 44 44 H 1.09000 * 109.50039 * 63.81402 * 23 22 5 45 45 H 1.08999 * 109.49825 * 178.20244 * 25 24 23 46 46 H 1.09003 * 109.53010 * 58.11035 * 25 24 23 47 47 H 1.08996 * 109.50435 * 301.77082 * 26 5 4 48 48 H 1.09002 * 109.50693 * 61.85853 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0552 -0.7482 -1.2452 5 6 3.2691 -1.5243 -0.6931 6 6 2.8171 -1.8812 0.7359 7 7 2.0302 -0.7157 1.1837 8 16 1.7557 -0.2848 2.7589 9 8 0.5323 0.4368 2.7167 10 8 1.8620 -1.5048 3.4795 11 6 3.1330 0.8209 3.1723 12 6 2.9907 1.2933 4.6205 13 6 4.1521 2.2265 4.9691 14 6 4.0122 2.6912 6.3958 15 1 3.1782 2.3551 6.9940 16 6 4.9486 3.5465 6.9370 17 7 5.9638 3.9563 6.2084 18 14 4.7748 4.1232 8.7053 19 1 4.7948 2.9484 9.6134 20 1 5.9021 5.0288 9.0435 21 1 3.4901 4.8504 8.8649 22 6 3.5181 -2.7836 -1.5104 23 6 4.7558 -3.5040 -0.9640 24 8 5.8682 -2.6066 -0.9761 25 6 5.6992 -1.4507 -0.1527 26 6 4.5048 -0.6365 -0.6620 27 1 -0.3633 -1.0276 0.0180 28 1 -0.3632 0.5293 0.8809 29 1 -0.3634 0.4982 -0.8988 30 1 2.3661 -0.0434 -2.0164 31 1 1.3022 -1.4345 -1.6327 32 1 2.1961 -2.7769 0.7249 33 1 3.6824 -2.0260 1.3826 34 1 4.0757 0.2866 3.0549 35 1 3.1190 1.6835 2.5061 36 1 2.0480 1.8279 4.7374 37 1 3.0045 0.4310 5.2870 38 1 5.0950 1.6924 4.8521 39 1 4.1379 3.0888 4.3025 40 1 6.6223 4.5583 6.5892 41 1 2.6522 -3.4418 -1.4379 42 1 3.6848 -2.5137 -2.5532 43 1 4.9790 -4.3686 -1.5890 44 1 4.5642 -3.8324 0.0576 45 1 6.6007 -0.8394 -0.1944 46 1 5.5165 -1.7599 0.8764 47 1 4.7154 -0.2707 -1.6669 48 1 4.3291 0.2087 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592104308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:13 Heat of formation + Delta-G solvation = -137.376812 kcal Electronic energy + Delta-G solvation = -28122.723327 eV Core-core repulsion = 24303.919739 eV Total energy + Delta-G solvation = -3818.803588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80081 -37.95291 -36.96192 -35.78160 -34.69799 -33.69687 -32.20753 -31.51864 -31.31711 -28.07543 -27.82660 -25.83779 -24.00677 -23.73072 -23.31407 -21.46036 -20.53354 -19.21337 -18.66088 -17.58894 -16.76016 -16.40067 -16.30521 -16.13732 -15.74351 -15.34796 -15.06050 -14.62700 -14.48552 -14.36292 -13.90392 -13.84538 -13.60459 -12.91750 -12.82394 -12.60197 -12.55515 -12.33991 -12.26227 -11.96769 -11.81532 -11.80530 -11.73896 -11.66254 -11.48366 -11.30886 -11.27706 -10.92536 -10.91259 -10.81870 -10.72530 -10.43677 -10.38261 -9.97663 -9.65904 -9.53211 -9.25872 -8.93512 -8.42180 -6.07291 -4.10551 0.38090 2.71196 3.31050 3.34951 3.38134 3.63188 3.92476 3.97500 4.09183 4.32576 4.40226 4.41244 4.68433 4.72259 4.84449 4.88627 4.89710 5.03121 5.06514 5.13753 5.15286 5.24900 5.29109 5.31179 5.39545 5.44013 5.44985 5.54996 5.56198 5.60464 5.65309 5.76966 5.83021 5.85707 5.91243 5.97887 6.12163 6.20887 6.35619 6.35809 6.41484 6.84188 6.94750 7.54236 7.64217 7.90331 8.30789 8.95316 9.54223 11.03848 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003246 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.519115 B = 8623.485602 C = 9728.236344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.151 3.849 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.073 4.073 6 C 0.130 3.870 7 N -1.012 6.012 8 S 2.610 3.390 9 O -0.953 6.953 10 O -0.958 6.958 11 C -0.609 4.609 12 C -0.105 4.105 13 C 0.032 3.968 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.138 4.138 23 C 0.057 3.943 24 O -0.382 6.382 25 C 0.056 3.944 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -12.652 -20.051 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.045 3.955 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.074 4.074 6 C 0.005 3.995 7 N -0.848 5.848 8 S 2.709 3.291 9 O -0.944 6.944 10 O -0.949 6.949 11 C -0.741 4.741 12 C -0.145 4.145 13 C -0.006 4.006 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.176 4.176 23 C -0.020 4.020 24 O -0.301 6.301 25 C -0.021 4.021 26 C -0.179 4.179 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.702 -12.862 -19.543 24.081 hybrid contribution 0.357 0.816 0.898 1.265 sum -5.345 -12.046 -18.645 22.832 Atomic orbital electron populations 1.22530 0.94578 1.02888 1.04178 1.21306 0.94448 0.95487 0.84291 0.90700 1.22704 0.96646 0.99133 0.96609 1.21136 0.95455 0.95885 0.94936 1.21993 0.94612 0.88416 0.94482 1.58903 1.66555 1.37170 1.22180 1.05125 0.76900 0.75566 0.71516 1.93522 1.40866 1.75182 1.84831 1.93562 1.87677 1.43181 1.70473 1.30604 1.18833 1.15576 1.09098 1.21502 1.03407 1.01345 0.88223 1.19049 0.91550 0.93404 0.96632 1.21216 1.09709 1.28264 0.97432 0.92427 1.25014 0.95172 0.96094 0.98010 1.69944 1.12895 1.33965 1.36596 0.86615 0.77673 0.78714 0.84797 1.20100 1.21216 1.20103 1.22025 0.99065 0.96268 1.00276 1.22658 0.86211 0.92308 1.00829 1.87929 1.39933 1.33747 1.68498 1.22715 0.98719 0.86897 0.93766 1.22043 0.94077 0.98693 1.03127 0.92479 0.88978 0.91825 0.90052 0.90266 0.91100 0.90716 0.85650 0.85488 0.91586 0.91662 0.96157 0.96137 0.92821 0.90435 0.90518 0.88829 0.92872 0.88408 0.92774 0.90523 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.98 37.16 0.33 -1.54 16 2 C 0.15 1.45 3.38 -66.83 -0.23 1.22 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -0.81 5.43 -25.28 -0.14 -0.95 16 5 C -0.07 -0.56 0.54 -154.11 -0.08 -0.65 16 6 C 0.13 1.28 5.04 -2.89 -0.01 1.26 16 7 N -1.01 -11.56 3.30 -104.66 -0.35 -11.91 16 8 S 2.61 39.14 5.64 -107.50 -0.61 38.54 16 9 O -0.95 -16.31 15.01 -57.54 -0.86 -17.17 16 10 O -0.96 -17.08 17.60 -57.54 -1.01 -18.10 16 11 C -0.61 -9.42 6.18 37.16 0.23 -9.19 16 12 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 13 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 14 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 C -0.14 -0.91 4.89 -27.01 -0.13 -1.04 16 23 C 0.06 0.43 6.68 37.30 0.25 0.68 16 24 O -0.38 -3.81 10.74 -35.23 -0.38 -4.19 16 25 C 0.06 0.50 6.66 37.30 0.25 0.75 16 26 C -0.14 -1.16 4.83 -27.01 -0.13 -1.29 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.19 5.68 -51.93 -0.30 0.89 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.49 8.01 -51.93 -0.42 0.08 16 31 H 0.08 0.52 7.71 -51.93 -0.40 0.12 16 32 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 33 H 0.07 0.73 6.40 -51.93 -0.33 0.40 16 34 H 0.13 1.74 8.14 -51.93 -0.42 1.31 16 35 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 0.43 8.01 -51.93 -0.42 0.02 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.49 6.65 -51.93 -0.35 0.15 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -34.13 381.59 -10.55 -44.68 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.46 Total: -2.44 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -0.35 Total: -25.95 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.39 Total: -37.65 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -2.25 Total: -39.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 39.14 SS G_CDS: -0.61 Total: 38.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.13 -10.55 -44.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592104308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.699 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds