Wall clock time and date at job start Tue Mar 31 2020 16:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50706 * 119.99994 * 2 1 4 4 O 1.42895 * 109.47266 * 135.00005 * 3 2 1 5 5 C 1.35904 * 117.00098 * 179.97438 * 4 3 2 6 6 C 1.38729 * 120.05618 * 179.97438 * 5 4 3 7 7 C 1.38142 * 119.94323 * 179.97438 * 6 5 4 8 8 C 1.38260 * 120.05795 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.94698 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47527 * 270.04251 * 9 8 7 11 11 O 1.21280 * 119.99645 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00342 * 179.97438 * 10 9 8 13 13 C 1.47424 * 125.65065 * 0.02562 * 12 10 9 14 14 C 1.54907 * 104.83433 * 204.09032 * 13 12 10 15 15 C 1.55154 * 101.58214 * 322.99058 * 14 13 12 16 16 O 1.42898 * 110.72028 * 276.96004 * 15 14 13 17 17 C 1.50701 * 110.71954 * 153.86244 * 15 14 13 18 18 H 1.07997 * 119.99891 * 5.09548 * 17 15 14 19 19 C 1.37872 * 120.00009 * 185.09316 * 17 15 14 20 20 N 1.31515 * 120.00197 * 183.77429 * 19 17 15 21 21 Si 1.86798 * 120.00037 * 3.77444 * 19 17 15 22 22 H 1.48498 * 109.47074 * 84.82764 * 21 19 17 23 23 H 1.48502 * 109.47447 * 204.83165 * 21 19 17 24 24 H 1.48497 * 109.47271 * 324.82956 * 21 19 17 25 25 C 1.47025 * 125.64771 * 179.71263 * 12 10 9 26 26 C 1.38274 * 120.11233 * 0.03632 * 8 7 6 27 27 C 1.38143 * 120.05267 * 359.96173 * 26 8 7 28 28 H 1.07998 * 120.00024 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00060 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00299 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47362 * 14.99584 * 3 2 1 32 32 H 1.09009 * 109.46870 * 255.00042 * 3 2 1 33 33 H 1.07999 * 120.02644 * 359.70259 * 6 5 4 34 34 H 1.08008 * 119.96944 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47472 * 30.04314 * 9 8 7 36 36 H 1.09008 * 109.47474 * 150.03922 * 9 8 7 37 37 H 1.09001 * 110.36667 * 322.93616 * 13 12 10 38 38 H 1.09009 * 110.36707 * 85.24961 * 13 12 10 39 39 H 1.09001 * 110.99870 * 81.06594 * 14 13 12 40 40 H 1.08996 * 111.00520 * 204.87211 * 14 13 12 41 41 H 0.96703 * 113.99750 * 298.55084 * 16 15 14 42 42 H 0.96996 * 120.00324 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.88494 * 298.39307 * 25 12 10 44 44 H 1.09000 * 109.88116 * 59.56339 * 25 12 10 45 45 H 1.07993 * 119.97474 * 179.97438 * 26 8 7 46 46 H 1.07995 * 120.03174 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9096 2.3450 1.0781 6 6 4.9598 2.3525 1.9846 7 6 5.7546 3.4754 2.1099 8 6 5.5045 4.5911 1.3325 9 6 6.3727 5.8149 1.4717 10 6 5.7919 6.7262 2.5220 11 8 4.7728 6.4130 3.1002 12 7 6.4047 7.8893 2.8187 13 6 7.6429 8.3915 2.1957 14 6 8.2482 9.3607 3.2415 15 6 6.9730 10.0221 3.8280 16 8 6.5350 11.0997 2.9981 17 6 7.2203 10.5017 5.2351 18 1 8.2099 10.4348 5.6623 19 6 6.1831 11.0259 5.9769 20 7 6.4131 11.5126 7.1769 21 14 4.4510 11.0449 5.2777 22 1 3.7961 9.7386 5.5421 23 1 3.6688 12.1302 5.9223 24 1 4.5110 11.2810 3.8129 25 6 5.9456 8.8705 3.8127 26 6 4.4583 4.5863 0.4284 27 6 3.6606 3.4658 0.2993 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4754 1.4868 -0.9927 33 1 5.1531 1.4827 2.5949 34 1 6.5720 3.4818 2.8158 35 1 7.3784 5.5153 1.7665 36 1 6.4153 6.3406 0.5177 37 1 8.3296 7.5681 1.9992 38 1 7.4140 8.9241 1.2725 39 1 8.7940 8.8143 4.0106 40 1 8.8885 10.1017 2.7629 41 1 7.1784 11.8165 2.9121 42 1 5.6835 11.8817 7.6987 43 1 4.9636 9.2510 3.5320 44 1 5.8978 8.4058 4.7976 45 1 4.2647 5.4591 -0.1774 46 1 2.8433 3.4626 -0.4066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:34 Heat of formation + Delta-G solvation = -63.010023 kcal Electronic energy + Delta-G solvation = -27648.944925 eV Core-core repulsion = 23697.922171 eV Total energy + Delta-G solvation = -3951.022753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41876 -39.63863 -38.11911 -37.18813 -34.55643 -34.49568 -32.45836 -32.14237 -31.11754 -30.17398 -28.76050 -27.62686 -26.46835 -24.64603 -22.92532 -22.81160 -21.49557 -20.33245 -19.80755 -19.01404 -18.35957 -17.26337 -16.82396 -16.69201 -16.15821 -15.86573 -15.56841 -15.02631 -14.82778 -14.75438 -14.45748 -14.10634 -13.92057 -13.68287 -13.51444 -13.09534 -12.92536 -12.75606 -12.70402 -12.49165 -12.03549 -11.92150 -11.71257 -11.64774 -11.54474 -11.38970 -11.25350 -10.94725 -10.89541 -10.64761 -10.30736 -10.16425 -9.94423 -9.51572 -9.08589 -9.04529 -8.74978 -8.49450 -8.15977 -8.12702 -6.24051 -4.36652 1.29287 1.33129 1.63244 2.99059 3.10689 3.28754 3.39370 3.48040 3.61967 3.78934 4.39577 4.41800 4.59671 4.69030 4.71554 4.75860 4.87870 4.89713 5.01702 5.06782 5.13562 5.18874 5.26283 5.28085 5.36026 5.44262 5.53853 5.56665 5.64237 5.68611 5.92996 5.96240 6.06376 6.07768 6.14097 6.17534 6.26150 6.46389 6.52214 6.56726 6.61667 6.67054 6.75030 7.03275 7.25872 7.46588 7.97927 8.17121 8.55626 8.70645 8.87231 9.39234 10.85989 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.002385 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.973518 B =11735.864724 C =12414.602125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.086 3.914 4 O -0.314 6.314 5 C 0.124 3.876 6 C -0.149 4.149 7 C -0.064 4.064 8 C -0.096 4.096 9 C -0.093 4.093 10 C 0.521 3.479 11 O -0.540 6.540 12 N -0.613 5.613 13 C 0.100 3.900 14 C -0.146 4.146 15 C 0.215 3.785 16 O -0.573 6.573 17 C -0.552 4.552 18 H 0.081 0.919 19 C 0.090 3.910 20 N -0.884 5.884 21 Si 0.864 3.136 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.228 1.228 25 C 0.113 3.887 26 C -0.065 4.065 27 C -0.207 4.207 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.365 0.635 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.123 0.877 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -17.945 -17.587 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.011 3.989 4 O -0.228 6.228 5 C 0.079 3.921 6 C -0.168 4.168 7 C -0.082 4.082 8 C -0.097 4.097 9 C -0.133 4.133 10 C 0.309 3.691 11 O -0.417 6.417 12 N -0.347 5.347 13 C -0.023 4.023 14 C -0.184 4.184 15 C 0.174 3.826 16 O -0.380 6.380 17 C -0.589 4.589 18 H 0.099 0.901 19 C -0.116 4.116 20 N -0.520 5.520 21 Si 0.691 3.309 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.151 1.151 25 C -0.009 4.009 26 C -0.083 4.083 27 C -0.226 4.226 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.212 0.788 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.141 0.859 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.583 -18.661 -17.090 25.557 hybrid contribution -0.545 0.618 -0.202 0.848 sum -4.128 -18.044 -17.292 25.331 Atomic orbital electron populations 1.23901 0.95456 1.02631 0.98898 1.22672 0.95665 0.97785 1.01255 1.21810 0.88036 0.96805 0.92221 1.86063 1.42126 1.35929 1.58653 1.18954 0.91512 0.85962 0.95655 1.20344 0.95889 1.00017 1.00517 1.20810 0.98643 0.91707 0.97051 1.19235 0.97727 0.94595 0.98119 1.20599 0.99591 0.93702 0.99437 1.20159 0.84334 0.80722 0.83930 1.90713 1.24448 1.73529 1.53052 1.48699 1.26435 1.19372 1.40165 1.22358 0.85566 0.97363 0.96983 1.23325 0.99107 0.98392 0.97573 1.19981 0.88054 0.84072 0.90450 1.86516 1.47212 1.32396 1.71875 1.21193 0.98139 1.43565 0.96004 0.90133 1.24972 0.99552 0.92847 0.94187 1.69912 1.33127 1.38188 1.10797 0.87224 0.83695 0.77669 0.82356 1.20475 1.22259 1.15116 1.22574 0.98272 0.88420 0.91606 1.20762 0.93323 0.97013 0.97178 1.21130 1.03361 0.94363 1.03744 0.88176 0.87423 0.86267 0.91439 0.91075 0.85242 0.85350 0.88140 0.88311 0.91478 0.91589 0.90198 0.90555 0.78755 0.92262 0.92264 0.89942 0.85925 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 14.31 29.02 0.42 -0.64 16 2 C -0.16 -1.15 9.89 -36.02 -0.36 -1.50 16 3 C 0.09 0.74 5.15 36.01 0.19 0.93 16 4 O -0.31 -3.69 10.12 -19.44 -0.20 -3.88 16 5 C 0.12 1.56 6.69 -39.22 -0.26 1.30 16 6 C -0.15 -1.87 9.99 -39.44 -0.39 -2.26 16 7 C -0.06 -0.82 9.69 -39.61 -0.38 -1.20 16 8 C -0.10 -1.28 4.37 -104.60 -0.46 -1.73 16 9 C -0.09 -1.18 4.83 -29.04 -0.14 -1.32 16 10 C 0.52 9.41 7.84 -10.99 -0.09 9.32 16 11 O -0.54 -12.07 16.36 5.56 0.09 -11.98 16 12 N -0.61 -11.47 3.33 -170.51 -0.57 -12.04 16 13 C 0.10 1.49 6.68 -2.53 -0.02 1.47 16 14 C -0.15 -2.50 6.22 -24.59 -0.15 -2.65 16 15 C 0.21 4.70 0.68 -89.93 -0.06 4.64 16 16 O -0.57 -12.18 10.47 -35.23 -0.37 -12.54 16 17 C -0.55 -14.55 8.72 -34.44 -0.30 -14.85 16 18 H 0.08 2.27 8.03 -52.49 -0.42 1.85 16 19 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 20 N -0.88 -26.30 13.96 55.43 0.77 -25.52 16 21 Si 0.86 22.01 23.99 -169.99 -4.08 17.94 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.23 -5.69 5.40 56.52 0.31 -5.38 16 25 C 0.11 2.57 4.39 -3.06 -0.01 2.56 16 26 C -0.06 -0.82 9.69 -39.60 -0.38 -1.20 16 27 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 28 H 0.10 0.56 7.90 -52.49 -0.41 0.14 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.07 0.56 7.38 -51.93 -0.38 0.17 16 32 H 0.07 0.52 7.66 -51.92 -0.40 0.12 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 35 H 0.10 1.03 7.79 -51.93 -0.40 0.62 16 36 H 0.10 1.02 8.09 -51.92 -0.42 0.60 16 37 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 38 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.37 6.49 9.10 45.56 0.41 6.90 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.06 1.46 5.69 -51.93 -0.30 1.16 16 44 H 0.08 2.06 7.62 -51.93 -0.40 1.66 16 45 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 46 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -34.46 377.46 -7.57 -42.03 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.05 Total: 7.82 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.86 Total: -7.51 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.21 Total: -37.56 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.47 Total: -28.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.08 Total: 17.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.46 -7.57 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.981 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds