Wall clock time and date at job start Tue Mar 31 2020 16:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50706 * 119.99994 * 2 1 4 4 O 1.42895 * 109.47266 * 135.00005 * 3 2 1 5 5 C 1.35904 * 117.00098 * 179.97438 * 4 3 2 6 6 C 1.38729 * 120.05618 * 179.97438 * 5 4 3 7 7 C 1.38142 * 119.94323 * 179.97438 * 6 5 4 8 8 C 1.38260 * 120.05795 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.94698 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47527 * 270.04251 * 9 8 7 11 11 O 1.21280 * 119.99645 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00342 * 179.97438 * 10 9 8 13 13 C 1.47424 * 125.65065 * 0.02562 * 12 10 9 14 14 C 1.54907 * 104.83433 * 204.09032 * 13 12 10 15 15 C 1.55154 * 101.58214 * 322.99058 * 14 13 12 16 16 O 1.42898 * 110.72028 * 276.96004 * 15 14 13 17 17 C 1.50701 * 110.71954 * 153.86244 * 15 14 13 18 18 H 1.07997 * 119.99891 * 5.09548 * 17 15 14 19 19 C 1.37872 * 120.00009 * 185.09316 * 17 15 14 20 20 N 1.31515 * 120.00197 * 183.77429 * 19 17 15 21 21 Si 1.86798 * 120.00037 * 3.77444 * 19 17 15 22 22 H 1.48498 * 109.47074 * 84.82764 * 21 19 17 23 23 H 1.48502 * 109.47447 * 204.83165 * 21 19 17 24 24 H 1.48497 * 109.47271 * 324.82956 * 21 19 17 25 25 C 1.47025 * 125.64771 * 179.71263 * 12 10 9 26 26 C 1.38274 * 120.11233 * 0.03632 * 8 7 6 27 27 C 1.38143 * 120.05267 * 359.96173 * 26 8 7 28 28 H 1.07998 * 120.00024 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00060 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00299 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47362 * 14.99584 * 3 2 1 32 32 H 1.09009 * 109.46870 * 255.00042 * 3 2 1 33 33 H 1.07999 * 120.02644 * 359.70259 * 6 5 4 34 34 H 1.08008 * 119.96944 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47472 * 30.04314 * 9 8 7 36 36 H 1.09008 * 109.47474 * 150.03922 * 9 8 7 37 37 H 1.09001 * 110.36667 * 322.93616 * 13 12 10 38 38 H 1.09009 * 110.36707 * 85.24961 * 13 12 10 39 39 H 1.09001 * 110.99870 * 81.06594 * 14 13 12 40 40 H 1.08996 * 111.00520 * 204.87211 * 14 13 12 41 41 H 0.96703 * 113.99750 * 298.55084 * 16 15 14 42 42 H 0.96996 * 120.00324 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.88494 * 298.39307 * 25 12 10 44 44 H 1.09000 * 109.88116 * 59.56339 * 25 12 10 45 45 H 1.07993 * 119.97474 * 179.97438 * 26 8 7 46 46 H 1.07995 * 120.03174 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9096 2.3450 1.0781 6 6 4.9598 2.3525 1.9846 7 6 5.7546 3.4754 2.1099 8 6 5.5045 4.5911 1.3325 9 6 6.3727 5.8149 1.4717 10 6 5.7919 6.7262 2.5220 11 8 4.7728 6.4130 3.1002 12 7 6.4047 7.8893 2.8187 13 6 7.6429 8.3915 2.1957 14 6 8.2482 9.3607 3.2415 15 6 6.9730 10.0221 3.8280 16 8 6.5350 11.0997 2.9981 17 6 7.2203 10.5017 5.2351 18 1 8.2099 10.4348 5.6623 19 6 6.1831 11.0259 5.9769 20 7 6.4131 11.5126 7.1769 21 14 4.4510 11.0449 5.2777 22 1 3.7961 9.7386 5.5421 23 1 3.6688 12.1302 5.9223 24 1 4.5110 11.2810 3.8129 25 6 5.9456 8.8705 3.8127 26 6 4.4583 4.5863 0.4284 27 6 3.6606 3.4658 0.2993 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3855 2.1161 0.2659 32 1 2.4754 1.4868 -0.9927 33 1 5.1531 1.4827 2.5949 34 1 6.5720 3.4818 2.8158 35 1 7.3784 5.5153 1.7665 36 1 6.4153 6.3406 0.5177 37 1 8.3296 7.5681 1.9992 38 1 7.4140 8.9241 1.2725 39 1 8.7940 8.8143 4.0106 40 1 8.8885 10.1017 2.7629 41 1 7.1784 11.8165 2.9121 42 1 5.6835 11.8817 7.6987 43 1 4.9636 9.2510 3.5320 44 1 5.8978 8.4058 4.7976 45 1 4.2647 5.4591 -0.1774 46 1 2.8433 3.4626 -0.4066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:33 Heat of formation + Delta-G solvation = -87.732634 kcal Electronic energy + Delta-G solvation = -27650.016977 eV Core-core repulsion = 23697.922171 eV Total energy + Delta-G solvation = -3952.094806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44031 -40.90225 -39.36919 -38.39837 -36.14742 -35.10550 -34.55161 -33.18748 -32.01107 -31.65146 -30.29618 -28.66061 -27.43739 -26.30369 -24.25254 -23.76296 -22.48581 -21.50799 -20.90019 -20.37685 -19.22286 -19.17050 -18.20366 -17.58086 -17.28031 -16.96403 -16.68902 -16.63505 -16.27816 -15.87587 -15.62863 -15.22692 -15.20049 -14.97463 -14.51315 -14.40997 -14.38950 -14.04937 -13.72217 -13.62044 -13.49161 -13.39352 -13.20165 -12.81109 -12.70047 -12.53416 -12.36521 -12.14233 -12.11267 -12.09260 -11.98835 -11.71463 -11.07634 -10.94497 -10.84823 -10.47526 -10.26020 -9.95600 -9.63585 -9.08520 -8.43683 -6.54924 0.37152 0.39856 1.09803 1.27722 1.34209 1.53939 1.64270 2.04203 2.28940 2.37542 2.79399 2.93643 3.48559 3.70678 3.74670 3.82807 3.87735 3.91997 3.94204 4.04980 4.21346 4.25521 4.28220 4.35670 4.39727 4.44563 4.47995 4.56891 4.64406 4.68728 4.75766 4.84745 4.93408 5.00823 5.07112 5.16939 5.25625 5.27282 5.34541 5.41905 5.52757 5.56935 5.62535 5.63364 5.81269 6.05166 6.41653 6.56581 6.63329 7.16044 7.17427 7.32615 8.70262 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.002385 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.973518 B =11735.864724 C =12414.602125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.080 3.920 4 O -0.328 6.328 5 C 0.114 3.886 6 C -0.165 4.165 7 C -0.074 4.074 8 C -0.115 4.115 9 C -0.079 4.079 10 C 0.515 3.485 11 O -0.593 6.593 12 N -0.616 5.616 13 C 0.103 3.897 14 C -0.139 4.139 15 C 0.211 3.789 16 O -0.577 6.577 17 C -0.541 4.541 18 H 0.055 0.945 19 C 0.043 3.957 20 N -0.929 5.929 21 Si 0.915 3.085 22 H -0.297 1.297 23 H -0.297 1.297 24 H -0.216 1.216 25 C 0.116 3.884 26 C -0.075 4.075 27 C -0.212 4.212 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.382 0.618 42 H 0.267 0.733 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -18.844 -20.842 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C 0.006 3.994 4 O -0.242 6.242 5 C 0.069 3.931 6 C -0.183 4.183 7 C -0.092 4.092 8 C -0.115 4.115 9 C -0.118 4.118 10 C 0.306 3.694 11 O -0.474 6.474 12 N -0.350 5.350 13 C -0.018 4.018 14 C -0.177 4.177 15 C 0.171 3.829 16 O -0.386 6.386 17 C -0.579 4.579 18 H 0.073 0.927 19 C -0.158 4.158 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.225 1.225 23 H -0.224 1.224 24 H -0.138 1.138 25 C -0.007 4.007 26 C -0.093 4.093 27 C -0.231 4.231 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.232 0.768 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.818 -19.551 -20.393 28.391 hybrid contribution -0.790 0.830 0.818 1.408 sum -3.608 -18.720 -19.575 27.325 Atomic orbital electron populations 1.24122 0.95094 1.03687 0.96887 1.22701 0.96140 0.97369 1.03102 1.22030 0.87491 0.97676 0.92222 1.86048 1.42745 1.35808 1.59618 1.19163 0.91690 0.86492 0.95794 1.20582 0.96240 1.00558 1.00962 1.21051 0.99109 0.91797 0.97212 1.19440 0.98459 0.94996 0.98635 1.20639 1.00291 0.92179 0.98670 1.21244 0.83546 0.80523 0.84108 1.90690 1.26996 1.74577 1.55144 1.48816 1.27725 1.18990 1.39458 1.22630 0.84338 0.98546 0.96284 1.23268 0.97045 0.99242 0.98140 1.19823 0.90546 0.84107 0.88467 1.86448 1.48273 1.32931 1.70938 1.21562 0.96539 1.41559 0.98280 0.92665 1.25597 1.02330 0.93368 0.94487 1.70012 1.33878 1.40641 1.12228 0.86442 0.80620 0.76336 0.82375 1.22466 1.22397 1.13804 1.22137 0.97587 0.89735 0.91259 1.21055 0.93213 0.97670 0.97381 1.21389 1.03808 0.93973 1.03923 0.87672 0.85824 0.86029 0.91273 0.89825 0.84430 0.84159 0.84988 0.85080 0.86810 0.89369 0.90991 0.87558 0.76849 0.92363 0.94669 0.93633 0.84506 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 14.31 67.79 0.97 -0.73 16 2 C -0.18 -2.39 9.89 25.66 0.25 -2.14 16 3 C 0.08 1.30 5.15 71.24 0.37 1.67 16 4 O -0.33 -7.53 10.12 -92.47 -0.94 -8.46 16 5 C 0.11 2.78 6.69 22.51 0.15 2.93 16 6 C -0.16 -4.03 9.99 22.36 0.22 -3.81 16 7 C -0.07 -1.78 9.69 22.25 0.22 -1.56 16 8 C -0.11 -2.79 4.37 -19.85 -0.09 -2.88 16 9 C -0.08 -1.68 4.83 29.10 0.14 -1.54 16 10 C 0.51 17.60 7.84 87.66 0.69 18.28 16 11 O -0.59 -26.54 16.36 -3.03 -0.05 -26.59 16 12 N -0.62 -21.66 3.33 -811.77 -2.70 -24.36 16 13 C 0.10 2.56 6.68 86.85 0.58 3.14 16 14 C -0.14 -4.30 6.22 31.98 0.20 -4.10 16 15 C 0.21 8.98 0.68 -10.35 -0.01 8.97 16 16 O -0.58 -23.18 10.47 -148.98 -1.56 -24.74 16 17 C -0.54 -28.85 8.72 25.60 0.22 -28.63 16 18 H 0.06 3.17 8.03 -2.91 -0.02 3.15 16 19 C 0.04 2.49 5.47 84.65 0.46 2.95 16 20 N -0.93 -56.90 13.96 21.45 0.30 -56.60 16 21 Si 0.92 46.90 23.99 68.60 1.65 48.55 16 22 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 23 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 24 H -0.22 -10.50 5.40 99.48 0.54 -9.97 16 25 C 0.12 5.28 4.39 86.73 0.38 5.66 16 26 C -0.08 -1.75 9.69 22.26 0.22 -1.53 16 27 C -0.21 -4.75 9.04 22.37 0.20 -4.55 16 28 H 0.11 0.99 7.90 -2.91 -0.02 0.97 16 29 H 0.12 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.07 1.07 7.38 -2.39 -0.02 1.05 16 32 H 0.08 1.10 7.66 -2.38 -0.02 1.08 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.13 2.01 7.79 -2.39 -0.02 1.99 16 36 H 0.13 1.99 8.09 -2.38 -0.02 1.97 16 37 H 0.11 1.86 7.48 -2.39 -0.02 1.84 16 38 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 40 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.38 12.48 9.10 -74.06 -0.67 11.81 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.04 1.74 5.69 -2.39 -0.01 1.73 16 44 H 0.05 2.35 7.62 -2.39 -0.02 2.34 16 45 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 46 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 Total: -1.00 -78.77 377.46 2.02 -76.74 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.14 Total: 23.32 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.18 Total: -7.87 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -2.40 Total: -80.96 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -2.55 Total: -59.79 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.65 Total: 48.55 kcal Total: -78.77 2.02 -76.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.988 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds