Wall clock time and date at job start Tue Mar 31 2020 17:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.51288 * 2 1 4 4 C 1.53236 * 109.49335 * 120.06649 * 2 1 3 5 5 N 1.47117 * 108.71133 * 174.03485 * 4 2 1 6 6 S 1.65602 * 121.04275 * 127.85807 * 5 4 2 7 7 O 1.42095 * 104.27693 * 206.07105 * 6 5 4 8 8 O 1.42106 * 104.27480 * 333.92678 * 6 5 4 9 9 C 1.81393 * 104.45130 * 89.99524 * 6 5 4 10 10 C 1.53002 * 109.47279 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47013 * 300.00190 * 10 9 6 12 12 C 1.52998 * 109.47047 * 60.00453 * 10 9 6 13 13 C 1.50703 * 109.46871 * 180.02562 * 10 9 6 14 14 H 1.08001 * 120.00306 * 357.69039 * 13 10 9 15 15 C 1.37884 * 119.99781 * 177.69975 * 13 10 9 16 16 N 1.31513 * 119.99699 * 6.57874 * 15 13 10 17 17 Si 1.86800 * 120.00007 * 186.57884 * 15 13 10 18 18 H 1.48501 * 109.46922 * 84.98975 * 17 15 13 19 19 H 1.48497 * 109.46915 * 204.98968 * 17 15 13 20 20 H 1.48506 * 109.47046 * 324.99353 * 17 15 13 21 21 C 1.47322 * 117.91720 * 307.83632 * 5 4 2 22 22 C 1.52978 * 108.05199 * 48.50169 * 21 5 4 23 23 C 1.53346 * 113.47180 * 180.25416 * 22 21 5 24 24 C 1.53861 * 87.06193 * 220.24059 * 23 22 21 25 25 C 1.53371 * 113.42317 * 82.42074 * 22 21 5 26 26 O 1.42584 * 112.78155 * 311.39317 * 22 21 5 27 27 H 1.09007 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47052 * 300.06137 * 1 2 3 29 29 H 1.09001 * 109.47308 * 60.06530 * 1 2 3 30 30 H 1.08998 * 109.58965 * 293.80084 * 4 2 1 31 31 H 1.08997 * 109.59854 * 54.10890 * 4 2 1 32 32 H 1.08999 * 109.47615 * 300.00300 * 9 6 5 33 33 H 1.09005 * 109.46787 * 59.99782 * 9 6 5 34 34 H 1.09004 * 109.47018 * 66.67326 * 11 10 9 35 35 H 1.09003 * 109.46386 * 186.66811 * 11 10 9 36 36 H 1.08996 * 109.47286 * 306.66474 * 11 10 9 37 37 H 1.09005 * 109.47196 * 59.99830 * 12 10 9 38 38 H 1.09002 * 109.47215 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.46943 * 300.00093 * 12 10 9 40 40 H 0.97002 * 119.99704 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.74323 * 288.86873 * 21 5 4 42 42 H 1.08996 * 109.74914 * 168.14411 * 21 5 4 43 43 H 1.08996 * 113.63511 * 334.80058 * 23 22 21 44 44 H 1.08997 * 113.63175 * 105.68172 * 23 22 21 45 45 H 1.09004 * 113.60387 * 139.73809 * 24 23 22 46 46 H 1.09001 * 113.60348 * 270.60891 * 24 23 22 47 47 H 1.09003 * 113.63579 * 254.28407 * 25 22 21 48 48 H 1.08997 * 113.63443 * 25.15840 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7237 1.2502 5 7 3.5052 -0.8402 1.1624 6 16 4.4781 -0.3350 2.4037 7 8 5.7122 -0.0180 1.7749 8 8 3.7137 0.6651 3.0632 9 6 4.6595 -1.7978 3.4609 10 6 5.5489 -1.4551 4.6577 11 6 6.9259 -1.0120 4.1594 12 6 4.9082 -0.3216 5.4611 13 6 5.7000 -2.6706 5.5356 14 1 5.1807 -3.5843 5.2869 15 6 6.5013 -2.6161 6.6564 16 7 7.0296 -1.4719 7.0320 17 14 6.8362 -4.1676 7.6413 18 1 7.9765 -4.9016 7.0361 19 1 7.1698 -3.8026 9.0416 20 1 5.6288 -5.0321 7.6292 21 6 4.0787 -1.4209 -0.0641 22 6 3.4290 -0.7300 -1.2644 23 6 3.9356 -1.2486 -2.6156 24 6 3.9161 0.2134 -3.0946 25 6 4.0739 0.6166 -1.6153 26 8 2.0075 -0.6758 -1.1674 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5148 0.8895 29 1 -0.3634 0.5128 -0.8906 30 1 1.7726 -0.1525 2.1387 31 1 1.5959 -1.7170 1.3055 32 1 3.6784 -2.1138 3.8155 33 1 5.1163 -2.6053 2.8885 34 1 6.8317 -0.0676 3.6232 35 1 7.5953 -0.8818 5.0097 36 1 7.3317 -1.7708 3.4904 37 1 3.9271 -0.6373 5.8161 38 1 5.5416 -0.0777 6.3141 39 1 4.7991 0.5575 4.8259 40 1 7.5936 -1.4336 7.8203 41 1 3.8701 -2.4903 -0.0976 42 1 5.1557 -1.2543 -0.0818 43 1 4.9354 -1.6804 -2.5710 44 1 3.2210 -1.8877 -3.1341 45 1 4.7715 0.4809 -3.7150 46 1 2.9644 0.5172 -3.5306 47 1 3.4698 1.4780 -1.3302 48 1 5.1115 0.7015 -1.2925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592108317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:04 Heat of formation + Delta-G solvation = -91.859151 kcal Electronic energy + Delta-G solvation = -28939.606718 eV Core-core repulsion = 25122.776924 eV Total energy + Delta-G solvation = -3816.829794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54743 -37.00175 -36.54728 -36.30340 -35.39717 -34.78286 -31.90345 -31.69875 -28.10883 -26.77219 -25.97320 -25.76017 -25.53529 -25.24879 -23.03581 -21.41819 -19.48812 -19.32775 -18.47096 -17.49551 -16.72972 -16.07345 -16.02201 -15.80131 -15.22706 -14.97641 -14.79686 -14.69552 -14.40089 -13.96244 -13.41580 -13.12191 -13.05068 -12.61160 -12.54997 -12.46886 -12.44236 -12.29880 -11.99125 -11.93819 -11.58420 -11.35612 -11.21452 -11.15656 -11.05701 -10.98564 -10.93905 -10.82607 -10.73614 -10.41688 -10.34401 -10.21834 -10.12437 -9.98175 -9.69852 -9.55484 -8.86299 -8.55299 -8.40593 -6.06791 -4.18387 0.75756 2.98106 3.24398 3.31431 3.33038 3.36729 4.28996 4.32971 4.36935 4.42624 4.54859 4.65102 4.72050 4.72919 4.83755 5.03698 5.12738 5.18067 5.24230 5.33113 5.51943 5.53341 5.57174 5.59722 5.63836 5.64720 5.67849 5.76828 5.77292 5.86471 5.89986 6.01546 6.16421 6.20756 6.34181 6.55030 6.65190 6.74781 6.86887 7.00024 7.15047 7.27150 7.44806 7.64767 7.93960 8.06437 8.30357 8.79917 9.46864 10.94366 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.003545 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.193710 B = 7897.149826 C = 8175.412217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.065 0.935 4 C 0.089 3.911 5 N -1.011 6.011 6 S 2.591 3.409 7 O -0.960 6.960 8 O -0.961 6.961 9 C -0.581 4.581 10 C 0.081 3.919 11 C -0.160 4.160 12 C -0.163 4.163 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.103 3.897 22 C 0.085 3.915 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.165 4.165 26 O -0.351 6.351 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.026 0.974 35 H 0.094 0.906 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.026 0.974 40 H 0.263 0.737 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 1.229 -16.800 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.083 0.917 4 C -0.037 4.037 5 N -0.846 5.846 6 S 2.691 3.309 7 O -0.950 6.950 8 O -0.951 6.951 9 C -0.715 4.715 10 C 0.079 3.921 11 C -0.218 4.218 12 C -0.221 4.221 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.023 4.023 22 C 0.044 3.956 23 C -0.159 4.159 24 C -0.171 4.171 25 C -0.203 4.203 26 O -0.270 6.270 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.044 0.956 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.995 2.126 -16.711 19.097 hybrid contribution 0.165 -1.489 0.955 1.777 sum -8.830 0.637 -15.756 18.073 Atomic orbital electron populations 1.21742 0.92286 1.03197 1.02872 1.22408 0.95061 0.95793 0.85004 0.91703 1.22081 0.79925 1.01805 0.99899 1.58149 1.16022 1.79659 1.30813 1.05777 0.73300 0.77931 0.73858 1.93524 1.43610 1.83402 1.74504 1.93525 1.70940 1.55765 1.74887 1.30583 1.09857 1.17767 1.13250 1.17949 0.89731 0.96238 0.88201 1.22204 1.00528 0.97608 1.01432 1.22307 1.00557 0.96101 1.03150 1.20929 1.28695 0.96321 1.08295 0.92301 1.24940 0.95674 0.96150 0.96936 1.69810 1.33003 1.23897 1.25307 0.86557 0.78721 0.83255 0.79155 1.20507 1.21152 1.19990 1.22008 0.99289 0.97705 0.83273 1.22471 0.81963 0.96568 0.94635 1.22922 1.01629 0.97529 0.93864 1.22832 1.02149 0.95899 0.96209 1.23575 1.02268 0.97722 0.96743 1.87858 1.18725 1.77749 1.42696 0.91533 0.90518 0.91598 0.87837 0.90756 0.86468 0.86448 0.95552 0.88726 0.94597 0.94519 0.88364 0.95549 0.92681 0.90889 0.87629 0.88412 0.90309 0.91177 0.89961 0.91135 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.57 37.16 0.36 -0.91 16 2 C 0.08 0.89 3.29 -26.61 -0.09 0.80 16 3 H 0.06 0.80 7.11 -51.93 -0.37 0.44 16 4 C 0.09 1.13 5.90 -3.58 -0.02 1.11 16 5 N -1.01 -14.87 3.28 -113.17 -0.37 -15.24 16 6 S 2.59 48.46 4.50 -107.50 -0.48 47.97 16 7 O -0.96 -19.74 14.38 -57.54 -0.83 -20.57 16 8 O -0.96 -19.99 14.25 -57.54 -0.82 -20.81 16 9 C -0.58 -11.44 5.11 37.16 0.19 -11.25 16 10 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 11 C -0.16 -3.92 7.58 37.16 0.28 -3.64 16 12 C -0.16 -4.03 7.80 37.16 0.29 -3.74 16 13 C -0.50 -13.19 8.01 -34.44 -0.28 -13.47 16 14 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 15 C 0.07 1.72 5.09 -17.82 -0.09 1.63 16 16 N -0.88 -23.98 9.39 55.43 0.52 -23.46 16 17 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.10 1.33 5.83 -3.60 -0.02 1.30 16 22 C 0.09 1.01 1.12 -90.26 -0.10 0.91 16 23 C -0.12 -1.14 7.46 -26.10 -0.19 -1.33 16 24 C -0.13 -1.25 8.04 -25.69 -0.21 -1.45 16 25 C -0.17 -1.93 7.24 -25.95 -0.19 -2.12 16 26 O -0.35 -4.34 10.08 -35.23 -0.36 -4.70 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 1.34 6.89 -51.93 -0.36 0.98 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 33 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 34 H 0.03 0.61 5.96 -51.93 -0.31 0.30 16 35 H 0.09 2.50 5.99 -51.93 -0.31 2.19 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 39 H 0.03 0.62 5.47 -51.93 -0.28 0.33 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.11 1.38 6.68 -51.93 -0.35 1.03 16 43 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.86 7.18 -51.93 -0.37 0.48 16 48 H 0.10 1.18 7.95 -51.93 -0.41 0.76 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -30.94 370.39 -10.04 -40.98 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.11 Total: 5.01 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -0.15 Total: -30.27 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.15 Total: -38.70 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.00 Total: -46.07 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 48.46 SS G_CDS: -0.48 Total: 47.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.94 -10.04 -40.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592108317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.880 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds