Wall clock time and date at job start Tue Mar 31 2020 16:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47172 * 2 1 4 4 O 1.42898 * 109.47158 * 120.00515 * 2 1 3 5 5 C 1.42897 * 114.00448 * 89.99436 * 4 2 1 6 6 H 1.08999 * 109.52164 * 330.08616 * 5 4 2 7 7 C 1.53043 * 109.49562 * 90.16148 * 5 4 2 8 8 C 1.53035 * 109.53916 * 181.31714 * 7 5 4 9 9 C 1.53620 * 109.24635 * 298.51166 * 8 7 5 10 10 N 1.46929 * 108.53998 * 54.85126 * 9 8 7 11 11 S 1.65600 * 120.62707 * 126.37005 * 10 9 8 12 12 O 1.42103 * 104.27621 * 153.64953 * 11 10 9 13 13 O 1.42099 * 104.27838 * 25.79566 * 11 10 9 14 14 C 1.81402 * 104.45104 * 269.72214 * 11 10 9 15 15 C 1.53008 * 109.46930 * 185.94873 * 14 11 10 16 16 C 1.50697 * 115.54805 * 299.60648 * 15 14 11 17 17 H 1.07998 * 119.99660 * 93.71416 * 16 15 14 18 18 C 1.37874 * 120.00250 * 273.70875 * 16 15 14 19 19 N 1.31516 * 120.00304 * 181.13829 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 1.14019 * 18 16 15 21 21 H 1.48502 * 109.47510 * 274.89216 * 20 18 16 22 22 H 1.48500 * 109.47471 * 34.89559 * 20 18 16 23 23 H 1.48498 * 109.47101 * 154.89301 * 20 18 16 24 24 C 1.52995 * 117.51707 * 85.31330 * 15 14 11 25 25 C 1.52994 * 117.49385 * 153.94153 * 15 14 11 26 26 C 1.46918 * 118.74364 * 306.09882 * 10 9 8 27 27 H 1.09000 * 109.46876 * 59.99465 * 1 2 3 28 28 H 1.08999 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46956 * 299.99710 * 1 2 3 30 30 H 1.08997 * 109.46624 * 240.00231 * 2 1 3 31 31 H 1.08996 * 109.47033 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47080 * 300.00540 * 3 2 1 33 33 H 1.09005 * 109.46943 * 60.00282 * 3 2 1 34 34 H 1.09006 * 109.45833 * 301.33944 * 7 5 4 35 35 H 1.09000 * 109.46311 * 61.31022 * 7 5 4 36 36 H 1.09005 * 109.49365 * 58.59068 * 8 7 5 37 37 H 1.09000 * 109.49826 * 178.64639 * 8 7 5 38 38 H 1.08994 * 109.73970 * 295.12307 * 9 8 7 39 39 H 1.08997 * 109.66863 * 174.54946 * 9 8 7 40 40 H 1.08998 * 109.46827 * 65.94997 * 14 11 10 41 41 H 1.09001 * 109.46847 * 305.94762 * 14 11 10 42 42 H 0.97003 * 119.99923 * 179.97438 * 19 18 16 43 43 H 1.09000 * 117.49514 * 214.96642 * 24 15 14 44 44 H 1.09000 * 117.50437 * 359.97438 * 24 15 14 45 45 H 1.09000 * 117.50314 * 359.97056 * 25 15 14 46 46 H 1.09000 * 117.50148 * 144.99911 * 25 15 14 47 47 H 1.08998 * 109.59324 * 173.64632 * 26 10 9 48 48 H 1.09000 * 109.58791 * 294.07235 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9886 6 1 1.4952 -2.4518 0.2458 7 6 3.6307 -2.3402 0.5122 8 6 3.8292 -3.8412 0.2896 9 6 3.6193 -4.5824 1.6187 10 7 2.2985 -4.2212 2.1515 11 16 1.2039 -5.3947 2.5602 12 8 0.3916 -4.7854 3.5543 13 8 2.0035 -6.5299 2.8622 14 6 0.2507 -5.6732 1.0421 15 6 -0.8998 -6.6393 1.3323 16 6 -0.4936 -8.0041 1.8255 17 1 -0.4425 -8.2018 2.8860 18 6 -0.1874 -9.0004 0.9230 19 7 0.1454 -10.1978 1.3531 20 14 -0.2451 -8.6493 -0.9108 21 1 -1.6339 -8.8275 -1.4056 22 1 0.1945 -7.2532 -1.1617 23 1 0.6583 -9.5882 -1.6232 24 6 -2.1986 -6.0468 1.8825 25 6 -2.1388 -6.5507 0.4392 26 6 1.9695 -2.7993 2.3204 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.8052 -1.8082 -0.4230 35 1 4.3347 -1.9890 1.2666 36 1 3.1090 -4.1982 -0.4466 37 1 4.8408 -4.0246 -0.0726 38 1 4.3922 -4.2900 2.3294 39 1 3.6634 -5.6583 1.4498 40 1 0.9004 -6.1008 0.2785 41 1 -0.1522 -4.7246 0.6870 42 1 0.3604 -10.8988 0.7180 43 1 -2.7594 -6.6443 2.6014 44 1 -2.2337 -4.9686 2.0384 45 1 -2.1346 -5.8039 -0.3548 46 1 -2.6603 -7.4796 0.2084 47 1 0.9248 -2.6982 2.6145 48 1 2.6107 -2.3644 3.0871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593624966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:08 Heat of formation + Delta-G solvation = -123.018750 kcal Electronic energy + Delta-G solvation = -28664.492722 eV Core-core repulsion = 24846.311747 eV Total energy + Delta-G solvation = -3818.180976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.32914 -38.87559 -38.18466 -38.05998 -36.84775 -34.31409 -33.86154 -32.99030 -30.72637 -30.14152 -28.05728 -27.64944 -25.59798 -24.04029 -23.36727 -22.18630 -21.71798 -20.96480 -19.79530 -18.86971 -18.48972 -17.68692 -17.30591 -17.01105 -16.77427 -16.25487 -15.88660 -15.63711 -15.47259 -14.99523 -14.84987 -14.81943 -14.58851 -14.44762 -14.15871 -14.00845 -13.79170 -13.22090 -13.11404 -13.07657 -13.01113 -12.94133 -12.86281 -12.65705 -12.58948 -12.40058 -12.23157 -12.09320 -12.06131 -11.91028 -11.81537 -11.73154 -11.56591 -11.45374 -11.00539 -10.73195 -10.51282 -10.29607 -9.88073 -8.33022 -6.47979 -0.66393 1.33946 1.35996 1.48137 1.77104 2.34130 2.69818 2.90593 2.97881 3.13011 3.30749 3.56164 3.79998 3.81979 3.97002 3.99641 4.09245 4.15384 4.19749 4.24766 4.27334 4.30737 4.35212 4.36867 4.49550 4.57654 4.74622 4.78401 4.81101 4.83092 4.86055 4.93943 4.95778 4.98873 5.00213 5.03606 5.12056 5.17614 5.21878 5.34602 5.35864 5.40207 5.42902 5.58388 5.60635 6.17441 6.37180 6.63755 7.25691 8.83493 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.004296 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.909545 B = 6516.277346 C = 6898.128197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.388 6.388 5 C 0.077 3.923 6 H 0.073 0.927 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.105 3.895 10 N -0.998 5.998 11 S 2.614 3.386 12 O -0.990 6.990 13 O -0.987 6.987 14 C -0.570 4.570 15 C -0.034 4.034 16 C -0.518 4.518 17 H 0.026 0.974 18 C 0.028 3.972 19 N -0.941 5.941 20 Si 0.935 3.065 21 H -0.257 1.257 22 H -0.218 1.218 23 H -0.294 1.294 24 C -0.172 4.172 25 C -0.167 4.167 26 C 0.121 3.879 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.269 0.731 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 23.617 -9.975 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.307 6.307 5 C 0.018 3.982 6 H 0.091 0.909 7 C -0.169 4.169 8 C -0.168 4.168 9 C -0.019 4.019 10 N -0.838 5.838 11 S 2.713 3.287 12 O -0.981 6.981 13 O -0.977 6.977 14 C -0.702 4.702 15 C -0.036 4.036 16 C -0.555 4.555 17 H 0.044 0.956 18 C -0.172 4.172 19 N -0.578 5.578 20 Si 0.757 3.243 21 H -0.182 1.182 22 H -0.141 1.141 23 H -0.221 1.221 24 C -0.209 4.209 25 C -0.206 4.206 26 C -0.004 4.004 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.596 23.149 -8.939 25.439 hybrid contribution -0.226 -0.942 -0.854 1.291 sum 5.371 22.208 -9.793 24.858 Atomic orbital electron populations 1.22363 0.95831 1.02360 1.03115 1.22335 0.93846 0.94354 0.87883 1.21858 1.01727 0.93719 1.03026 1.87908 1.86484 1.19369 1.36987 1.22438 0.97650 0.81517 0.96628 0.90932 1.21947 0.96226 0.96118 1.02567 1.22019 1.04143 0.94646 0.95993 1.21801 0.83177 1.00397 0.96558 1.57782 1.27158 1.17372 1.81444 1.04711 0.74109 0.72297 0.77612 1.93455 1.70924 1.76776 1.56917 1.93521 1.68382 1.51884 1.83894 1.30191 1.11629 1.08068 1.20327 1.18767 0.86329 0.93747 1.04796 1.20442 1.47655 0.94385 0.92999 0.95581 1.25965 0.92552 0.93922 1.04732 1.70065 1.46572 1.03951 1.37245 0.85975 0.79230 0.80689 0.78373 1.18188 1.14067 1.22134 1.23063 1.00537 1.00588 0.96715 1.23089 1.01051 1.02630 0.93807 1.21363 1.02469 0.78886 0.97710 0.90031 0.92950 0.92372 0.91097 0.92010 0.89602 0.92450 0.89927 0.90818 0.90919 0.87988 0.89821 0.90125 0.84865 0.82989 0.92191 0.90200 0.87043 0.86396 0.90090 0.89420 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.52 71.98 0.69 -1.84 16 2 C 0.07 1.06 3.13 30.60 0.10 1.16 16 3 C -0.15 -1.70 9.56 71.98 0.69 -1.01 16 4 O -0.39 -7.57 9.64 -148.98 -1.44 -9.01 16 5 C 0.08 1.48 2.55 30.67 0.08 1.56 16 6 H 0.07 1.27 7.63 -2.39 -0.02 1.25 16 7 C -0.13 -2.06 5.50 30.62 0.17 -1.89 16 8 C -0.13 -2.18 6.10 30.81 0.19 -1.99 16 9 C 0.11 2.56 6.34 86.51 0.55 3.11 16 10 N -1.00 -28.94 3.21 -512.32 -1.65 -30.58 16 11 S 2.61 105.25 5.06 -56.49 -0.29 104.96 16 12 O -0.99 -43.67 16.72 -127.65 -2.13 -45.80 16 13 O -0.99 -49.67 16.20 -127.65 -2.07 -51.74 16 14 C -0.57 -20.65 5.81 71.98 0.42 -20.24 16 15 C -0.03 -1.50 0.87 -52.93 -0.05 -1.55 16 16 C -0.52 -29.91 8.47 25.60 0.22 -29.70 16 17 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 18 C 0.03 1.60 5.47 84.65 0.46 2.07 16 19 N -0.94 -59.74 13.96 21.45 0.30 -59.45 16 20 Si 0.94 41.78 24.92 68.60 1.71 43.49 16 21 H -0.26 -10.80 7.06 99.48 0.70 -10.10 16 22 H -0.22 -8.20 5.68 99.48 0.57 -7.63 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 C -0.17 -6.71 9.95 30.59 0.30 -6.40 16 25 C -0.17 -6.24 7.67 30.59 0.23 -6.00 16 26 C 0.12 2.99 5.96 86.36 0.52 3.50 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.80 7.97 -2.39 -0.02 0.78 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 0.87 7.63 -2.39 -0.02 0.85 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.08 1.04 7.97 -2.38 -0.02 1.02 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.25 7.09 -2.39 -0.02 2.23 16 40 H 0.13 4.63 6.35 -2.39 -0.02 4.61 16 41 H 0.15 3.97 8.11 -2.39 -0.02 3.95 16 42 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 45 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.08 3.23 7.28 -2.39 -0.02 3.22 16 47 H 0.09 2.29 7.10 -2.39 -0.02 2.27 16 48 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -79.01 385.83 -0.24 -79.24 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.77 Total: 28.11 kcal Atomic # 6 Polarization: -63.79 SS G_CDS: 4.56 Total: -59.23 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -1.35 Total: -90.03 kcal Atomic # 8 Polarization: -100.91 SS G_CDS: -5.64 Total: -106.55 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.71 Total: 43.49 kcal Atomic # 16 Polarization: 105.25 SS G_CDS: -0.29 Total: 104.96 kcal Total: -79.01 -0.24 -79.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593624966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.775 kcal (2) G-P(sol) polarization free energy of solvation -79.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds