Wall clock time and date at job start Tue Mar 31 2020 17:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.51288 * 2 1 4 4 C 1.53236 * 109.49335 * 120.06649 * 2 1 3 5 5 N 1.47117 * 108.71133 * 174.03485 * 4 2 1 6 6 S 1.65602 * 121.04275 * 127.85807 * 5 4 2 7 7 O 1.42095 * 104.27693 * 206.07105 * 6 5 4 8 8 O 1.42106 * 104.27480 * 333.92678 * 6 5 4 9 9 C 1.81393 * 104.45130 * 89.99524 * 6 5 4 10 10 C 1.53002 * 109.47279 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47013 * 300.00190 * 10 9 6 12 12 C 1.52998 * 109.47047 * 60.00453 * 10 9 6 13 13 C 1.50703 * 109.46871 * 180.02562 * 10 9 6 14 14 H 1.08001 * 120.00306 * 357.69039 * 13 10 9 15 15 C 1.37884 * 119.99781 * 177.69975 * 13 10 9 16 16 N 1.31513 * 119.99699 * 6.57874 * 15 13 10 17 17 Si 1.86800 * 120.00007 * 186.57884 * 15 13 10 18 18 H 1.48501 * 109.46922 * 84.98975 * 17 15 13 19 19 H 1.48497 * 109.46915 * 204.98968 * 17 15 13 20 20 H 1.48506 * 109.47046 * 324.99353 * 17 15 13 21 21 C 1.47322 * 117.91720 * 307.83632 * 5 4 2 22 22 C 1.52978 * 108.05199 * 48.50169 * 21 5 4 23 23 C 1.53346 * 113.47180 * 180.25416 * 22 21 5 24 24 C 1.53861 * 87.06193 * 220.24059 * 23 22 21 25 25 C 1.53371 * 113.42317 * 82.42074 * 22 21 5 26 26 O 1.42584 * 112.78155 * 311.39317 * 22 21 5 27 27 H 1.09007 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47052 * 300.06137 * 1 2 3 29 29 H 1.09001 * 109.47308 * 60.06530 * 1 2 3 30 30 H 1.08998 * 109.58965 * 293.80084 * 4 2 1 31 31 H 1.08997 * 109.59854 * 54.10890 * 4 2 1 32 32 H 1.08999 * 109.47615 * 300.00300 * 9 6 5 33 33 H 1.09005 * 109.46787 * 59.99782 * 9 6 5 34 34 H 1.09004 * 109.47018 * 66.67326 * 11 10 9 35 35 H 1.09003 * 109.46386 * 186.66811 * 11 10 9 36 36 H 1.08996 * 109.47286 * 306.66474 * 11 10 9 37 37 H 1.09005 * 109.47196 * 59.99830 * 12 10 9 38 38 H 1.09002 * 109.47215 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.46943 * 300.00093 * 12 10 9 40 40 H 0.97002 * 119.99704 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.74323 * 288.86873 * 21 5 4 42 42 H 1.08996 * 109.74914 * 168.14411 * 21 5 4 43 43 H 1.08996 * 113.63511 * 334.80058 * 23 22 21 44 44 H 1.08997 * 113.63175 * 105.68172 * 23 22 21 45 45 H 1.09004 * 113.60387 * 139.73809 * 24 23 22 46 46 H 1.09001 * 113.60348 * 270.60891 * 24 23 22 47 47 H 1.09003 * 113.63579 * 254.28407 * 25 22 21 48 48 H 1.08997 * 113.63443 * 25.15840 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7237 1.2502 5 7 3.5052 -0.8402 1.1624 6 16 4.4781 -0.3350 2.4037 7 8 5.7122 -0.0180 1.7749 8 8 3.7137 0.6651 3.0632 9 6 4.6595 -1.7978 3.4609 10 6 5.5489 -1.4551 4.6577 11 6 6.9259 -1.0120 4.1594 12 6 4.9082 -0.3216 5.4611 13 6 5.7000 -2.6706 5.5356 14 1 5.1807 -3.5843 5.2869 15 6 6.5013 -2.6161 6.6564 16 7 7.0296 -1.4719 7.0320 17 14 6.8362 -4.1676 7.6413 18 1 7.9765 -4.9016 7.0361 19 1 7.1698 -3.8026 9.0416 20 1 5.6288 -5.0321 7.6292 21 6 4.0787 -1.4209 -0.0641 22 6 3.4290 -0.7300 -1.2644 23 6 3.9356 -1.2486 -2.6156 24 6 3.9161 0.2134 -3.0946 25 6 4.0739 0.6166 -1.6153 26 8 2.0075 -0.6758 -1.1674 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5148 0.8895 29 1 -0.3634 0.5128 -0.8906 30 1 1.7726 -0.1525 2.1387 31 1 1.5959 -1.7170 1.3055 32 1 3.6784 -2.1138 3.8155 33 1 5.1163 -2.6053 2.8885 34 1 6.8317 -0.0676 3.6232 35 1 7.5953 -0.8818 5.0097 36 1 7.3317 -1.7708 3.4904 37 1 3.9271 -0.6373 5.8161 38 1 5.5416 -0.0777 6.3141 39 1 4.7991 0.5575 4.8259 40 1 7.5936 -1.4336 7.8203 41 1 3.8701 -2.4903 -0.0976 42 1 5.1557 -1.2543 -0.0818 43 1 4.9354 -1.6804 -2.5710 44 1 3.2210 -1.8877 -3.1341 45 1 4.7715 0.4809 -3.7150 46 1 2.9644 0.5172 -3.5306 47 1 3.4698 1.4780 -1.3302 48 1 5.1115 0.7015 -1.2925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592108317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:03 Heat of formation + Delta-G solvation = -110.999901 kcal Electronic energy + Delta-G solvation = -28940.436723 eV Core-core repulsion = 25122.776924 eV Total energy + Delta-G solvation = -3817.659799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44802 -38.29935 -38.17220 -37.69405 -36.95980 -35.87251 -33.66345 -32.75353 -29.05814 -28.40008 -27.73587 -27.27617 -26.80181 -26.54282 -23.92284 -22.31116 -21.33300 -20.23567 -19.82698 -18.91019 -17.94493 -17.74993 -17.17014 -17.05177 -16.76977 -16.34596 -16.07842 -15.82993 -15.41296 -15.11478 -14.75059 -14.69965 -14.46553 -14.26737 -13.89470 -13.65473 -13.44886 -13.31136 -13.14163 -13.13263 -12.97768 -12.89335 -12.81271 -12.72474 -12.51177 -12.40341 -12.21876 -12.17242 -12.01301 -11.95561 -11.78199 -11.65750 -11.60869 -11.42075 -11.17267 -10.91604 -10.66485 -10.41471 -9.68427 -8.05723 -6.24103 -0.72438 1.43590 1.45238 1.53304 1.66857 2.42875 2.51379 2.83973 3.11632 3.17207 3.47244 3.60932 3.66518 3.74819 3.89781 3.92807 4.02032 4.07955 4.18854 4.27226 4.33564 4.45259 4.54931 4.63739 4.71069 4.78695 4.79409 4.81468 4.82253 4.84941 4.89559 4.94398 5.01557 5.03295 5.04710 5.09466 5.25125 5.33003 5.34557 5.39661 5.42828 5.50258 5.62046 5.93512 6.08027 6.24692 6.31675 6.80073 7.44084 8.94078 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.003545 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.193710 B = 7897.149826 C = 8175.412217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.051 0.949 4 C 0.080 3.920 5 N -1.004 6.004 6 S 2.608 3.392 7 O -0.983 6.983 8 O -0.986 6.986 9 C -0.585 4.585 10 C 0.068 3.932 11 C -0.155 4.155 12 C -0.159 4.159 13 C -0.519 4.519 14 H 0.062 0.938 15 C 0.019 3.981 16 N -0.906 5.906 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.093 3.907 22 C 0.077 3.923 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.177 4.177 26 O -0.354 6.354 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 -0.373 -18.426 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.069 0.931 4 C -0.045 4.045 5 N -0.842 5.842 6 S 2.708 3.292 7 O -0.973 6.973 8 O -0.976 6.976 9 C -0.718 4.718 10 C 0.066 3.934 11 C -0.213 4.213 12 C -0.217 4.217 13 C -0.558 4.558 14 H 0.081 0.919 15 C -0.181 4.181 16 N -0.545 5.545 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.031 4.031 22 C 0.035 3.965 23 C -0.150 4.150 24 C -0.161 4.161 25 C -0.215 4.215 26 O -0.273 6.273 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.076 0.924 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.202 0.518 -18.332 20.986 hybrid contribution 0.510 -0.945 1.415 1.777 sum -9.692 -0.427 -16.917 19.501 Atomic orbital electron populations 1.21751 0.89988 1.04072 1.03788 1.22498 0.96806 0.94818 0.84387 0.93123 1.22369 0.78525 1.03250 1.00390 1.57809 1.16647 1.79653 1.30119 1.04979 0.72963 0.77324 0.73947 1.93487 1.45217 1.83711 1.74867 1.93484 1.71384 1.56782 1.75983 1.30524 1.09910 1.19167 1.12172 1.17947 0.90279 0.95411 0.89768 1.22129 1.00638 0.98018 1.00546 1.22230 1.00157 0.96768 1.02515 1.21265 1.28719 0.97080 1.08750 0.91947 1.25676 0.95659 0.98664 0.98059 1.69949 1.33412 1.25524 1.25611 0.85631 0.78694 0.80067 0.77614 1.20138 1.21260 1.19240 1.22301 0.99198 0.99020 0.82628 1.22661 0.81797 0.96707 0.95342 1.22964 1.02518 0.97616 0.91890 1.22800 1.02886 0.95752 0.94692 1.23629 1.01438 0.97495 0.98925 1.87866 1.18921 1.77669 1.42815 0.90638 0.89420 0.90929 0.88303 0.88523 0.84864 0.84691 0.95364 0.91097 0.93838 0.94227 0.90760 0.95173 0.92835 0.88734 0.88115 0.86948 0.89328 0.89734 0.89743 0.92358 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.57 71.98 0.69 -1.45 16 2 C 0.07 1.62 3.29 30.67 0.10 1.72 16 3 H 0.05 1.24 7.11 -2.39 -0.02 1.22 16 4 C 0.08 1.90 5.90 86.34 0.51 2.41 16 5 N -1.00 -28.18 3.28 -511.97 -1.68 -29.85 16 6 S 2.61 96.22 4.50 -56.49 -0.25 95.97 16 7 O -0.98 -40.35 14.38 -127.65 -1.84 -42.18 16 8 O -0.99 -41.05 14.25 -127.65 -1.82 -42.87 16 9 C -0.59 -22.40 5.11 71.98 0.37 -22.03 16 10 C 0.07 3.29 0.52 -52.93 -0.03 3.27 16 11 C -0.16 -7.70 7.58 71.98 0.55 -7.15 16 12 C -0.16 -7.95 7.80 71.98 0.56 -7.39 16 13 C -0.52 -27.01 8.01 25.60 0.20 -26.80 16 14 H 0.06 3.12 7.75 -2.91 -0.02 3.10 16 15 C 0.02 1.01 5.09 84.66 0.43 1.44 16 16 N -0.91 -50.07 9.39 21.45 0.20 -49.87 16 17 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 C 0.09 2.23 5.83 86.22 0.50 2.74 16 22 C 0.08 1.67 1.12 -10.56 -0.01 1.66 16 23 C -0.11 -1.79 7.46 31.00 0.23 -1.56 16 24 C -0.12 -2.06 8.04 31.27 0.25 -1.81 16 25 C -0.18 -4.00 7.24 31.10 0.23 -3.77 16 26 O -0.35 -8.00 10.08 -148.98 -1.50 -9.50 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 2.45 6.89 -2.39 -0.02 2.43 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 33 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 34 H 0.03 1.34 5.96 -2.39 -0.01 1.32 16 35 H 0.07 3.83 5.99 -2.39 -0.01 3.82 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.07 4.06 6.01 -2.39 -0.01 4.04 16 39 H 0.03 1.44 5.47 -2.38 -0.01 1.42 16 40 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.10 2.51 6.68 -2.39 -0.02 2.49 16 43 H 0.11 1.47 8.09 -2.39 -0.02 1.45 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 1.42 7.18 -2.39 -0.02 1.40 16 48 H 0.09 2.09 7.95 -2.39 -0.02 2.07 16 Total: -1.00 -65.97 370.39 0.65 -65.31 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.93 Total: 27.86 kcal Atomic # 6 Polarization: -63.32 SS G_CDS: 4.58 Total: -58.74 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -1.48 Total: -79.72 kcal Atomic # 8 Polarization: -89.40 SS G_CDS: -5.16 Total: -94.55 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 96.22 SS G_CDS: -0.25 Total: 95.97 kcal Total: -65.97 0.65 -65.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592108317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.687 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds