Wall clock time and date at job start Tue Mar 31 2020 17:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.51619 * 2 1 4 4 C 1.53275 * 109.51408 * 120.10030 * 2 1 3 5 5 N 1.47167 * 108.53680 * 172.78792 * 4 2 1 6 6 S 1.65600 * 121.05368 * 128.94450 * 5 4 2 7 7 O 1.42102 * 104.27691 * 26.08881 * 6 5 4 8 8 O 1.42095 * 104.27690 * 153.95180 * 6 5 4 9 9 C 1.81405 * 104.44676 * 270.01978 * 6 5 4 10 10 C 1.52992 * 109.46843 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.47166 * 179.97438 * 10 9 6 12 12 C 1.50696 * 109.47268 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00206 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99757 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00102 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99670 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47439 * 90.00339 * 16 14 12 18 18 H 1.48507 * 109.46812 * 210.00056 * 16 14 12 19 19 H 1.48502 * 109.47390 * 329.99807 * 16 14 12 20 20 C 1.47277 * 117.89338 * 308.96055 * 5 4 2 21 21 C 1.52654 * 108.38687 * 49.56980 * 20 5 4 22 22 C 1.53726 * 110.27323 * 71.99428 * 21 20 5 23 23 C 1.54001 * 106.51163 * 95.32391 * 22 21 20 24 24 C 1.54306 * 106.57927 * 359.57872 * 23 22 21 25 25 C 1.54418 * 109.96982 * 187.05655 * 21 20 5 26 26 O 1.42219 * 110.82457 * 309.26221 * 21 20 5 27 27 H 1.08998 * 109.47197 * 299.90017 * 1 2 3 28 28 H 1.08997 * 109.46870 * 59.90182 * 1 2 3 29 29 H 1.08997 * 109.46948 * 179.89804 * 1 2 3 30 30 H 1.09002 * 109.63059 * 53.06965 * 4 2 1 31 31 H 1.09002 * 109.78512 * 292.59302 * 4 2 1 32 32 H 1.08996 * 109.46861 * 300.00004 * 9 6 5 33 33 H 1.08994 * 109.47112 * 59.99985 * 9 6 5 34 34 H 1.08996 * 109.47305 * 299.99621 * 10 9 6 35 35 H 1.09003 * 109.47252 * 59.99900 * 10 9 6 36 36 H 1.08993 * 109.47228 * 300.00439 * 11 10 9 37 37 H 1.09003 * 109.46973 * 59.99905 * 11 10 9 38 38 H 0.97002 * 119.99736 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.68904 * 289.84337 * 20 5 4 40 40 H 1.09003 * 109.71486 * 169.31256 * 20 5 4 41 41 H 1.09002 * 110.05844 * 336.04372 * 22 21 20 42 42 H 1.09000 * 110.05579 * 214.60283 * 22 21 20 43 43 H 1.08991 * 110.03646 * 118.86344 * 23 22 21 44 44 H 1.09001 * 110.03427 * 240.30099 * 23 22 21 45 45 H 1.09002 * 110.47883 * 142.19700 * 24 23 22 46 46 H 1.08997 * 110.47646 * 264.81137 * 24 23 22 47 47 H 1.09001 * 110.71722 * 160.44154 * 25 21 20 48 48 H 1.08999 * 110.92725 * 37.15336 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 1.2499 5 7 3.5030 -0.8654 1.1435 6 16 4.4990 -0.3928 2.3793 7 8 3.6884 -0.4967 3.5418 8 8 5.6596 -1.1972 2.2211 9 6 4.8748 1.3448 2.0185 10 6 5.7998 1.9021 3.1022 11 6 6.1174 3.3675 2.7975 12 6 7.0280 3.9167 3.8653 13 1 7.3486 3.2837 4.6796 14 6 7.4527 5.2269 3.8021 15 7 7.0627 5.9975 2.8104 16 14 8.5821 5.9074 5.1254 17 1 9.9966 5.6903 4.7287 18 1 8.3318 7.3619 5.2897 19 1 8.3157 5.2111 6.4097 20 6 4.0514 -1.4395 -0.0969 21 6 3.4259 -0.7097 -1.2829 22 6 3.9917 0.7157 -1.3898 23 6 5.1512 0.6516 -2.4013 24 6 5.2520 -0.8172 -2.8631 25 6 3.8386 -1.3973 -2.6025 26 8 2.0089 -0.6767 -1.1661 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0018 30 1 1.5829 -1.7110 1.3152 31 1 1.7938 -0.1457 2.1396 32 1 5.3675 1.4161 1.0488 33 1 3.9493 1.9202 1.9990 34 1 5.3076 1.8307 4.0720 35 1 6.7253 1.3265 3.1212 36 1 6.6097 3.4386 1.8278 37 1 5.1921 3.9433 2.7782 38 1 7.3618 6.9192 2.7658 39 1 3.8082 -2.5007 -0.1493 40 1 5.1335 -1.3097 -0.1152 41 1 4.3607 1.0453 -0.4185 42 1 3.2207 1.3980 -1.7476 43 1 4.9395 1.2974 -3.2534 44 1 6.0816 0.9573 -1.9227 45 1 5.4949 -0.8675 -3.9245 46 1 5.9979 -1.3516 -2.2747 47 1 3.1556 -1.1275 -3.4080 48 1 3.8816 -2.4796 -2.4807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592113757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:12 Heat of formation + Delta-G solvation = -137.065972 kcal Electronic energy + Delta-G solvation = -28465.036709 eV Core-core repulsion = 24646.246600 eV Total energy + Delta-G solvation = -3818.790109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58472 -37.19762 -36.77401 -35.85561 -35.01063 -34.72305 -32.44546 -32.22909 -29.17238 -28.58122 -27.84395 -26.55448 -24.80776 -23.70233 -22.14852 -20.64487 -20.57665 -19.48901 -18.82041 -17.72931 -17.20456 -16.69696 -16.34638 -15.95781 -15.80728 -15.37904 -15.00897 -14.52556 -14.42398 -14.30485 -14.10451 -13.56296 -13.22259 -13.05351 -12.63893 -12.56247 -12.43598 -12.33982 -12.09805 -12.03039 -11.95084 -11.84755 -11.68842 -11.52345 -11.38195 -11.32818 -11.30306 -11.12986 -10.94815 -10.89869 -10.65028 -10.55470 -10.33625 -10.24543 -9.98921 -9.44093 -9.19968 -8.84234 -8.43466 -6.08419 -4.11607 0.33140 2.59250 3.28558 3.34829 3.35968 3.38846 3.92284 4.10275 4.26981 4.35251 4.39835 4.46656 4.53131 4.67127 4.86971 4.90539 4.98483 5.04571 5.07574 5.14334 5.20325 5.23009 5.27991 5.28766 5.40126 5.45064 5.50661 5.56298 5.58770 5.68681 5.72015 5.79406 5.83381 5.88039 5.96100 5.99567 6.05704 6.12824 6.18387 6.33173 6.39652 6.82204 7.07841 7.53164 7.62718 7.89266 8.29599 8.94451 9.53319 11.02720 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003473 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.649501 B = 8060.953533 C = 8635.185145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.068 0.932 4 C 0.093 3.907 5 N -1.006 6.006 6 S 2.595 3.405 7 O -0.957 6.957 8 O -0.956 6.956 9 C -0.612 4.612 10 C -0.104 4.104 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.106 3.894 21 C 0.103 3.897 22 C -0.156 4.156 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.106 4.106 26 O -0.362 6.362 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 -14.390 -12.343 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.032 4.032 5 N -0.843 5.843 6 S 2.692 3.308 7 O -0.947 6.947 8 O -0.947 6.947 9 C -0.744 4.744 10 C -0.144 4.144 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.019 4.019 21 C 0.061 3.939 22 C -0.194 4.194 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.144 4.144 26 O -0.281 6.281 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.206 -14.891 -11.808 22.062 hybrid contribution 0.678 1.262 0.436 1.497 sum -10.528 -13.630 -11.372 20.638 Atomic orbital electron populations 1.21737 0.92278 1.03188 1.02959 1.22509 0.95346 0.95829 0.85231 0.91445 1.22120 0.79504 1.02436 0.99159 1.58062 1.16298 1.77527 1.32384 1.05609 0.73604 0.78141 0.73411 1.93564 1.68216 1.86828 1.46115 1.93563 1.49600 1.65992 1.85508 1.30706 1.10653 1.22513 1.10487 1.21505 0.96327 1.02231 0.94331 1.19052 0.97007 0.87232 0.97343 1.21245 1.29348 0.96470 1.09457 0.92378 1.25010 0.96378 0.97010 0.95884 1.69956 1.44999 1.07286 1.31134 0.86562 0.81002 0.78146 0.82150 1.20547 1.21146 1.19724 1.21953 0.99266 0.98082 0.82628 1.22277 0.81402 0.95067 0.95121 1.22818 0.99056 0.96895 1.00590 1.22115 0.98508 0.96829 0.98813 1.22423 0.96360 0.95901 1.01730 1.22391 0.96776 0.99866 0.95338 1.87841 1.19925 1.77522 1.42774 0.90601 0.91452 0.91588 0.90294 0.88239 0.85385 0.85432 0.91564 0.91579 0.96136 0.96133 0.92888 0.90371 0.88175 0.91201 0.90396 0.91313 0.91053 0.90912 0.90973 0.90062 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.57 37.16 0.36 -0.73 16 2 C 0.07 0.68 3.16 -26.59 -0.08 0.59 16 3 H 0.07 0.66 7.05 -51.93 -0.37 0.29 16 4 C 0.09 0.99 5.78 -3.54 -0.02 0.97 16 5 N -1.01 -12.28 2.93 -113.33 -0.33 -12.61 16 6 S 2.59 39.72 5.42 -107.50 -0.58 39.13 16 7 O -0.96 -16.97 16.81 -57.54 -0.97 -17.94 16 8 O -0.96 -16.96 16.84 -57.54 -0.97 -17.93 16 9 C -0.61 -9.50 5.45 37.15 0.20 -9.30 16 10 C -0.10 -2.11 5.16 -26.73 -0.14 -2.24 16 11 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 12 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C 0.11 1.17 4.90 -3.80 -0.02 1.15 16 21 C 0.10 1.03 0.90 -89.68 -0.08 0.95 16 22 C -0.16 -1.62 4.87 -25.83 -0.13 -1.74 16 23 C -0.12 -1.17 6.81 -25.53 -0.17 -1.34 16 24 C -0.13 -1.00 6.50 -25.00 -0.16 -1.17 16 25 C -0.11 -0.88 6.07 -24.94 -0.15 -1.03 16 26 O -0.36 -3.88 9.86 -35.23 -0.35 -4.22 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.01 7.21 -51.93 -0.37 0.63 16 32 H 0.13 1.80 6.38 -51.93 -0.33 1.47 16 33 H 0.13 1.76 8.14 -51.93 -0.42 1.33 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 40 H 0.10 1.10 6.81 -51.93 -0.35 0.74 16 41 H 0.07 0.77 4.88 -51.93 -0.25 0.52 16 42 H 0.08 0.81 7.75 -51.93 -0.40 0.40 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.08 0.56 7.97 -51.93 -0.41 0.15 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -33.83 380.62 -11.05 -44.89 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -8.36 Total: -1.17 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -0.95 Total: -26.71 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.40 Total: -38.21 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -2.28 Total: -40.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.58 Total: 39.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.83 -11.05 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592113757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.178 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds