Wall clock time and date at job start Tue Mar 31 2020 16:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99693 * 2 1 4 4 O 1.42902 * 109.46900 * 135.00119 * 3 2 1 5 5 C 1.35902 * 116.99783 * 179.97438 * 4 3 2 6 6 C 1.38735 * 120.05455 * 180.02562 * 5 4 3 7 7 C 1.38145 * 119.94644 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.05036 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94047 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47343 * 89.99966 * 9 8 7 11 11 O 1.21277 * 120.00244 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00088 * 179.97438 * 10 9 8 13 13 C 1.47021 * 125.64696 * 0.04337 * 12 10 9 14 14 C 1.54326 * 107.27002 * 181.01910 * 13 12 10 15 15 C 1.55151 * 102.94313 * 22.19392 * 14 13 12 16 16 O 1.42901 * 111.00842 * 82.56580 * 15 14 13 17 17 C 1.50698 * 111.00641 * 206.42337 * 15 14 13 18 18 H 1.07993 * 120.00138 * 112.19363 * 17 15 14 19 19 C 1.37875 * 119.99529 * 292.19405 * 17 15 14 20 20 N 1.31514 * 120.00358 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99716 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47110 * 90.00108 * 21 19 17 23 23 H 1.48504 * 109.47044 * 209.99832 * 21 19 17 24 24 H 1.48500 * 109.47158 * 329.99853 * 21 19 17 25 25 C 1.47421 * 125.64852 * 179.97438 * 12 10 9 26 26 C 1.38266 * 120.11504 * 0.25182 * 8 7 6 27 27 C 1.38145 * 120.05176 * 359.45239 * 26 8 7 28 28 H 1.07997 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99552 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00036 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47318 * 15.00553 * 3 2 1 32 32 H 1.09000 * 109.47149 * 255.00132 * 3 2 1 33 33 H 1.08002 * 120.02488 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.97566 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47190 * 329.99661 * 9 8 7 36 36 H 1.09001 * 109.46692 * 210.00095 * 9 8 7 37 37 H 1.08996 * 109.88310 * 300.43775 * 13 12 10 38 38 H 1.09002 * 109.88672 * 61.44815 * 13 12 10 39 39 H 1.09000 * 110.72348 * 263.82382 * 14 13 12 40 40 H 1.09003 * 110.71705 * 140.55404 * 14 13 12 41 41 H 0.96708 * 113.99322 * 67.80350 * 16 15 14 42 42 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.36865 * 37.07626 * 25 12 10 44 44 H 1.09001 * 110.37117 * 274.74944 * 25 12 10 45 45 H 1.08001 * 119.96959 * 179.70937 * 26 8 7 46 46 H 1.08004 * 120.02323 * 180.29647 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9097 2.3450 1.0782 6 6 4.9605 2.3520 1.9839 7 6 5.7547 3.4753 2.1101 8 6 5.5025 4.5922 1.3349 9 6 6.3701 5.8164 1.4750 10 6 7.5291 5.7232 0.5164 11 8 7.6401 4.7575 -0.2088 12 7 8.4424 6.7130 0.4649 13 6 8.4299 7.9338 1.2841 14 6 9.6494 8.7806 0.8630 15 6 9.9621 8.2547 -0.5628 16 8 9.1235 8.8814 -1.5354 17 6 11.4175 8.4478 -0.9027 18 1 12.0645 7.5903 -1.0140 19 6 11.9230 9.7194 -1.0716 20 7 11.1350 10.7637 -0.9365 21 14 13.7273 9.9590 -1.4923 22 1 13.8950 9.9647 -2.9677 23 1 14.1978 11.2528 -0.9356 24 1 14.5233 8.8499 -0.9078 25 6 9.6201 6.7502 -0.4210 26 6 4.4523 4.5897 0.4356 27 6 3.6590 3.4667 0.3014 28 1 -0.5400 0.9352 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3854 2.1161 0.2661 32 1 2.4754 1.4868 -0.9926 33 1 5.1575 1.4800 2.5899 34 1 6.5731 3.4812 2.8147 35 1 6.7470 5.8798 2.4958 36 1 5.7822 6.7061 1.2489 37 1 7.5111 8.4918 1.1038 38 1 8.5037 7.6728 2.3398 39 1 10.4913 8.6041 1.5325 40 1 9.3926 9.8396 0.8357 41 1 9.3008 9.8241 -1.6586 42 1 11.4908 11.6582 -1.0550 43 1 9.3766 6.3233 -1.3940 44 1 10.4531 6.2127 0.0323 45 1 4.2545 5.4650 -0.1653 46 1 2.8418 3.4636 -0.4046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:30 Heat of formation + Delta-G solvation = -76.065194 kcal Electronic energy + Delta-G solvation = -27384.562650 eV Core-core repulsion = 23432.973782 eV Total energy + Delta-G solvation = -3951.588868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35820 -39.45581 -37.94675 -36.96871 -34.48254 -34.29239 -32.16980 -32.06737 -31.06773 -29.85165 -28.46140 -27.51179 -26.38473 -24.82382 -22.86381 -22.42126 -21.35442 -20.31116 -19.73050 -18.72436 -18.31069 -17.27184 -16.65239 -16.60492 -16.08559 -15.65050 -15.31458 -15.00264 -14.75800 -14.66732 -14.22354 -14.15543 -13.82249 -13.58992 -13.39001 -13.12478 -12.88150 -12.63800 -12.33596 -12.10374 -11.87352 -11.62574 -11.58993 -11.48347 -11.35699 -11.31551 -11.18600 -10.91240 -10.85231 -10.62584 -10.49691 -10.06632 -9.92537 -9.46860 -9.35260 -8.99919 -8.70406 -8.24010 -8.10778 -7.97103 -6.32636 -4.40233 1.34094 1.38722 1.64773 3.11123 3.13731 3.18234 3.25708 3.28754 3.49712 3.87612 4.24300 4.41905 4.60651 4.75423 4.78109 4.82322 4.92870 4.94362 5.02502 5.12599 5.22357 5.33851 5.37949 5.49117 5.53418 5.62195 5.68669 5.75106 5.85638 6.00081 6.00984 6.07808 6.15231 6.19792 6.28312 6.32602 6.43324 6.62689 6.65531 6.72062 6.86740 6.96699 7.27692 7.29924 7.30248 7.71073 7.96937 8.15875 8.61356 8.68926 9.28874 9.45387 10.75078 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.034095 B = 0.001956 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.048732 B =14313.241067 C =14404.128412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.086 3.914 4 O -0.314 6.314 5 C 0.123 3.877 6 C -0.150 4.150 7 C -0.066 4.066 8 C -0.093 4.093 9 C -0.095 4.095 10 C 0.523 3.477 11 O -0.547 6.547 12 N -0.609 5.609 13 C 0.100 3.900 14 C -0.139 4.139 15 C 0.248 3.752 16 O -0.584 6.584 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.120 3.880 26 C -0.064 4.064 27 C -0.207 4.207 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.385 0.615 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.124 0.876 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 -11.734 6.919 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.011 3.989 4 O -0.228 6.228 5 C 0.078 3.922 6 C -0.168 4.168 7 C -0.084 4.084 8 C -0.094 4.094 9 C -0.135 4.135 10 C 0.311 3.689 11 O -0.425 6.425 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.178 4.178 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.574 4.574 18 H 0.084 0.916 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.002 4.002 26 C -0.082 4.082 27 C -0.225 4.225 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.237 0.763 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.142 0.858 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.304 -12.887 6.589 22.559 hybrid contribution 1.141 1.079 -0.327 1.604 sum -16.163 -11.808 6.262 20.973 Atomic orbital electron populations 1.23880 0.95415 1.02552 0.99258 1.22693 0.95655 0.97877 1.00939 1.21810 0.87961 0.96658 0.92476 1.86057 1.42179 1.36034 1.58567 1.18940 0.91697 0.85852 0.95735 1.20327 0.95897 0.99737 1.00866 1.20792 0.97628 0.91643 0.98299 1.19259 0.96505 0.95441 0.98185 1.20599 0.95049 0.97431 1.00391 1.20059 0.82709 0.82002 0.84144 1.90682 1.76123 1.31932 1.43809 1.48631 1.25788 1.19791 1.39952 1.22159 1.00842 0.85896 0.93431 1.23199 0.94515 0.99588 1.00501 1.19591 0.88950 0.86198 0.84510 1.86102 1.62109 1.29328 1.61930 1.21492 0.93928 0.93022 1.48912 0.91635 1.24990 0.98677 0.95641 0.93694 1.69558 1.35946 0.98691 1.49606 0.86400 0.84031 0.77641 0.78820 1.20380 1.21023 1.19689 1.22369 0.85690 0.98681 0.93425 1.20790 0.93740 0.97634 0.96073 1.21133 1.03737 0.94229 1.03428 0.88230 0.87463 0.86249 0.91503 0.90942 0.85334 0.85462 0.88349 0.88293 0.92387 0.92837 0.91350 0.89879 0.76265 0.92065 0.91193 0.91208 0.85829 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.14 9.89 -36.03 -0.36 -1.50 16 3 C 0.09 0.75 5.15 36.00 0.19 0.94 16 4 O -0.31 -3.72 10.12 -19.43 -0.20 -3.92 16 5 C 0.12 1.56 6.69 -39.22 -0.26 1.30 16 6 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 7 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 8 C -0.09 -1.29 4.37 -104.60 -0.46 -1.74 16 9 C -0.09 -1.29 5.02 -29.03 -0.15 -1.43 16 10 C 0.52 9.72 7.84 -10.99 -0.09 9.63 16 11 O -0.55 -12.12 16.29 5.56 0.09 -12.03 16 12 N -0.61 -11.86 3.33 -170.51 -0.57 -12.42 16 13 C 0.10 1.73 6.49 -3.06 -0.02 1.71 16 14 C -0.14 -2.90 5.64 -24.90 -0.14 -3.04 16 15 C 0.25 5.92 0.89 -89.61 -0.08 5.84 16 16 O -0.58 -14.87 13.18 -35.23 -0.46 -15.34 16 17 C -0.54 -13.77 8.25 -34.44 -0.28 -14.05 16 18 H 0.07 1.68 7.77 -52.49 -0.41 1.27 16 19 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 20 N -0.90 -22.77 10.79 55.43 0.60 -22.17 16 21 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.12 2.68 6.08 -2.52 -0.02 2.66 16 26 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 27 C -0.21 -2.53 9.04 -39.44 -0.36 -2.88 16 28 H 0.10 0.50 7.90 -52.49 -0.41 0.08 16 29 H 0.11 0.48 8.06 -52.49 -0.42 0.05 16 30 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.07 0.51 7.38 -51.93 -0.38 0.12 16 32 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 40 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 41 H 0.39 9.87 6.93 45.56 0.32 10.19 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.07 1.68 8.04 -51.93 -0.42 1.26 16 44 H 0.07 1.51 8.01 -51.93 -0.42 1.10 16 45 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -30.16 385.82 -8.82 -38.97 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.21 Total: 12.35 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.86 Total: -6.18 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.03 Total: -34.59 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.57 Total: -31.29 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.16 -8.82 -38.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.092 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds