Wall clock time and date at job start Tue Mar 31 2020 16:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 O 1.42898 * 109.47158 * 120.00515 * 2 1 3 5 5 C 1.42897 * 114.00448 * 89.99436 * 4 2 1 6 6 H 1.08999 * 109.52164 * 330.08616 * 5 4 2 7 7 C 1.53043 * 109.49562 * 90.16148 * 5 4 2 8 8 C 1.53035 * 109.53916 * 181.31714 * 7 5 4 9 9 C 1.53620 * 109.24635 * 298.51166 * 8 7 5 10 10 N 1.46929 * 108.53998 * 54.85126 * 9 8 7 11 11 S 1.65600 * 120.62707 * 126.37005 * 10 9 8 12 12 O 1.42103 * 104.27621 * 153.64953 * 11 10 9 13 13 O 1.42099 * 104.27838 * 25.79566 * 11 10 9 14 14 C 1.81402 * 104.45104 * 269.72214 * 11 10 9 15 15 C 1.53008 * 109.46930 * 185.94873 * 14 11 10 16 16 C 1.50697 * 115.54805 * 299.60648 * 15 14 11 17 17 H 1.07998 * 119.99660 * 93.71416 * 16 15 14 18 18 C 1.37874 * 120.00250 * 273.70875 * 16 15 14 19 19 N 1.31516 * 120.00304 * 181.13829 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 1.14019 * 18 16 15 21 21 H 1.48502 * 109.47510 * 274.89216 * 20 18 16 22 22 H 1.48500 * 109.47471 * 34.89559 * 20 18 16 23 23 H 1.48498 * 109.47101 * 154.89301 * 20 18 16 24 24 C 1.52995 * 117.51707 * 85.31330 * 15 14 11 25 25 C 1.52994 * 117.49385 * 153.94153 * 15 14 11 26 26 C 1.46918 * 118.74364 * 306.09882 * 10 9 8 27 27 H 1.09000 * 109.46876 * 59.99465 * 1 2 3 28 28 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46956 * 299.99710 * 1 2 3 30 30 H 1.08997 * 109.46624 * 240.00231 * 2 1 3 31 31 H 1.08996 * 109.47033 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47080 * 300.00540 * 3 2 1 33 33 H 1.09005 * 109.46943 * 60.00282 * 3 2 1 34 34 H 1.09006 * 109.45833 * 301.33944 * 7 5 4 35 35 H 1.09000 * 109.46311 * 61.31022 * 7 5 4 36 36 H 1.09005 * 109.49365 * 58.59068 * 8 7 5 37 37 H 1.09000 * 109.49826 * 178.64639 * 8 7 5 38 38 H 1.08994 * 109.73970 * 295.12307 * 9 8 7 39 39 H 1.08997 * 109.66863 * 174.54946 * 9 8 7 40 40 H 1.08998 * 109.46827 * 65.94997 * 14 11 10 41 41 H 1.09001 * 109.46847 * 305.94762 * 14 11 10 42 42 H 0.97003 * 119.99923 * 179.97438 * 19 18 16 43 43 H 1.09000 * 117.49514 * 214.96642 * 24 15 14 44 44 H 1.09000 * 117.50437 * 359.97438 * 24 15 14 45 45 H 1.09000 * 117.50314 * 359.97056 * 25 15 14 46 46 H 1.09000 * 117.50148 * 144.99911 * 25 15 14 47 47 H 1.08998 * 109.59324 * 173.64632 * 26 10 9 48 48 H 1.09000 * 109.58791 * 294.07235 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9886 6 1 1.4952 -2.4518 0.2458 7 6 3.6307 -2.3402 0.5122 8 6 3.8292 -3.8412 0.2896 9 6 3.6193 -4.5824 1.6187 10 7 2.2985 -4.2212 2.1515 11 16 1.2039 -5.3947 2.5602 12 8 0.3916 -4.7854 3.5543 13 8 2.0035 -6.5299 2.8622 14 6 0.2507 -5.6732 1.0421 15 6 -0.8998 -6.6393 1.3323 16 6 -0.4936 -8.0041 1.8255 17 1 -0.4425 -8.2018 2.8860 18 6 -0.1874 -9.0004 0.9230 19 7 0.1454 -10.1978 1.3531 20 14 -0.2451 -8.6493 -0.9108 21 1 -1.6339 -8.8275 -1.4056 22 1 0.1945 -7.2532 -1.1617 23 1 0.6583 -9.5882 -1.6232 24 6 -2.1986 -6.0468 1.8825 25 6 -2.1388 -6.5507 0.4392 26 6 1.9695 -2.7993 2.3204 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.8052 -1.8082 -0.4230 35 1 4.3347 -1.9890 1.2666 36 1 3.1090 -4.1982 -0.4466 37 1 4.8408 -4.0246 -0.0726 38 1 4.3922 -4.2900 2.3294 39 1 3.6634 -5.6583 1.4498 40 1 0.9004 -6.1008 0.2785 41 1 -0.1522 -4.7246 0.6870 42 1 0.3604 -10.8988 0.7180 43 1 -2.7594 -6.6443 2.6014 44 1 -2.2337 -4.9686 2.0384 45 1 -2.1346 -5.8039 -0.3548 46 1 -2.6603 -7.4796 0.2084 47 1 0.9248 -2.6982 2.6145 48 1 2.6107 -2.3644 3.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593624966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:09 Heat of formation + Delta-G solvation = -99.031353 kcal Electronic energy + Delta-G solvation = -28663.452551 eV Core-core repulsion = 24846.311747 eV Total energy + Delta-G solvation = -3817.140804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.48801 -37.27992 -37.14277 -36.41871 -35.16501 -33.11282 -32.19371 -32.07713 -29.82578 -28.54741 -27.48423 -25.58564 -24.58465 -23.14715 -21.74668 -21.48500 -20.66314 -19.29116 -18.43585 -17.47222 -16.82649 -16.66043 -15.97421 -15.44227 -15.25184 -15.13025 -14.95639 -14.37492 -14.10082 -13.96531 -13.87460 -13.52032 -13.34307 -13.03433 -12.87769 -12.67319 -12.49944 -12.44895 -12.37515 -11.99384 -11.62233 -11.51648 -11.40224 -11.35570 -11.22426 -11.19693 -10.94703 -10.93476 -10.75239 -10.73182 -10.65946 -10.40280 -10.14667 -9.78439 -9.63966 -9.19948 -8.93115 -8.69651 -8.45119 -6.18819 -4.27670 0.87235 3.04332 3.19402 3.28426 3.30204 3.55527 4.31759 4.44412 4.52135 4.60067 4.67734 4.74184 4.79563 4.83143 4.84918 4.92309 4.98784 5.05147 5.09348 5.17616 5.32746 5.35160 5.40890 5.49475 5.54600 5.57321 5.64142 5.72819 5.74682 5.79433 5.82088 5.86297 5.91523 5.94437 5.97839 5.99749 6.11958 6.17593 6.24044 6.39187 6.59939 6.69966 6.84640 7.03063 7.10798 7.56350 8.34328 8.85529 9.41765 10.92705 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.004296 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.909545 B = 6516.277346 C = 6898.128197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.374 6.374 5 C 0.074 3.926 6 H 0.064 0.936 7 C -0.136 4.136 8 C -0.136 4.136 9 C 0.116 3.884 10 N -1.008 6.008 11 S 2.614 3.386 12 O -0.962 6.962 13 O -0.931 6.931 14 C -0.579 4.579 15 C 0.002 3.998 16 C -0.513 4.513 17 H 0.087 0.913 18 C 0.091 3.909 19 N -0.880 5.880 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.291 1.291 24 C -0.175 4.175 25 C -0.187 4.187 26 C 0.128 3.872 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.268 0.732 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 20.039 -6.232 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.292 6.292 5 C 0.014 3.986 6 H 0.082 0.918 7 C -0.174 4.174 8 C -0.175 4.175 9 C -0.009 4.009 10 N -0.845 5.845 11 S 2.711 3.289 12 O -0.953 6.953 13 O -0.922 6.922 14 C -0.710 4.710 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.105 0.895 18 C -0.114 4.114 19 N -0.515 5.515 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.185 1.185 23 H -0.217 1.217 24 C -0.212 4.212 25 C -0.225 4.225 26 C 0.002 3.998 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.584 19.536 -5.226 20.980 hybrid contribution -0.211 0.132 -2.184 2.198 sum 5.373 19.668 -7.410 21.694 Atomic orbital electron populations 1.22345 0.95937 1.02676 1.02634 1.22115 0.93659 0.93713 0.88265 1.21852 1.01683 0.94558 1.02469 1.87919 1.86240 1.19555 1.35520 1.22527 0.96428 0.81447 0.98187 0.91753 1.21976 0.97291 0.96432 1.01667 1.22029 1.02598 0.94821 0.98020 1.21528 0.84231 1.00731 0.94398 1.58254 1.27352 1.17505 1.81362 1.05112 0.74060 0.72626 0.77133 1.93505 1.70043 1.76548 1.55201 1.93588 1.66969 1.48996 1.82599 1.30365 1.12931 1.06629 1.21073 1.18845 0.84293 0.95300 1.01676 1.20344 1.47947 0.91139 0.95568 0.89532 1.24939 0.93149 0.94561 0.98784 1.69885 1.44123 1.02356 1.35155 0.86936 0.78375 0.78660 0.85681 1.19870 1.18505 1.21736 1.22973 1.02723 0.99060 0.96418 1.22991 1.04437 1.02081 0.93028 1.21191 1.02785 0.80087 0.95783 0.91730 0.92286 0.91555 0.92282 0.92074 0.91412 0.91723 0.91862 0.90832 0.91319 0.90326 0.90976 0.88443 0.85668 0.87874 0.92218 0.88618 0.90194 0.90779 0.88847 0.88647 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.52 37.16 0.35 -1.18 16 2 C 0.08 0.72 3.13 -26.73 -0.08 0.64 16 3 C -0.15 -1.09 9.56 37.16 0.36 -0.73 16 4 O -0.37 -4.18 9.64 -35.23 -0.34 -4.52 16 5 C 0.07 0.83 2.55 -26.61 -0.07 0.76 16 6 H 0.06 0.70 7.63 -51.93 -0.40 0.31 16 7 C -0.14 -1.33 5.50 -26.69 -0.15 -1.48 16 8 C -0.14 -1.38 6.10 -26.39 -0.16 -1.54 16 9 C 0.12 1.50 6.34 -3.49 -0.02 1.48 16 10 N -1.01 -15.21 3.21 -113.28 -0.36 -15.57 16 11 S 2.61 52.37 5.06 -107.50 -0.54 51.83 16 12 O -0.96 -20.90 16.72 -57.54 -0.96 -21.87 16 13 O -0.93 -22.30 16.20 -57.54 -0.93 -23.23 16 14 C -0.58 -11.28 5.81 37.16 0.22 -11.06 16 15 C 0.00 0.04 0.87 -155.66 -0.14 -0.10 16 16 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 18 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 19 N -0.88 -26.57 13.96 55.43 0.77 -25.80 16 20 Si 0.88 20.87 24.92 -169.99 -4.24 16.63 16 21 H -0.27 -6.32 7.06 56.52 0.40 -5.92 16 22 H -0.26 -5.68 5.68 56.52 0.32 -5.36 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.17 -3.57 9.95 -26.74 -0.27 -3.83 16 25 C -0.19 -3.83 7.67 -26.74 -0.21 -4.04 16 26 C 0.13 1.69 5.96 -3.71 -0.02 1.67 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.55 7.97 -51.93 -0.41 0.14 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.49 7.63 -51.93 -0.40 0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.55 7.97 -51.93 -0.41 0.14 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.36 7.09 -51.93 -0.37 0.99 16 40 H 0.13 2.40 6.35 -51.92 -0.33 2.07 16 41 H 0.10 1.62 8.11 -51.92 -0.42 1.20 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.09 2.00 7.28 -51.93 -0.38 1.62 16 47 H 0.10 1.31 7.10 -51.93 -0.37 0.94 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -33.65 385.83 -9.99 -43.64 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.62 Total: 4.60 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -0.57 Total: -31.54 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.41 Total: -41.37 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -2.23 Total: -49.62 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.24 Total: 16.63 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.54 Total: 51.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.65 -9.99 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593624966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.391 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds