Wall clock time and date at job start Tue Mar 31 2020 17:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.51619 * 2 1 4 4 C 1.53275 * 109.51408 * 120.10030 * 2 1 3 5 5 N 1.47167 * 108.53680 * 172.78792 * 4 2 1 6 6 S 1.65600 * 121.05368 * 128.94450 * 5 4 2 7 7 O 1.42102 * 104.27691 * 26.08881 * 6 5 4 8 8 O 1.42095 * 104.27690 * 153.95180 * 6 5 4 9 9 C 1.81405 * 104.44676 * 270.01978 * 6 5 4 10 10 C 1.52992 * 109.46843 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.47166 * 179.97438 * 10 9 6 12 12 C 1.50696 * 109.47268 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00206 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99757 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00102 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99670 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47439 * 90.00339 * 16 14 12 18 18 H 1.48507 * 109.46812 * 210.00056 * 16 14 12 19 19 H 1.48502 * 109.47390 * 329.99807 * 16 14 12 20 20 C 1.47277 * 117.89338 * 308.96055 * 5 4 2 21 21 C 1.52654 * 108.38687 * 49.56980 * 20 5 4 22 22 C 1.53726 * 110.27323 * 71.99428 * 21 20 5 23 23 C 1.54001 * 106.51163 * 95.32391 * 22 21 20 24 24 C 1.54306 * 106.57927 * 359.57872 * 23 22 21 25 25 C 1.54418 * 109.96982 * 187.05655 * 21 20 5 26 26 O 1.42219 * 110.82457 * 309.26221 * 21 20 5 27 27 H 1.08998 * 109.47197 * 299.90017 * 1 2 3 28 28 H 1.08997 * 109.46870 * 59.90182 * 1 2 3 29 29 H 1.08997 * 109.46948 * 179.89804 * 1 2 3 30 30 H 1.09002 * 109.63059 * 53.06965 * 4 2 1 31 31 H 1.09002 * 109.78512 * 292.59302 * 4 2 1 32 32 H 1.08996 * 109.46861 * 300.00004 * 9 6 5 33 33 H 1.08994 * 109.47112 * 59.99985 * 9 6 5 34 34 H 1.08996 * 109.47305 * 299.99621 * 10 9 6 35 35 H 1.09003 * 109.47252 * 59.99900 * 10 9 6 36 36 H 1.08993 * 109.47228 * 300.00439 * 11 10 9 37 37 H 1.09003 * 109.46973 * 59.99905 * 11 10 9 38 38 H 0.97002 * 119.99736 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.68904 * 289.84337 * 20 5 4 40 40 H 1.09003 * 109.71486 * 169.31256 * 20 5 4 41 41 H 1.09002 * 110.05844 * 336.04372 * 22 21 20 42 42 H 1.09000 * 110.05579 * 214.60283 * 22 21 20 43 43 H 1.08991 * 110.03646 * 118.86344 * 23 22 21 44 44 H 1.09001 * 110.03427 * 240.30099 * 23 22 21 45 45 H 1.09002 * 110.47883 * 142.19700 * 24 23 22 46 46 H 1.08997 * 110.47646 * 264.81137 * 24 23 22 47 47 H 1.09001 * 110.71722 * 160.44154 * 25 21 20 48 48 H 1.08999 * 110.92725 * 37.15336 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 1.2499 5 7 3.5030 -0.8654 1.1435 6 16 4.4990 -0.3928 2.3793 7 8 3.6884 -0.4967 3.5418 8 8 5.6596 -1.1972 2.2211 9 6 4.8748 1.3448 2.0185 10 6 5.7998 1.9021 3.1022 11 6 6.1174 3.3675 2.7975 12 6 7.0280 3.9167 3.8653 13 1 7.3486 3.2837 4.6796 14 6 7.4527 5.2269 3.8021 15 7 7.0627 5.9975 2.8104 16 14 8.5821 5.9074 5.1254 17 1 9.9966 5.6903 4.7287 18 1 8.3318 7.3619 5.2897 19 1 8.3157 5.2111 6.4097 20 6 4.0514 -1.4395 -0.0969 21 6 3.4259 -0.7097 -1.2829 22 6 3.9917 0.7157 -1.3898 23 6 5.1512 0.6516 -2.4013 24 6 5.2520 -0.8172 -2.8631 25 6 3.8386 -1.3973 -2.6025 26 8 2.0089 -0.6767 -1.1661 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0018 30 1 1.5829 -1.7110 1.3152 31 1 1.7938 -0.1457 2.1396 32 1 5.3675 1.4161 1.0488 33 1 3.9493 1.9202 1.9990 34 1 5.3076 1.8307 4.0720 35 1 6.7253 1.3265 3.1212 36 1 6.6097 3.4386 1.8278 37 1 5.1921 3.9433 2.7782 38 1 7.3618 6.9192 2.7658 39 1 3.8082 -2.5007 -0.1493 40 1 5.1335 -1.3097 -0.1152 41 1 4.3607 1.0453 -0.4185 42 1 3.2207 1.3980 -1.7476 43 1 4.9395 1.2974 -3.2534 44 1 6.0816 0.9573 -1.9227 45 1 5.4949 -0.8675 -3.9245 46 1 5.9979 -1.3516 -2.2747 47 1 3.1556 -1.1275 -3.4080 48 1 3.8816 -2.4796 -2.4807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592113757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:11 Heat of formation + Delta-G solvation = -159.052267 kcal Electronic energy + Delta-G solvation = -28465.990106 eV Core-core repulsion = 24646.246600 eV Total energy + Delta-G solvation = -3819.743506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38121 -38.42509 -37.62696 -37.18816 -36.52849 -35.92396 -34.21335 -33.16817 -30.00856 -29.60658 -29.32491 -27.34879 -25.90601 -25.35224 -22.97272 -22.32361 -21.28319 -20.46290 -19.81369 -18.90156 -18.61084 -18.05930 -17.42153 -17.28105 -16.78892 -16.50740 -16.38199 -15.93078 -15.66204 -15.25458 -14.98060 -14.55192 -14.29575 -14.18143 -13.93604 -13.84990 -13.57427 -13.44883 -13.31980 -13.25150 -13.12058 -13.03414 -12.82892 -12.79289 -12.69050 -12.55947 -12.28560 -12.19543 -12.07479 -12.00873 -11.85317 -11.79810 -11.58706 -11.35504 -11.29011 -11.10204 -10.88433 -10.59154 -9.78843 -8.24232 -6.35387 -0.91757 1.39442 1.39896 1.47711 1.51385 2.38461 2.62381 2.67145 2.96251 3.09516 3.41646 3.55801 3.60377 3.70517 3.75337 3.80192 3.93711 4.12121 4.17006 4.23311 4.31096 4.35461 4.43836 4.50219 4.53223 4.57085 4.69948 4.74250 4.76835 4.78747 4.87147 4.95945 4.99718 5.01819 5.06694 5.12029 5.15727 5.22842 5.26818 5.35956 5.40686 5.42545 5.45621 5.59156 5.76811 6.17287 6.30703 6.79750 7.34134 8.87155 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003473 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.649501 B = 8060.953533 C = 8635.185145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.068 3.932 3 H 0.064 0.936 4 C 0.086 3.914 5 N -1.000 6.000 6 S 2.619 3.381 7 O -0.980 6.980 8 O -0.981 6.981 9 C -0.611 4.611 10 C -0.103 4.103 11 C 0.034 3.966 12 C -0.553 4.553 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.099 3.901 21 C 0.103 3.897 22 C -0.160 4.160 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.101 4.101 26 O -0.368 6.368 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.830 -15.257 -12.734 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.009 3.991 3 H 0.082 0.918 4 C -0.039 4.039 5 N -0.838 5.838 6 S 2.716 3.284 7 O -0.971 6.971 8 O -0.971 6.971 9 C -0.742 4.742 10 C -0.143 4.143 11 C -0.004 4.004 12 C -0.591 4.591 13 H 0.078 0.922 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.026 4.026 21 C 0.061 3.939 22 C -0.198 4.198 23 C -0.166 4.166 24 C -0.161 4.161 25 C -0.139 4.139 26 O -0.287 6.287 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.663 -15.759 -12.194 23.088 hybrid contribution 0.768 1.522 0.501 1.777 sum -10.895 -14.237 -11.693 21.404 Atomic orbital electron populations 1.21750 0.90584 1.03766 1.03726 1.22616 0.96653 0.95379 0.84496 0.91792 1.22368 0.78196 1.03392 0.99902 1.57783 1.16785 1.77037 1.32189 1.04692 0.73080 0.77347 0.73314 1.93528 1.68702 1.86975 1.47877 1.93525 1.51086 1.66466 1.86015 1.30658 1.10571 1.23438 1.09511 1.21307 0.97584 0.99362 0.96015 1.18932 0.95500 0.90162 0.95845 1.21720 1.30027 0.97111 1.10259 0.92191 1.25908 0.97894 0.97377 0.98152 1.70068 1.46186 1.07697 1.32889 0.85497 0.78990 0.77517 0.79388 1.19706 1.20511 1.18904 1.22175 0.99378 0.98857 0.82184 1.22327 0.81168 0.94813 0.95552 1.22849 0.99394 0.97252 1.00292 1.22148 0.97610 0.98157 0.98701 1.22429 0.96297 0.94639 1.02690 1.22407 0.96783 1.00454 0.94281 1.87844 1.20137 1.77595 1.43135 0.89336 0.91219 0.91093 0.89146 0.87912 0.84083 0.83778 0.91478 0.91551 0.97906 0.97874 0.92622 0.89131 0.88311 0.92315 0.90642 0.90790 0.92015 0.89394 0.90832 0.89752 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.57 71.98 0.69 -1.16 16 2 C 0.07 1.20 3.16 30.69 0.10 1.30 16 3 H 0.06 1.18 7.05 -2.38 -0.02 1.16 16 4 C 0.09 1.69 5.78 86.34 0.50 2.19 16 5 N -1.00 -23.21 2.93 -512.46 -1.50 -24.71 16 6 S 2.62 78.65 5.42 -56.49 -0.31 78.35 16 7 O -0.98 -34.17 16.81 -127.65 -2.15 -36.32 16 8 O -0.98 -34.33 16.84 -127.65 -2.15 -36.48 16 9 C -0.61 -18.90 5.45 71.98 0.39 -18.51 16 10 C -0.10 -4.22 5.16 30.59 0.16 -4.06 16 11 C 0.03 1.74 4.97 29.85 0.15 1.89 16 12 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.01 0.29 5.46 84.66 0.46 0.75 16 15 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 16 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.10 2.03 4.90 86.12 0.42 2.45 16 21 C 0.10 1.91 0.90 -10.18 -0.01 1.90 16 22 C -0.16 -3.20 4.87 31.18 0.15 -3.05 16 23 C -0.13 -2.29 6.81 31.38 0.21 -2.08 16 24 C -0.12 -1.74 6.50 31.72 0.21 -1.53 16 25 C -0.10 -1.47 6.07 31.76 0.19 -1.28 16 26 O -0.37 -7.24 9.86 -148.98 -1.47 -8.71 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.94 7.21 -2.39 -0.02 1.93 16 32 H 0.14 3.97 6.38 -2.39 -0.02 3.95 16 33 H 0.14 3.92 8.14 -2.39 -0.02 3.90 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.09 1.65 8.06 -2.39 -0.02 1.63 16 40 H 0.10 2.06 6.81 -2.39 -0.02 2.04 16 41 H 0.06 1.28 4.88 -2.39 -0.01 1.27 16 42 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.02 7.91 -2.39 -0.02 1.00 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.09 1.07 7.97 -2.39 -0.02 1.06 16 Total: -1.00 -71.71 380.62 -0.48 -72.19 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.92 Total: 17.05 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 3.86 Total: -52.30 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -1.22 Total: -79.76 kcal Atomic # 8 Polarization: -75.74 SS G_CDS: -5.76 Total: -81.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 78.65 SS G_CDS: -0.31 Total: 78.35 kcal Total: -71.71 -0.48 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592113757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.863 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds