Wall clock time and date at job start Tue Mar 31 2020 16:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47008 * 2 1 4 4 O 1.42903 * 109.47063 * 119.99734 * 2 1 3 5 5 C 1.42901 * 113.99958 * 150.00240 * 4 2 1 6 6 H 1.09000 * 109.52233 * 30.07814 * 5 4 2 7 7 C 1.53045 * 109.49499 * 270.00237 * 5 4 2 8 8 C 1.53036 * 109.53685 * 178.68484 * 7 5 4 9 9 C 1.53189 * 109.31568 * 61.36100 * 8 7 5 10 10 N 1.46929 * 108.77506 * 305.36705 * 9 8 7 11 11 S 1.65607 * 120.62893 * 233.58551 * 10 9 8 12 12 O 1.42102 * 104.27726 * 333.92797 * 11 10 9 13 13 O 1.42101 * 104.27469 * 206.06994 * 11 10 9 14 14 C 1.81392 * 104.45073 * 90.00013 * 11 10 9 15 15 C 1.52995 * 109.47271 * 186.12459 * 14 11 10 16 16 C 1.50702 * 115.55083 * 294.73564 * 15 14 11 17 17 H 1.08003 * 120.00094 * 99.53749 * 16 15 14 18 18 C 1.37878 * 119.99821 * 279.53158 * 16 15 14 19 19 N 1.31508 * 120.00307 * 5.79185 * 18 16 15 20 20 Si 1.86804 * 119.99847 * 185.78756 * 18 16 15 21 21 H 1.48498 * 109.47108 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47067 * 300.00562 * 20 18 16 23 23 H 1.48503 * 109.46860 * 60.00136 * 20 18 16 24 24 C 1.53006 * 117.51769 * 80.43615 * 15 14 11 25 25 C 1.53001 * 59.99891 * 107.48073 * 24 15 14 26 26 C 1.46919 * 118.74032 * 53.85937 * 10 9 8 27 27 H 1.09000 * 109.46869 * 300.00035 * 1 2 3 28 28 H 1.08995 * 109.47192 * 60.00447 * 1 2 3 29 29 H 1.09002 * 109.46894 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47130 * 239.99916 * 2 1 3 31 31 H 1.08996 * 109.47266 * 59.99495 * 3 2 1 32 32 H 1.08995 * 109.46927 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46779 * 299.99806 * 3 2 1 34 34 H 1.08995 * 109.46105 * 58.66312 * 7 5 4 35 35 H 1.08998 * 109.45537 * 298.69873 * 7 5 4 36 36 H 1.09004 * 109.49652 * 301.41116 * 8 7 5 37 37 H 1.09003 * 109.52776 * 181.33180 * 8 7 5 38 38 H 1.09001 * 109.58874 * 185.58006 * 9 8 7 39 39 H 1.09003 * 109.70633 * 65.22508 * 9 8 7 40 40 H 1.09006 * 109.47123 * 66.12186 * 14 11 10 41 41 H 1.08998 * 109.47377 * 306.12457 * 14 11 10 42 42 H 0.97001 * 119.99884 * 354.98993 * 19 18 16 43 43 H 1.08996 * 117.49488 * 214.97383 * 24 15 14 44 44 H 1.08997 * 117.49641 * 359.97438 * 24 15 14 45 45 H 1.08992 * 117.50311 * 252.50756 * 25 24 15 46 46 H 1.09001 * 117.49723 * 107.48747 * 25 24 15 47 47 H 1.09006 * 109.58856 * 65.92437 * 26 10 9 48 48 H 1.08994 * 109.58942 * 186.35211 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8544 -0.7828 0.2480 7 6 3.0362 -2.7593 0.5085 8 6 4.3852 -3.4468 0.2861 9 6 5.1528 -3.4973 1.6108 10 7 5.2518 -2.1350 2.1523 11 16 6.7228 -1.4957 2.5645 12 8 7.5256 -2.6290 2.8653 13 8 6.4180 -0.5287 3.5601 14 6 7.3056 -0.6870 1.0490 15 6 8.7352 -0.1833 1.2571 16 6 8.8970 0.9076 2.2841 17 1 9.2362 0.6654 3.2805 18 6 8.6120 2.2150 1.9517 19 7 8.0916 2.4965 0.7773 20 14 8.9651 3.5866 3.1698 21 1 8.5712 4.8895 2.5760 22 1 8.1888 3.3554 4.4143 23 1 10.4156 3.6052 3.4875 24 6 9.8699 -1.2010 1.1228 25 6 9.6559 -0.1459 0.0356 26 6 4.0203 -1.3529 2.3267 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.4777 -2.7440 -0.4273 35 1 2.4691 -3.3074 1.2608 36 1 4.9631 -2.8851 -0.4480 37 1 4.2216 -4.4609 -0.0785 38 1 6.1527 -3.8957 1.4389 39 1 4.6225 -4.1342 2.3188 40 1 6.6545 0.1547 0.8129 41 1 7.2884 -1.4016 0.2261 42 1 7.9755 1.7950 0.1175 43 1 10.7332 -1.0814 1.7773 44 1 9.5979 -2.2297 0.8865 45 1 9.2432 -0.4803 -0.9161 46 1 10.3785 0.6679 -0.0251 47 1 3.3972 -1.8179 3.0907 48 1 4.2727 -0.3361 2.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593624965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:05 Heat of formation + Delta-G solvation = -110.339663 kcal Electronic energy + Delta-G solvation = -28720.914298 eV Core-core repulsion = 24903.283129 eV Total energy + Delta-G solvation = -3817.631169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.39111 -37.21718 -37.10208 -36.42545 -35.18827 -32.99903 -32.05530 -32.02720 -29.76235 -28.32191 -27.31923 -25.04035 -24.53545 -23.10867 -21.44257 -21.35646 -20.66224 -19.66497 -18.44283 -17.39975 -16.92379 -16.69731 -15.94026 -15.50167 -15.20962 -15.03802 -14.44380 -14.20599 -13.97201 -13.79712 -13.74263 -13.48639 -13.37319 -13.16848 -12.79577 -12.58263 -12.34271 -12.29202 -11.89615 -11.85408 -11.62935 -11.44103 -11.36380 -11.30461 -11.19115 -11.16801 -10.92146 -10.78503 -10.74675 -10.65347 -10.62875 -10.37272 -10.09516 -9.75761 -9.54137 -8.91548 -8.68219 -8.54534 -8.30035 -6.47435 -4.26294 0.89413 3.08913 3.43923 3.48571 3.63027 3.64981 4.45571 4.47752 4.58992 4.69158 4.74412 4.82158 4.83441 4.93991 4.96005 5.04552 5.07788 5.14064 5.19959 5.22861 5.37941 5.47325 5.50090 5.61197 5.67874 5.69506 5.72309 5.74229 5.77311 5.80406 5.90428 5.91937 6.01204 6.05371 6.12810 6.14225 6.20341 6.26992 6.32816 6.50628 6.68305 6.74961 6.99366 7.13732 7.22537 8.01477 8.31838 8.74467 9.52325 10.91943 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011511 B = 0.004924 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.954907 B = 5685.154184 C = 6992.936081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 C -0.180 4.180 4 O -0.374 6.374 5 C 0.074 3.926 6 H 0.066 0.934 7 C -0.136 4.136 8 C -0.135 4.135 9 C 0.118 3.882 10 N -1.007 6.007 11 S 2.613 3.387 12 O -0.967 6.967 13 O -0.940 6.940 14 C -0.567 4.567 15 C 0.022 3.978 16 C -0.588 4.588 17 H 0.062 0.938 18 C 0.040 3.960 19 N -0.898 5.898 20 Si 1.061 2.939 21 H -0.281 1.281 22 H -0.280 1.280 23 H -0.285 1.285 24 C -0.191 4.191 25 C -0.166 4.166 26 C 0.128 3.872 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.274 0.726 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 -9.090 -4.968 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 C -0.237 4.237 4 O -0.292 6.292 5 C 0.015 3.985 6 H 0.085 0.915 7 C -0.174 4.174 8 C -0.174 4.174 9 C -0.007 4.007 10 N -0.844 5.844 11 S 2.710 3.290 12 O -0.958 6.958 13 O -0.930 6.930 14 C -0.700 4.700 15 C 0.020 3.980 16 C -0.625 4.625 17 H 0.080 0.920 18 C -0.167 4.167 19 N -0.531 5.531 20 Si 0.888 3.112 21 H -0.206 1.206 22 H -0.206 1.206 23 H -0.211 1.211 24 C -0.228 4.228 25 C -0.205 4.205 26 C 0.002 3.998 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.627 -7.533 -3.674 15.155 hybrid contribution 0.144 -1.500 -1.442 2.086 sum -12.483 -9.033 -5.116 16.235 Atomic orbital electron populations 1.21851 0.93735 1.02422 1.02494 1.22117 0.94789 0.92641 0.88113 1.22345 1.02292 0.96462 1.02603 1.87911 1.36102 1.69584 1.35640 1.22587 0.85149 0.92611 0.98173 0.91547 1.21974 0.97458 0.96264 1.01666 1.21945 0.96275 1.01248 0.97900 1.21391 1.01871 0.82949 0.94523 1.58193 1.22450 1.22740 1.81018 1.05104 0.72107 0.74145 0.77624 1.93492 1.68058 1.50600 1.83603 1.93550 1.82127 1.62493 1.54868 1.30172 1.09777 1.11286 1.18737 1.18563 0.83445 0.97431 0.98609 1.21387 1.51590 0.92145 0.97418 0.92017 1.25805 0.92147 0.99131 0.99649 1.70774 1.38151 1.38054 1.06164 0.83658 0.76666 0.75555 0.75282 1.20622 1.20623 1.21129 1.23032 1.02392 0.93830 1.03588 1.22811 1.04592 1.00915 0.92188 1.21309 0.85461 0.97374 0.95693 0.91723 0.91411 0.92208 0.92373 0.91548 0.91931 0.91756 0.91820 0.90904 0.91382 0.90434 0.89060 0.91127 0.85603 0.88268 0.91513 0.89238 0.90473 0.91265 0.89334 0.90426 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.56 37.16 0.36 -0.94 16 2 C 0.08 0.88 3.13 -26.73 -0.08 0.79 16 3 C -0.18 -2.05 9.52 37.16 0.35 -1.69 16 4 O -0.37 -4.84 9.64 -35.23 -0.34 -5.18 16 5 C 0.07 0.95 2.56 -26.38 -0.07 0.88 16 6 H 0.07 0.87 7.63 -51.93 -0.40 0.47 16 7 C -0.14 -1.42 5.50 -26.69 -0.15 -1.57 16 8 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 9 C 0.12 1.48 6.31 -3.71 -0.02 1.46 16 10 N -1.01 -15.83 3.21 -113.28 -0.36 -16.20 16 11 S 2.61 53.74 5.15 -107.50 -0.55 53.18 16 12 O -0.97 -21.19 16.72 -57.54 -0.96 -22.15 16 13 O -0.94 -22.85 16.38 -57.54 -0.94 -23.80 16 14 C -0.57 -11.77 5.89 37.16 0.22 -11.55 16 15 C 0.02 0.53 0.85 -155.66 -0.13 0.40 16 16 C -0.59 -16.22 8.17 -34.44 -0.28 -16.50 16 17 H 0.06 1.76 7.82 -52.48 -0.41 1.34 16 18 C 0.04 1.10 5.42 -17.82 -0.10 1.01 16 19 N -0.90 -25.52 13.61 55.43 0.75 -24.76 16 20 Si 1.06 25.18 29.91 -169.99 -5.08 20.10 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.19 -4.14 9.96 -26.73 -0.27 -4.41 16 25 C -0.17 -3.66 9.00 -26.73 -0.24 -3.90 16 26 C 0.13 1.90 6.00 -3.49 -0.02 1.88 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.58 7.62 -51.93 -0.40 0.18 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.81 7.97 -51.93 -0.41 0.40 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 2.71 7.60 -51.92 -0.39 2.32 16 41 H 0.10 1.70 8.09 -51.92 -0.42 1.28 16 42 H 0.27 7.57 6.07 -40.82 -0.25 7.33 16 43 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.10 1.66 7.09 -51.93 -0.37 1.29 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -32.81 392.82 -10.71 -43.52 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.54 Total: 5.04 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: -0.59 Total: -35.67 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.39 Total: -40.96 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.24 Total: -51.13 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Atomic # 16 Polarization: 53.74 SS G_CDS: -0.55 Total: 53.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.81 -10.71 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593624965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.821 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds