Wall clock time and date at job start Tue Mar 31 2020 17:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51514 * 2 1 4 4 C 1.53279 * 109.51145 * 239.89386 * 2 1 3 5 5 N 1.47164 * 108.53282 * 187.26814 * 4 2 1 6 6 S 1.65593 * 121.05258 * 231.01705 * 5 4 2 7 7 O 1.42097 * 104.27806 * 26.09951 * 6 5 4 8 8 O 1.42100 * 104.27669 * 153.95392 * 6 5 4 9 9 C 1.81395 * 104.45434 * 270.02558 * 6 5 4 10 10 C 1.53006 * 109.47508 * 180.02562 * 9 6 5 11 11 C 1.52999 * 109.47061 * 180.02562 * 10 9 6 12 12 C 1.50694 * 109.46683 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00349 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99975 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99878 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00199 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47100 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47339 * 119.99577 * 16 14 12 19 19 H 1.48504 * 109.46744 * 239.99911 * 16 14 12 20 20 C 1.47284 * 117.89453 * 51.04413 * 5 4 2 21 21 C 1.52647 * 108.38570 * 310.42757 * 20 5 4 22 22 C 1.54706 * 109.90402 * 288.72360 * 21 20 5 23 23 C 1.54985 * 102.55241 * 204.10951 * 22 21 20 24 24 C 1.54317 * 104.37197 * 37.37862 * 23 22 21 25 25 C 1.53703 * 110.33166 * 173.58568 * 21 20 5 26 26 O 1.42222 * 110.83240 * 50.73492 * 21 20 5 27 27 H 1.08994 * 109.47342 * 180.10204 * 1 2 3 28 28 H 1.08998 * 109.46759 * 300.10167 * 1 2 3 29 29 H 1.09002 * 109.46819 * 60.10020 * 1 2 3 30 30 H 1.08996 * 109.62117 * 67.55681 * 4 2 1 31 31 H 1.09000 * 109.63030 * 306.98483 * 4 2 1 32 32 H 1.08999 * 109.47106 * 300.00269 * 9 6 5 33 33 H 1.09002 * 109.46889 * 59.99761 * 9 6 5 34 34 H 1.09004 * 109.46673 * 300.00105 * 10 9 6 35 35 H 1.08997 * 109.46593 * 59.99843 * 10 9 6 36 36 H 1.08996 * 109.46873 * 299.99815 * 11 10 9 37 37 H 1.09002 * 109.47133 * 59.99834 * 11 10 9 38 38 H 0.97006 * 120.00156 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.68042 * 190.70074 * 20 5 4 40 40 H 1.09000 * 109.71078 * 70.16389 * 20 5 4 41 41 H 1.08997 * 110.90248 * 85.82909 * 22 21 20 42 42 H 1.08998 * 110.77387 * 322.33406 * 22 21 20 43 43 H 1.09002 * 110.47661 * 278.61913 * 23 22 21 44 44 H 1.09004 * 110.47268 * 156.13534 * 23 22 21 45 45 H 1.09000 * 110.03118 * 95.69986 * 24 23 22 46 46 H 1.08992 * 110.03421 * 217.08995 * 24 23 22 47 47 H 1.09000 * 110.05572 * 22.08803 * 25 21 20 48 48 H 1.09004 * 110.05421 * 260.59418 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7247 -1.2499 5 7 3.5028 -0.8667 -1.1428 6 16 4.4996 -0.3956 -2.3783 7 8 3.7621 0.6100 -3.0596 8 8 5.7319 -0.0935 -1.7386 9 6 4.6664 -1.8749 -3.4147 10 6 5.5763 -1.5641 -4.6049 11 6 5.7164 -2.8117 -5.4793 12 6 6.6121 -2.5053 -6.6518 13 1 7.0391 -1.5194 -6.7620 14 6 6.8865 -3.4835 -7.5839 15 7 6.3670 -4.6842 -7.4494 16 14 7.9974 -3.1040 -9.0369 17 1 8.4502 -1.6919 -8.9582 18 1 9.1773 -4.0050 -9.0066 19 1 7.2472 -3.3130 -10.3013 20 6 4.0501 -1.4416 0.0978 21 6 3.4248 -0.7117 1.2836 22 6 3.9876 0.7266 1.3730 23 6 3.7830 1.0759 2.8691 24 6 4.0771 -0.2431 3.6141 25 6 3.8421 -1.3807 2.6030 26 8 2.0078 -0.6774 1.1663 27 1 -0.3634 -1.0276 0.0018 28 1 -0.3633 0.5154 0.8891 29 1 -0.3633 0.5123 -0.8909 30 1 1.7947 -0.1425 -2.1375 31 1 1.5821 -1.7108 -1.3156 32 1 5.1011 -2.6833 -2.8268 33 1 3.6838 -2.1772 -3.7773 34 1 5.1419 -0.7555 -5.1929 35 1 6.5587 -1.2621 -4.2419 36 1 6.1505 -3.6204 -4.8915 37 1 4.7338 -3.1133 -5.8422 38 1 6.5603 -5.3726 -8.1050 39 1 5.1322 -1.3122 0.1162 40 1 3.8064 -2.5028 0.1500 41 1 3.4209 1.4062 0.7366 42 1 5.0460 0.7444 1.1132 43 1 2.7564 1.3949 3.0493 44 1 4.4825 1.8526 3.1783 45 1 5.1118 -0.2558 3.9566 46 1 3.4018 -0.3512 4.4627 47 1 4.7610 -1.9492 2.4595 48 1 3.0472 -2.0371 2.9570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592113756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:08 Heat of formation + Delta-G solvation = -135.964957 kcal Electronic energy + Delta-G solvation = -27894.799287 eV Core-core repulsion = 24076.056921 eV Total energy + Delta-G solvation = -3818.742365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56262 -37.12955 -36.68484 -35.83781 -34.97307 -34.69238 -32.49760 -32.21024 -29.23591 -28.94203 -27.83448 -26.46068 -24.43514 -23.63777 -22.32146 -20.66473 -20.47806 -19.69513 -18.82231 -17.72449 -17.11637 -16.68005 -16.37311 -15.98818 -15.51055 -15.29955 -15.24783 -14.55685 -14.44346 -14.32184 -14.15072 -13.74629 -13.17857 -12.76391 -12.68468 -12.61065 -12.45824 -12.30640 -12.10431 -12.01033 -11.86956 -11.81814 -11.63747 -11.59089 -11.50588 -11.39513 -11.27635 -11.00528 -10.95428 -10.86769 -10.67651 -10.49266 -10.42938 -10.20002 -9.98870 -9.47385 -9.19436 -8.78439 -8.43300 -6.07839 -4.11008 0.35196 2.61501 3.27903 3.35453 3.35846 3.40346 3.93484 4.11359 4.28227 4.32518 4.40592 4.46999 4.55364 4.65509 4.88141 4.88835 5.01045 5.08992 5.13798 5.18687 5.20455 5.22110 5.28706 5.35332 5.39415 5.41794 5.46399 5.52059 5.58677 5.67220 5.68854 5.77724 5.82936 5.85189 5.89976 5.96237 6.04138 6.12658 6.20161 6.34437 6.40993 6.83635 7.09351 7.54494 7.63923 7.90114 8.30385 8.95418 9.53888 11.03413 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.002696 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.616067 B =10383.926512 C =10734.313442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.068 0.932 4 C 0.088 3.912 5 N -1.006 6.006 6 S 2.595 3.405 7 O -0.959 6.959 8 O -0.957 6.957 9 C -0.607 4.607 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.097 3.903 21 C 0.108 3.892 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.109 4.109 26 O -0.360 6.360 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 7.625 22.022 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.085 0.915 4 C -0.038 4.038 5 N -0.843 5.843 6 S 2.693 3.307 7 O -0.949 6.949 8 O -0.947 6.947 9 C -0.739 4.739 10 C -0.145 4.145 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.029 4.029 21 C 0.067 3.933 22 C -0.192 4.192 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.147 4.147 26 O -0.279 6.279 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.317 8.250 21.989 25.651 hybrid contribution 0.555 -0.601 -1.229 1.476 sum -9.761 7.649 20.760 24.182 Atomic orbital electron populations 1.21733 0.92285 1.03227 1.02840 1.22451 0.95142 0.95902 0.85009 0.91457 1.22177 0.79547 1.02000 1.00068 1.58004 1.16582 1.79974 1.29714 1.05536 0.73486 0.77437 0.74194 1.93551 1.71767 1.54845 1.74743 1.93551 1.44095 1.83452 1.73640 1.30590 1.10270 1.19871 1.13204 1.21513 0.96502 1.03184 0.93328 1.19064 0.97505 0.90718 0.93477 1.21287 1.29392 0.97735 1.08019 0.92313 1.25025 0.96145 0.95016 0.98212 1.69967 1.44500 1.02870 1.36068 0.86497 0.80437 0.78553 0.82334 1.19586 1.20910 1.20916 1.22079 0.99825 0.97816 0.83190 1.22147 0.81625 0.95066 0.94474 1.23171 1.02319 0.96492 0.97197 1.22313 1.01561 0.97259 0.94538 1.22131 1.01512 0.94275 0.97951 1.22060 1.01816 0.98196 0.92625 1.87832 1.19868 1.77322 1.42861 0.91524 0.91565 0.90634 0.87835 0.90505 0.85436 0.85446 0.91618 0.91593 0.96110 0.96113 0.92926 0.87676 0.90633 0.90978 0.89752 0.91551 0.91670 0.91588 0.91660 0.89995 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.57 37.16 0.36 -0.71 16 2 C 0.07 0.73 3.16 -26.59 -0.08 0.64 16 3 H 0.07 0.70 6.10 -51.93 -0.32 0.38 16 4 C 0.09 0.91 5.94 -3.54 -0.02 0.89 16 5 N -1.01 -11.97 3.15 -113.33 -0.36 -12.32 16 6 S 2.60 38.86 5.47 -107.50 -0.59 38.27 16 7 O -0.96 -16.63 16.62 -57.54 -0.96 -17.59 16 8 O -0.96 -16.41 16.62 -57.54 -0.96 -17.37 16 9 C -0.61 -9.49 6.18 37.16 0.23 -9.26 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 12 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.10 1.02 5.21 -3.79 -0.02 1.00 16 21 C 0.11 1.09 0.82 -89.54 -0.07 1.01 16 22 C -0.15 -1.60 5.70 -24.79 -0.14 -1.75 16 23 C -0.12 -1.02 6.80 -24.99 -0.17 -1.19 16 24 C -0.12 -0.92 6.81 -25.52 -0.17 -1.09 16 25 C -0.11 -0.89 6.13 -25.84 -0.16 -1.05 16 26 O -0.36 -3.83 9.85 -35.23 -0.35 -4.18 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 1.08 6.89 -51.93 -0.36 0.72 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 33 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.11 1.12 6.69 -51.93 -0.35 0.78 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.80 5.94 -51.93 -0.31 0.49 16 42 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.57 7.81 -51.93 -0.41 0.17 16 48 H 0.08 0.63 8.07 -51.93 -0.42 0.22 16 LS Contribution 384.45 15.07 5.79 5.79 Total: -1.00 -33.89 384.45 -11.09 -44.97 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.45 Total: -1.53 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -0.94 Total: -26.76 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.38 Total: -38.15 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.26 Total: -39.13 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 38.86 SS G_CDS: -0.59 Total: 38.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.89 -11.09 -44.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592113756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.991 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds