Wall clock time and date at job start Tue Mar 31 2020 16:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47008 * 2 1 4 4 O 1.42903 * 109.47063 * 119.99734 * 2 1 3 5 5 C 1.42901 * 113.99958 * 150.00240 * 4 2 1 6 6 H 1.09000 * 109.52233 * 30.07814 * 5 4 2 7 7 C 1.53045 * 109.49499 * 270.00237 * 5 4 2 8 8 C 1.53036 * 109.53685 * 178.68484 * 7 5 4 9 9 C 1.53189 * 109.31568 * 61.36100 * 8 7 5 10 10 N 1.46929 * 108.77506 * 305.36705 * 9 8 7 11 11 S 1.65607 * 120.62893 * 233.58551 * 10 9 8 12 12 O 1.42102 * 104.27726 * 333.92797 * 11 10 9 13 13 O 1.42101 * 104.27469 * 206.06994 * 11 10 9 14 14 C 1.81392 * 104.45073 * 90.00013 * 11 10 9 15 15 C 1.52995 * 109.47271 * 186.12459 * 14 11 10 16 16 C 1.50702 * 115.55083 * 294.73564 * 15 14 11 17 17 H 1.08003 * 120.00094 * 99.53749 * 16 15 14 18 18 C 1.37878 * 119.99821 * 279.53158 * 16 15 14 19 19 N 1.31508 * 120.00307 * 5.79185 * 18 16 15 20 20 Si 1.86804 * 119.99847 * 185.78756 * 18 16 15 21 21 H 1.48498 * 109.47108 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47067 * 300.00562 * 20 18 16 23 23 H 1.48503 * 109.46860 * 60.00136 * 20 18 16 24 24 C 1.53006 * 117.51769 * 80.43615 * 15 14 11 25 25 C 1.53001 * 59.99891 * 107.48073 * 24 15 14 26 26 C 1.46919 * 118.74032 * 53.85937 * 10 9 8 27 27 H 1.09000 * 109.46869 * 300.00035 * 1 2 3 28 28 H 1.08995 * 109.47192 * 60.00447 * 1 2 3 29 29 H 1.09002 * 109.46894 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47130 * 239.99916 * 2 1 3 31 31 H 1.08996 * 109.47266 * 59.99495 * 3 2 1 32 32 H 1.08995 * 109.46927 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46779 * 299.99806 * 3 2 1 34 34 H 1.08995 * 109.46105 * 58.66312 * 7 5 4 35 35 H 1.08998 * 109.45537 * 298.69873 * 7 5 4 36 36 H 1.09004 * 109.49652 * 301.41116 * 8 7 5 37 37 H 1.09003 * 109.52776 * 181.33180 * 8 7 5 38 38 H 1.09001 * 109.58874 * 185.58006 * 9 8 7 39 39 H 1.09003 * 109.70633 * 65.22508 * 9 8 7 40 40 H 1.09006 * 109.47123 * 66.12186 * 14 11 10 41 41 H 1.08998 * 109.47377 * 306.12457 * 14 11 10 42 42 H 0.97001 * 119.99884 * 354.98993 * 19 18 16 43 43 H 1.08996 * 117.49488 * 214.97383 * 24 15 14 44 44 H 1.08997 * 117.49641 * 359.97438 * 24 15 14 45 45 H 1.08992 * 117.50311 * 252.50756 * 25 24 15 46 46 H 1.09001 * 117.49723 * 107.48747 * 25 24 15 47 47 H 1.09006 * 109.58856 * 65.92437 * 26 10 9 48 48 H 1.08994 * 109.58942 * 186.35211 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8544 -0.7828 0.2480 7 6 3.0362 -2.7593 0.5085 8 6 4.3852 -3.4468 0.2861 9 6 5.1528 -3.4973 1.6108 10 7 5.2518 -2.1350 2.1523 11 16 6.7228 -1.4957 2.5645 12 8 7.5256 -2.6290 2.8653 13 8 6.4180 -0.5287 3.5601 14 6 7.3056 -0.6870 1.0490 15 6 8.7352 -0.1833 1.2571 16 6 8.8970 0.9076 2.2841 17 1 9.2362 0.6654 3.2805 18 6 8.6120 2.2150 1.9517 19 7 8.0916 2.4965 0.7773 20 14 8.9651 3.5866 3.1698 21 1 8.5712 4.8895 2.5760 22 1 8.1888 3.3554 4.4143 23 1 10.4156 3.6052 3.4875 24 6 9.8699 -1.2010 1.1228 25 6 9.6559 -0.1459 0.0356 26 6 4.0203 -1.3529 2.3267 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 2.4777 -2.7440 -0.4273 35 1 2.4691 -3.3074 1.2608 36 1 4.9631 -2.8851 -0.4480 37 1 4.2216 -4.4609 -0.0785 38 1 6.1527 -3.8957 1.4389 39 1 4.6225 -4.1342 2.3188 40 1 6.6545 0.1547 0.8129 41 1 7.2884 -1.4016 0.2261 42 1 7.9755 1.7950 0.1175 43 1 10.7332 -1.0814 1.7773 44 1 9.5979 -2.2297 0.8865 45 1 9.2432 -0.4803 -0.9161 46 1 10.3785 0.6679 -0.0251 47 1 3.3972 -1.8179 3.0907 48 1 4.2727 -0.3361 2.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593624965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:04 Heat of formation + Delta-G solvation = -131.351506 kcal Electronic energy + Delta-G solvation = -28721.825440 eV Core-core repulsion = 24903.283129 eV Total energy + Delta-G solvation = -3818.542311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37129 -38.92772 -38.25944 -38.10353 -36.92246 -34.09671 -33.92092 -33.03617 -30.78188 -30.01144 -28.11923 -27.09701 -25.64461 -24.08776 -23.18829 -22.27078 -21.93354 -21.26965 -19.85027 -18.86205 -18.78071 -17.74152 -17.28199 -17.17218 -16.36578 -15.95663 -15.92213 -15.67517 -15.62000 -15.06162 -14.95434 -14.87469 -14.56929 -14.48167 -14.16837 -13.85298 -13.68143 -13.19561 -13.17484 -13.14046 -13.05189 -13.02031 -12.87343 -12.70013 -12.64838 -12.43141 -12.29169 -12.20415 -12.03640 -11.96505 -11.91304 -11.72376 -11.53042 -11.46976 -10.63272 -10.58601 -10.56503 -10.28513 -9.90387 -8.63841 -6.41887 -0.70836 1.49763 1.56716 1.71127 1.75780 2.51475 2.63368 2.86035 3.08895 3.14325 3.26479 3.52889 3.75331 3.77839 3.93233 3.95950 4.04237 4.09959 4.13869 4.19427 4.22952 4.28787 4.31383 4.37462 4.47349 4.58068 4.67380 4.73066 4.74868 4.79286 4.82642 4.86446 4.93131 4.94985 4.97905 4.99522 5.08842 5.17099 5.21491 5.27562 5.32030 5.36119 5.38777 5.55770 5.99179 6.13252 6.30618 6.61906 7.40239 8.77557 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011511 B = 0.004924 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.954907 B = 5685.154184 C = 6992.936081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.389 6.389 5 C 0.077 3.923 6 H 0.059 0.941 7 C -0.129 4.129 8 C -0.129 4.129 9 C 0.105 3.895 10 N -0.998 5.998 11 S 2.623 3.377 12 O -0.983 6.983 13 O -0.990 6.990 14 C -0.561 4.561 15 C -0.015 4.015 16 C -0.603 4.603 17 H 0.039 0.961 18 C -0.001 4.001 19 N -0.916 5.916 20 Si 1.090 2.910 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.180 4.180 25 C -0.157 4.157 26 C 0.123 3.877 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.271 0.729 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.019 -10.953 -6.747 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 C -0.238 4.238 4 O -0.308 6.308 5 C 0.017 3.983 6 H 0.077 0.923 7 C -0.167 4.167 8 C -0.168 4.168 9 C -0.019 4.019 10 N -0.837 5.837 11 S 2.721 3.279 12 O -0.974 6.974 13 O -0.980 6.980 14 C -0.693 4.693 15 C -0.017 4.017 16 C -0.640 4.640 17 H 0.057 0.943 18 C -0.204 4.204 19 N -0.551 5.551 20 Si 0.913 3.087 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.217 4.217 25 C -0.196 4.196 26 C -0.003 4.003 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.908 -9.411 -5.457 17.657 hybrid contribution 0.515 -0.972 -0.875 1.406 sum -13.393 -10.383 -6.332 18.091 Atomic orbital electron populations 1.21841 0.91940 1.03121 1.03102 1.22319 0.96141 0.91817 0.87879 1.22372 1.00716 0.97581 1.03151 1.87891 1.35867 1.69947 1.37115 1.22529 0.84974 0.94466 0.96330 0.92294 1.21942 0.98019 0.94134 1.02604 1.21961 0.95482 1.03132 0.96226 1.21795 1.02805 0.80900 0.96362 1.57769 1.20790 1.24017 1.81169 1.04472 0.72853 0.73339 0.77258 1.93456 1.69299 1.50652 1.83974 1.93484 1.83175 1.64166 1.57152 1.30024 1.07369 1.11672 1.20235 1.18661 0.85648 0.98147 0.99269 1.21586 1.51276 0.93672 0.97444 0.94301 1.26809 0.91898 1.01171 1.00509 1.70842 1.39599 1.38031 1.06649 0.83299 0.77629 0.73994 0.73806 1.19931 1.20786 1.19160 1.23103 1.00968 0.94809 1.02846 1.22783 1.03334 1.00476 0.92979 1.21387 0.85283 0.95904 0.97735 0.92463 0.89479 0.91436 0.91048 0.92472 0.94321 0.89784 0.89963 0.90309 0.91341 0.87165 0.88975 0.89428 0.86977 0.84398 0.91860 0.89874 0.87769 0.88417 0.91222 0.89376 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.56 71.98 0.69 -1.51 16 2 C 0.08 1.52 3.13 30.60 0.10 1.62 16 3 C -0.18 -4.07 9.52 71.98 0.69 -3.38 16 4 O -0.39 -9.70 9.64 -148.98 -1.44 -11.13 16 5 C 0.08 1.87 2.56 30.82 0.08 1.94 16 6 H 0.06 1.50 7.63 -2.39 -0.02 1.49 16 7 C -0.13 -2.28 5.50 30.62 0.17 -2.11 16 8 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 9 C 0.11 2.36 6.31 86.36 0.55 2.91 16 10 N -1.00 -30.60 3.21 -512.30 -1.65 -32.25 16 11 S 2.62 108.66 5.15 -56.49 -0.29 108.37 16 12 O -0.98 -42.66 16.72 -127.65 -2.13 -44.79 16 13 O -0.99 -50.18 16.38 -127.65 -2.09 -52.27 16 14 C -0.56 -23.05 5.89 71.98 0.42 -22.62 16 15 C -0.02 -0.72 0.85 -52.93 -0.04 -0.77 16 16 C -0.60 -34.07 8.17 25.60 0.21 -33.86 16 17 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 18 C 0.00 -0.07 5.42 84.66 0.46 0.39 16 19 N -0.92 -52.93 13.61 21.45 0.29 -52.64 16 20 Si 1.09 51.61 29.91 68.60 2.05 53.66 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C -0.18 -7.59 9.96 30.60 0.30 -7.28 16 25 C -0.16 -6.75 9.00 30.59 0.28 -6.47 16 26 C 0.12 3.66 6.00 86.51 0.52 4.18 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.25 7.62 -2.39 -0.02 1.23 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.03 7.97 -2.39 -0.02 1.01 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.19 7.96 -2.39 -0.02 1.17 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 2.08 7.10 -2.39 -0.02 2.06 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 4.93 7.60 -2.39 -0.02 4.91 16 41 H 0.14 4.43 8.09 -2.39 -0.02 4.41 16 42 H 0.27 15.20 6.07 -92.71 -0.56 14.63 16 43 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 45 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 46 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 48 H 0.07 2.50 7.09 -2.39 -0.02 2.48 16 Total: -1.00 -72.73 392.82 0.46 -72.28 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 1.12 Total: 27.66 kcal Atomic # 6 Polarization: -73.49 SS G_CDS: 4.59 Total: -68.90 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.35 Total: -84.88 kcal Atomic # 8 Polarization: -102.53 SS G_CDS: -5.66 Total: -108.19 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Atomic # 16 Polarization: 108.66 SS G_CDS: -0.29 Total: 108.37 kcal Total: -72.73 0.46 -72.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593624965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.072 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds