Wall clock time and date at job start Tue Mar 31 2020 16:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99693 * 2 1 4 4 O 1.42902 * 109.46900 * 135.00119 * 3 2 1 5 5 C 1.35902 * 116.99783 * 179.97438 * 4 3 2 6 6 C 1.38735 * 120.05455 * 180.02562 * 5 4 3 7 7 C 1.38145 * 119.94644 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.05036 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94047 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47343 * 89.99966 * 9 8 7 11 11 O 1.21277 * 120.00244 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00088 * 179.97438 * 10 9 8 13 13 C 1.47021 * 125.64696 * 0.04337 * 12 10 9 14 14 C 1.54326 * 107.27002 * 181.01910 * 13 12 10 15 15 C 1.55151 * 102.94313 * 22.19392 * 14 13 12 16 16 O 1.42901 * 111.00842 * 82.56580 * 15 14 13 17 17 C 1.50698 * 111.00641 * 206.42337 * 15 14 13 18 18 H 1.07993 * 120.00138 * 112.19363 * 17 15 14 19 19 C 1.37875 * 119.99529 * 292.19405 * 17 15 14 20 20 N 1.31514 * 120.00358 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99716 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47110 * 90.00108 * 21 19 17 23 23 H 1.48504 * 109.47044 * 209.99832 * 21 19 17 24 24 H 1.48500 * 109.47158 * 329.99853 * 21 19 17 25 25 C 1.47421 * 125.64852 * 179.97438 * 12 10 9 26 26 C 1.38266 * 120.11504 * 0.25182 * 8 7 6 27 27 C 1.38145 * 120.05176 * 359.45239 * 26 8 7 28 28 H 1.07997 * 120.00396 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99552 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00036 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47318 * 15.00553 * 3 2 1 32 32 H 1.09000 * 109.47149 * 255.00132 * 3 2 1 33 33 H 1.08002 * 120.02488 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.97566 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47190 * 329.99661 * 9 8 7 36 36 H 1.09001 * 109.46692 * 210.00095 * 9 8 7 37 37 H 1.08996 * 109.88310 * 300.43775 * 13 12 10 38 38 H 1.09002 * 109.88672 * 61.44815 * 13 12 10 39 39 H 1.09000 * 110.72348 * 263.82382 * 14 13 12 40 40 H 1.09003 * 110.71705 * 140.55404 * 14 13 12 41 41 H 0.96708 * 113.99322 * 67.80350 * 16 15 14 42 42 H 0.96999 * 120.00046 * 179.97438 * 20 19 17 43 43 H 1.09002 * 110.36865 * 37.07626 * 25 12 10 44 44 H 1.09001 * 110.37117 * 274.74944 * 25 12 10 45 45 H 1.08001 * 119.96959 * 179.70937 * 26 8 7 46 46 H 1.08004 * 120.02323 * 180.29647 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9097 2.3450 1.0782 6 6 4.9605 2.3520 1.9839 7 6 5.7547 3.4753 2.1101 8 6 5.5025 4.5922 1.3349 9 6 6.3701 5.8164 1.4750 10 6 7.5291 5.7232 0.5164 11 8 7.6401 4.7575 -0.2088 12 7 8.4424 6.7130 0.4649 13 6 8.4299 7.9338 1.2841 14 6 9.6494 8.7806 0.8630 15 6 9.9621 8.2547 -0.5628 16 8 9.1235 8.8814 -1.5354 17 6 11.4175 8.4478 -0.9027 18 1 12.0645 7.5903 -1.0140 19 6 11.9230 9.7194 -1.0716 20 7 11.1350 10.7637 -0.9365 21 14 13.7273 9.9590 -1.4923 22 1 13.8950 9.9647 -2.9677 23 1 14.1978 11.2528 -0.9356 24 1 14.5233 8.8499 -0.9078 25 6 9.6201 6.7502 -0.4210 26 6 4.4523 4.5897 0.4356 27 6 3.6590 3.4667 0.3014 28 1 -0.5400 0.9352 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3854 2.1161 0.2661 32 1 2.4754 1.4868 -0.9926 33 1 5.1575 1.4800 2.5899 34 1 6.5731 3.4812 2.8147 35 1 6.7470 5.8798 2.4958 36 1 5.7822 6.7061 1.2489 37 1 7.5111 8.4918 1.1038 38 1 8.5037 7.6728 2.3398 39 1 10.4913 8.6041 1.5325 40 1 9.3926 9.8396 0.8357 41 1 9.3008 9.8241 -1.6586 42 1 11.4908 11.6582 -1.0550 43 1 9.3766 6.3233 -1.3940 44 1 10.4531 6.2127 0.0323 45 1 4.2545 5.4650 -0.1653 46 1 2.8418 3.4636 -0.4046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:29 Heat of formation + Delta-G solvation = -94.329984 kcal Electronic energy + Delta-G solvation = -27385.354671 eV Core-core repulsion = 23432.973782 eV Total energy + Delta-G solvation = -3952.380889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.38089 -40.80992 -39.20367 -38.32937 -36.06050 -35.08534 -34.13281 -33.15286 -31.99618 -31.45913 -30.05406 -28.56410 -27.40704 -26.43421 -23.95896 -23.72184 -22.42668 -21.49413 -20.87411 -20.16523 -19.19487 -19.13693 -18.08726 -17.46381 -17.00733 -16.92319 -16.84030 -16.59538 -16.00419 -15.81386 -15.54149 -15.24502 -15.18656 -14.79111 -14.40166 -14.36971 -13.98869 -13.74706 -13.68198 -13.58551 -13.30793 -13.20990 -13.03955 -12.80599 -12.63307 -12.53730 -12.44810 -12.25316 -12.12170 -12.06083 -11.84649 -11.70048 -11.29333 -10.89674 -10.62853 -10.45301 -10.13788 -9.94193 -9.52799 -9.06870 -8.25179 -6.39425 0.39036 0.41250 1.12174 1.42001 1.45456 1.53799 1.69304 2.11416 2.38804 2.40570 2.81528 3.00073 3.68901 3.75262 3.79480 3.90829 3.94215 3.95857 4.05895 4.09127 4.23127 4.30063 4.39276 4.40765 4.43150 4.50083 4.58934 4.62780 4.67803 4.73284 4.78801 4.91976 4.95847 5.08173 5.20599 5.26485 5.32933 5.36869 5.46233 5.55221 5.59492 5.63998 5.65499 5.78309 5.82310 6.06600 6.43138 6.62847 6.70187 7.22254 7.31991 7.46422 8.81085 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.034095 B = 0.001956 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.048732 B =14313.241067 C =14404.128412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.178 4.178 3 C 0.080 3.920 4 O -0.327 6.327 5 C 0.114 3.886 6 C -0.162 4.162 7 C -0.072 4.072 8 C -0.113 4.113 9 C -0.082 4.082 10 C 0.518 3.482 11 O -0.590 6.590 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.131 4.131 15 C 0.233 3.767 16 O -0.596 6.596 17 C -0.562 4.562 18 H 0.055 0.945 19 C 0.037 3.963 20 N -0.909 5.909 21 Si 0.960 3.040 22 H -0.281 1.281 23 H -0.277 1.277 24 H -0.272 1.272 25 C 0.125 3.875 26 C -0.077 4.077 27 C -0.212 4.212 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.381 0.619 42 H 0.273 0.727 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.132 0.868 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.307 -11.655 8.307 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C 0.006 3.994 4 O -0.241 6.241 5 C 0.069 3.931 6 C -0.181 4.181 7 C -0.090 4.090 8 C -0.113 4.113 9 C -0.121 4.121 10 C 0.309 3.691 11 O -0.471 6.471 12 N -0.345 5.345 13 C -0.016 4.016 14 C -0.169 4.169 15 C 0.193 3.807 16 O -0.406 6.406 17 C -0.601 4.601 18 H 0.073 0.927 19 C -0.164 4.164 20 N -0.549 5.549 21 Si 0.786 3.214 22 H -0.207 1.207 23 H -0.202 1.202 24 H -0.196 1.196 25 C 0.002 3.998 26 C -0.096 4.096 27 C -0.230 4.230 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.150 0.850 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.561 -12.800 7.999 23.924 hybrid contribution 1.455 0.989 -0.822 1.942 sum -17.107 -11.810 7.177 21.992 Atomic orbital electron populations 1.24124 0.94852 1.03827 0.96563 1.22683 0.96262 0.97225 1.03415 1.22027 0.87517 0.97958 0.91921 1.86048 1.42821 1.35830 1.59425 1.19147 0.91906 0.86270 0.95772 1.20588 0.96015 1.00261 1.01198 1.21036 0.97985 0.91467 0.98520 1.19417 0.97002 0.95963 0.98963 1.20612 0.92918 0.98259 1.00314 1.21013 0.83147 0.80768 0.84157 1.90660 1.77132 1.33584 1.45752 1.48722 1.25194 1.20892 1.39713 1.22229 0.99739 0.84572 0.95070 1.22988 0.96126 0.99480 0.98351 1.19790 0.88064 0.87077 0.85817 1.86088 1.62493 1.29065 1.62945 1.21724 0.95082 0.93149 1.50107 0.92681 1.25596 1.02016 0.95359 0.93474 1.69612 1.37045 0.98873 1.49333 0.85531 0.80021 0.77696 0.78196 1.20673 1.20165 1.19627 1.22099 0.87184 0.97598 0.92897 1.21030 0.94015 0.98318 0.96197 1.21369 1.04184 0.93819 1.03635 0.87223 0.85883 0.86495 0.90293 0.90900 0.84135 0.83936 0.85246 0.86196 0.90608 0.88756 0.91647 0.90980 0.76750 0.91778 0.94088 0.91222 0.85036 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 14.31 67.78 0.97 -0.55 16 2 C -0.18 -2.46 9.89 25.64 0.25 -2.20 16 3 C 0.08 1.33 5.15 71.24 0.37 1.69 16 4 O -0.33 -7.55 10.12 -92.45 -0.94 -8.49 16 5 C 0.11 2.83 6.69 22.50 0.15 2.98 16 6 C -0.16 -3.95 9.99 22.37 0.22 -3.73 16 7 C -0.07 -1.77 9.69 22.25 0.22 -1.55 16 8 C -0.11 -2.93 4.37 -19.85 -0.09 -3.02 16 9 C -0.08 -2.00 5.02 29.10 0.15 -1.85 16 10 C 0.52 18.63 7.84 87.66 0.69 19.32 16 11 O -0.59 -26.28 16.29 -3.02 -0.05 -26.32 16 12 N -0.61 -23.15 3.33 -811.76 -2.70 -25.85 16 13 C 0.11 3.38 6.49 86.73 0.56 3.94 16 14 C -0.13 -5.32 5.64 31.78 0.18 -5.14 16 15 C 0.23 11.22 0.89 -10.14 -0.01 11.21 16 16 O -0.60 -30.80 13.18 -148.98 -1.96 -32.76 16 17 C -0.56 -29.37 8.25 25.60 0.21 -29.16 16 18 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 19 C 0.04 1.85 5.30 84.65 0.45 2.30 16 20 N -0.91 -45.95 10.79 21.45 0.23 -45.72 16 21 Si 0.96 40.81 29.54 68.60 2.03 42.84 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 C 0.13 5.69 6.08 86.86 0.53 6.22 16 26 C -0.08 -1.96 9.69 22.25 0.22 -1.74 16 27 C -0.21 -4.97 9.04 22.36 0.20 -4.76 16 28 H 0.11 0.83 7.90 -2.91 -0.02 0.81 16 29 H 0.12 0.80 8.06 -2.91 -0.02 0.77 16 30 H 0.12 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.08 1.08 7.38 -2.38 -0.02 1.06 16 32 H 0.07 1.16 7.66 -2.39 -0.02 1.15 16 33 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 36 H 0.12 2.45 8.08 -2.39 -0.02 2.43 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 2.66 8.03 -2.39 -0.02 2.64 16 40 H 0.07 3.07 7.85 -2.39 -0.02 3.06 16 41 H 0.38 19.86 6.93 -74.05 -0.51 19.35 16 42 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 43 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 44 H 0.07 3.10 8.01 -2.39 -0.02 3.08 16 45 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 46 H 0.14 2.65 6.30 -2.91 -0.02 2.63 16 Total: -1.00 -65.99 385.82 2.34 -63.65 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.47 Total: 38.70 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.27 Total: -6.04 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.47 Total: -71.57 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -2.95 Total: -67.57 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -65.99 2.34 -63.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.679 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds