Wall clock time and date at job start Tue Mar 31 2020 17:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.86816 * 2 1 4 4 C 1.54478 * 109.87665 * 238.99911 * 2 1 3 5 5 C 1.54289 * 102.86480 * 219.14588 * 4 2 1 6 6 C 1.54066 * 102.57053 * 34.55548 * 5 4 2 7 7 N 1.47088 * 109.87923 * 121.15901 * 2 1 3 8 8 S 1.65596 * 125.62804 * 298.42255 * 7 2 1 9 9 O 1.42103 * 104.27669 * 26.09911 * 8 7 2 10 10 O 1.42094 * 104.27762 * 153.95342 * 8 7 2 11 11 C 1.81401 * 104.45018 * 270.02868 * 8 7 2 12 12 C 1.53001 * 109.47005 * 179.97438 * 11 8 7 13 13 C 1.53004 * 109.47144 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.46799 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00426 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99213 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99353 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47110 * 60.00222 * 18 16 14 20 20 H 1.48504 * 109.46519 * 179.97438 * 18 16 14 21 21 H 1.48488 * 109.47406 * 299.99822 * 18 16 14 22 22 C 1.52179 * 110.65755 * 152.73026 * 5 4 2 23 23 C 1.53279 * 109.24329 * 178.15675 * 22 5 4 24 24 O 1.42924 * 109.29248 * 303.86297 * 23 22 5 25 25 C 1.42922 * 114.26207 * 61.85118 * 24 23 22 26 26 C 1.52189 * 110.65081 * 276.38776 * 5 4 2 27 27 H 1.09006 * 109.46975 * 181.00554 * 1 2 3 28 28 H 1.09000 * 109.46488 * 301.00003 * 1 2 3 29 29 H 1.08997 * 109.47559 * 61.00069 * 1 2 3 30 30 H 1.09000 * 110.73773 * 100.80281 * 4 2 1 31 31 H 1.08999 * 110.88948 * 337.56417 * 4 2 1 32 32 H 1.08999 * 110.37676 * 82.82496 * 6 5 4 33 33 H 1.08998 * 110.37943 * 205.18304 * 6 5 4 34 34 H 1.08997 * 109.46930 * 299.99858 * 11 8 7 35 35 H 1.08999 * 109.47137 * 59.99972 * 11 8 7 36 36 H 1.09005 * 109.47213 * 299.99419 * 12 11 8 37 37 H 1.08999 * 109.47195 * 60.00009 * 12 11 8 38 38 H 1.08997 * 109.46826 * 299.99880 * 13 12 11 39 39 H 1.08999 * 109.47102 * 59.99910 * 13 12 11 40 40 H 0.97004 * 119.99633 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.50989 * 298.08445 * 22 5 4 42 42 H 1.08994 * 109.50662 * 58.22878 * 22 5 4 43 43 H 1.08998 * 109.49664 * 183.92150 * 23 22 5 44 44 H 1.09000 * 109.50039 * 63.81402 * 23 22 5 45 45 H 1.08999 * 109.49825 * 178.20244 * 25 24 23 46 46 H 1.09003 * 109.53010 * 58.11035 * 25 24 23 47 47 H 1.08996 * 109.50435 * 301.77082 * 26 5 4 48 48 H 1.09002 * 109.50693 * 61.85853 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0552 -0.7482 -1.2452 5 6 3.2691 -1.5243 -0.6931 6 6 2.8171 -1.8812 0.7359 7 7 2.0302 -0.7157 1.1837 8 16 1.7557 -0.2848 2.7589 9 8 0.5323 0.4368 2.7167 10 8 1.8620 -1.5048 3.4795 11 6 3.1330 0.8209 3.1723 12 6 2.9907 1.2933 4.6205 13 6 4.1521 2.2265 4.9691 14 6 4.0122 2.6912 6.3958 15 1 3.1782 2.3551 6.9940 16 6 4.9486 3.5465 6.9370 17 7 5.9638 3.9563 6.2084 18 14 4.7748 4.1232 8.7053 19 1 4.7948 2.9484 9.6134 20 1 5.9021 5.0288 9.0435 21 1 3.4901 4.8504 8.8649 22 6 3.5181 -2.7836 -1.5104 23 6 4.7558 -3.5040 -0.9640 24 8 5.8682 -2.6066 -0.9761 25 6 5.6992 -1.4507 -0.1527 26 6 4.5048 -0.6365 -0.6620 27 1 -0.3633 -1.0276 0.0180 28 1 -0.3632 0.5293 0.8809 29 1 -0.3634 0.4982 -0.8988 30 1 2.3661 -0.0434 -2.0164 31 1 1.3022 -1.4345 -1.6327 32 1 2.1961 -2.7769 0.7249 33 1 3.6824 -2.0260 1.3826 34 1 4.0757 0.2866 3.0549 35 1 3.1190 1.6835 2.5061 36 1 2.0480 1.8279 4.7374 37 1 3.0045 0.4310 5.2870 38 1 5.0950 1.6924 4.8521 39 1 4.1379 3.0888 4.3025 40 1 6.6223 4.5583 6.5892 41 1 2.6522 -3.4418 -1.4379 42 1 3.6848 -2.5137 -2.5532 43 1 4.9790 -4.3686 -1.5890 44 1 4.5642 -3.8324 0.0576 45 1 6.6007 -0.8394 -0.1944 46 1 5.5165 -1.7599 0.8764 47 1 4.7154 -0.2707 -1.6669 48 1 4.3291 0.2087 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592104308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:12 Heat of formation + Delta-G solvation = -160.336260 kcal Electronic energy + Delta-G solvation = -28123.718924 eV Core-core repulsion = 24303.919739 eV Total energy + Delta-G solvation = -3819.799184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47205 -38.69895 -38.24499 -37.09641 -36.50583 -34.42557 -34.18770 -32.21775 -32.02418 -29.68915 -28.73240 -26.64916 -25.60247 -24.60557 -24.02936 -22.54507 -22.00202 -20.05406 -19.60518 -18.65747 -18.57325 -17.51170 -17.17912 -16.95027 -16.88673 -16.54184 -16.35057 -15.79891 -15.70724 -15.28011 -14.73596 -14.59679 -14.55029 -14.40448 -14.13593 -13.65012 -13.57222 -13.49154 -13.35464 -13.21286 -13.03664 -12.94944 -12.92138 -12.75612 -12.67248 -12.59664 -12.28474 -12.21000 -12.10928 -11.96094 -11.79598 -11.70010 -11.41477 -11.31762 -11.12629 -11.00702 -10.59135 -10.30503 -9.95929 -8.24463 -6.35872 -0.83846 1.38959 1.41492 1.49483 1.63513 2.38341 2.75757 2.99073 3.01636 3.08992 3.34823 3.56572 3.69225 3.72578 3.85886 4.07923 4.11871 4.17020 4.21688 4.26042 4.33835 4.39248 4.42470 4.56985 4.60256 4.68345 4.74270 4.77971 4.83096 4.87190 4.89160 4.92184 4.98048 5.02144 5.07652 5.13193 5.21264 5.23673 5.36409 5.41798 5.42837 5.51163 5.53359 5.59265 5.76452 6.17067 6.31606 6.79103 7.33541 8.86768 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003246 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.519115 B = 8623.485602 C = 9728.236344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.140 3.860 3 H 0.083 0.917 4 C -0.102 4.102 5 C -0.066 4.066 6 C 0.120 3.880 7 N -1.006 6.006 8 S 2.635 3.365 9 O -0.975 6.975 10 O -0.988 6.988 11 C -0.610 4.610 12 C -0.105 4.105 13 C 0.033 3.967 14 C -0.556 4.556 15 H 0.060 0.940 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.131 4.131 23 C 0.049 3.951 24 O -0.401 6.401 25 C 0.051 3.949 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.050 0.950 45 H 0.098 0.902 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 -13.134 -21.473 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.035 3.965 3 H 0.101 0.899 4 C -0.140 4.140 5 C -0.068 4.068 6 C -0.005 4.005 7 N -0.845 5.845 8 S 2.732 3.268 9 O -0.965 6.965 10 O -0.979 6.979 11 C -0.741 4.741 12 C -0.144 4.144 13 C -0.005 4.005 14 C -0.594 4.594 15 H 0.078 0.922 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.169 4.169 23 C -0.027 4.027 24 O -0.320 6.320 25 C -0.026 4.026 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.327 -13.344 -20.955 25.636 hybrid contribution 0.565 0.928 1.267 1.669 sum -5.761 -12.416 -19.687 23.978 Atomic orbital electron populations 1.22517 0.95008 1.02750 1.03938 1.21603 0.94201 0.96245 0.84423 0.89920 1.22703 0.96366 0.99374 0.95599 1.21110 0.95447 0.96567 0.93687 1.22243 0.94440 0.87925 0.95850 1.58580 1.66759 1.37777 1.21335 1.04148 0.75995 0.74532 0.72088 1.93504 1.41841 1.75598 1.85595 1.93518 1.87899 1.44313 1.72140 1.30569 1.20412 1.16842 1.06238 1.21303 1.01294 1.00324 0.91486 1.18937 0.92705 0.93544 0.95305 1.21707 1.09976 1.28686 0.98995 0.92216 1.25926 0.94744 0.96132 1.02591 1.70059 1.13650 1.34546 1.38577 0.85541 0.78031 0.78461 0.79309 1.19251 1.20513 1.19192 1.21995 0.99015 0.95649 1.00280 1.22847 0.86180 0.92551 1.01155 1.87902 1.41272 1.34214 1.68600 1.22757 0.99314 0.87033 0.93469 1.22033 0.93834 0.98428 1.03480 0.92454 0.91909 0.89459 0.88141 0.88905 0.90497 0.91122 0.84212 0.83797 0.91549 0.91824 0.97957 0.97831 0.92575 0.88964 0.89570 0.87416 0.93213 0.88413 0.93464 0.89549 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 8.98 71.98 0.65 -2.78 16 2 C 0.14 2.39 3.38 45.38 0.15 2.54 16 3 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.10 -1.12 5.43 31.53 0.17 -0.95 16 5 C -0.07 -0.87 0.54 -51.92 -0.03 -0.89 16 6 C 0.12 2.17 5.04 86.53 0.44 2.60 16 7 N -1.01 -21.70 3.30 -485.03 -1.60 -23.31 16 8 S 2.63 78.33 5.64 -56.49 -0.32 78.01 16 9 O -0.97 -33.32 15.01 -127.65 -1.92 -35.24 16 10 O -0.99 -35.26 17.60 -127.65 -2.25 -37.51 16 11 C -0.61 -18.81 6.18 71.98 0.44 -18.37 16 12 C -0.10 -4.33 5.16 30.60 0.16 -4.18 16 13 C 0.03 1.73 4.97 29.85 0.15 1.88 16 14 C -0.56 -31.82 9.11 25.60 0.23 -31.58 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 18 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 C -0.13 -1.34 4.89 30.42 0.15 -1.20 16 23 C 0.05 0.65 6.68 72.08 0.48 1.13 16 24 O -0.40 -7.50 10.74 -148.98 -1.60 -9.10 16 25 C 0.05 0.88 6.66 72.07 0.48 1.36 16 26 C -0.14 -2.02 4.83 30.42 0.15 -1.87 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 1.58 5.68 -2.39 -0.01 1.56 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 0.80 8.01 -2.39 -0.02 0.78 16 31 H 0.09 0.83 7.71 -2.39 -0.02 0.81 16 32 H 0.08 1.31 7.91 -2.39 -0.02 1.29 16 33 H 0.07 1.33 6.40 -2.39 -0.02 1.32 16 34 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 37 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.09 0.71 8.01 -2.38 -0.02 0.69 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.68 7.67 -2.39 -0.02 0.66 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 0.85 6.65 -2.39 -0.02 0.84 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.08 1.16 7.91 -2.39 -0.02 1.14 16 Total: -1.00 -73.83 381.59 -0.37 -74.21 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.92 Total: 13.67 kcal Atomic # 6 Polarization: -55.66 SS G_CDS: 4.08 Total: -51.58 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.32 Total: -78.72 kcal Atomic # 8 Polarization: -76.08 SS G_CDS: -5.76 Total: -81.85 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 78.33 SS G_CDS: -0.32 Total: 78.01 kcal Total: -73.83 -0.37 -74.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592104308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.128 kcal (2) G-P(sol) polarization free energy of solvation -73.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds