Wall clock time and date at job start Tue Mar 31 2020 17:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70973 * 2 1 4 4 O 1.43188 * 109.70664 * 239.36824 * 2 1 3 5 5 C 1.36113 * 116.68403 * 194.04243 * 4 2 1 6 6 C 1.38695 * 119.38573 * 197.19143 * 5 4 2 7 7 C 1.38202 * 120.06425 * 180.17174 * 6 5 4 8 8 C 1.38253 * 120.11026 * 0.02562 * 7 6 5 9 9 C 1.38192 * 120.11681 * 359.92310 * 8 7 6 10 10 C 1.38706 * 120.06935 * 0.03022 * 9 8 7 11 11 O 1.36101 * 119.40206 * 180.13811 * 10 9 8 12 12 C 1.43178 * 116.71766 * 197.05167 * 11 10 9 13 13 H 1.09000 * 109.70636 * 73.55443 * 12 11 10 14 14 C 1.50706 * 109.74116 * 194.15416 * 12 11 10 15 15 O 1.21279 * 119.99813 * 24.29761 * 14 12 11 16 16 N 1.34776 * 119.99905 * 204.29027 * 14 12 11 17 17 C 1.46928 * 120.63164 * 5.25464 * 16 14 12 18 18 C 1.53617 * 108.54233 * 126.36357 * 17 16 14 19 19 C 1.53046 * 109.24405 * 54.85651 * 18 17 16 20 20 C 1.53038 * 109.53611 * 298.51168 * 19 18 17 21 21 H 1.09001 * 109.52350 * 301.39194 * 20 19 18 22 22 C 1.50700 * 109.49595 * 181.31234 * 20 19 18 23 23 H 1.07998 * 120.00197 * 240.16314 * 22 20 19 24 24 C 1.37875 * 120.00175 * 60.16413 * 22 20 19 25 25 N 1.31521 * 119.99879 * 359.97438 * 24 22 20 26 26 Si 1.86797 * 120.00220 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47164 * 90.00079 * 26 24 22 28 28 H 1.48498 * 109.47065 * 209.99634 * 26 24 22 29 29 H 1.48495 * 109.47308 * 329.99438 * 26 24 22 30 30 C 1.46924 * 120.63015 * 185.53116 * 16 14 12 31 31 H 1.09005 * 109.47222 * 294.92485 * 1 2 3 32 32 H 1.09001 * 109.47316 * 174.93137 * 1 2 3 33 33 H 1.09000 * 109.47854 * 54.92525 * 1 2 3 34 34 H 1.07997 * 119.96953 * 0.19238 * 6 5 4 35 35 H 1.08000 * 119.94409 * 180.02562 * 7 6 5 36 36 H 1.07995 * 119.93965 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.96822 * 180.02562 * 9 8 7 38 38 H 1.08991 * 109.58783 * 246.19996 * 17 16 14 39 39 H 1.09002 * 109.58539 * 6.62285 * 17 16 14 40 40 H 1.09000 * 109.64086 * 294.86706 * 18 17 16 41 41 H 1.09003 * 109.45841 * 174.73852 * 18 17 16 42 42 H 1.08999 * 109.46230 * 178.48676 * 19 18 17 43 43 H 1.09007 * 109.45728 * 58.52821 * 19 18 17 44 44 H 0.96998 * 119.99942 * 180.02562 * 25 24 22 45 45 H 1.09002 * 109.58811 * 353.37379 * 30 16 14 46 46 H 1.09001 * 109.58466 * 113.79952 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0128 -0.6868 -1.1599 5 6 3.3297 -1.0312 -1.1624 6 6 3.9440 -1.3634 -2.3607 7 6 5.2795 -1.7186 -2.3789 8 6 6.0064 -1.7445 -1.2032 9 6 5.4006 -1.4137 -0.0060 10 6 4.0609 -1.0552 0.0193 11 8 3.4787 -0.7293 1.2055 12 6 2.0474 -0.7365 1.2436 13 1 1.6848 -1.7644 1.2400 14 6 1.5677 -0.0328 2.4870 15 8 2.2745 0.7906 3.0286 16 7 0.3533 -0.3185 2.9969 17 6 -0.4664 -1.3933 2.4211 18 6 -0.8674 -2.3584 3.5470 19 6 -1.5575 -1.5718 4.6638 20 6 -0.5851 -0.5392 5.2386 21 1 0.3016 -1.0461 5.6193 22 6 -1.2548 0.2129 6.3597 23 1 -1.3787 1.2837 6.2933 24 6 -1.7095 -0.4660 7.4702 25 7 -1.5592 -1.7701 7.5509 26 14 -2.5391 0.4663 8.8602 27 1 -4.0012 0.5318 8.6089 28 1 -2.2886 -0.2347 10.1451 29 1 -1.9869 1.8429 8.9316 30 6 -0.1785 0.4429 4.1354 31 1 -0.3634 0.4331 0.9320 32 1 -0.3634 -1.0236 -0.0908 33 1 -0.3635 0.5905 -0.8410 34 1 3.3783 -1.3440 -3.2805 35 1 5.7560 -1.9765 -3.3131 36 1 7.0497 -2.0229 -1.2206 37 1 5.9708 -1.4343 0.9109 38 1 -1.3602 -0.9672 1.9658 39 1 0.1105 -1.9288 1.6671 40 1 0.0218 -2.8487 3.9434 41 1 -1.5526 -3.1098 3.1544 42 1 -1.8676 -2.2571 5.4527 43 1 -2.4327 -1.0617 4.2613 44 1 -1.8794 -2.2478 8.3320 45 1 0.5884 1.1193 4.5129 46 1 -1.0494 1.0158 3.8169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597916369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:20 Heat of formation + Delta-G solvation = -73.938571 kcal Electronic energy + Delta-G solvation = -29335.224502 eV Core-core repulsion = 25383.727851 eV Total energy + Delta-G solvation = -3951.496651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72126 -39.80017 -37.86590 -37.52736 -36.70739 -34.07821 -32.83924 -31.41871 -30.91777 -30.22978 -29.25861 -27.72503 -25.28891 -24.52648 -23.84246 -22.86849 -21.94504 -21.27664 -19.86602 -19.10056 -18.64172 -17.91713 -17.07255 -16.56695 -16.15008 -15.89981 -15.45479 -15.05283 -14.89026 -14.66779 -14.56857 -14.20657 -14.01423 -13.72833 -13.58927 -13.25623 -12.97045 -12.88767 -12.67075 -12.57402 -12.24315 -12.09044 -12.03922 -11.96097 -11.50481 -11.20163 -11.03057 -10.87819 -10.79552 -10.60680 -10.37188 -10.01218 -9.91037 -9.59916 -9.43453 -8.91146 -8.83540 -8.45879 -8.23857 -8.08997 -6.07513 -4.14990 1.09988 1.11923 2.37159 2.72525 2.88447 3.26186 3.33662 3.37012 3.48623 3.59144 3.98359 4.35236 4.38828 4.40159 4.48073 4.68541 4.79509 4.96894 5.04082 5.14236 5.18170 5.21502 5.23822 5.36865 5.47039 5.50420 5.60090 5.67647 5.83684 5.92868 5.96664 6.01167 6.21519 6.24681 6.26078 6.35206 6.42872 6.52807 6.63546 6.73848 6.80960 7.05760 7.21320 7.24512 7.61960 7.70036 7.87103 7.99987 8.26253 8.37185 8.88346 9.50377 10.98114 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.002813 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.843216 B = 9951.154271 C =10239.018962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.067 3.933 3 H 0.092 0.908 4 O -0.301 6.301 5 C 0.048 3.952 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.116 4.116 9 C -0.112 4.112 10 C 0.056 3.944 11 O -0.280 6.280 12 C 0.036 3.964 13 H 0.107 0.893 14 C 0.522 3.478 15 O -0.520 6.520 16 N -0.594 5.594 17 C 0.099 3.901 18 C -0.137 4.137 19 C -0.113 4.113 20 C 0.040 3.960 21 H 0.031 0.969 22 C -0.515 4.515 23 H 0.058 0.942 24 C 0.064 3.936 25 N -0.888 5.888 26 Si 0.894 3.106 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.117 3.883 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.037 0.963 44 H 0.261 0.739 45 H 0.081 0.919 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -2.159 -20.192 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 H 0.109 0.891 4 O -0.216 6.216 5 C 0.003 3.997 6 C -0.132 4.132 7 C -0.139 4.139 8 C -0.134 4.134 9 C -0.131 4.131 10 C 0.010 3.990 11 O -0.194 6.194 12 C -0.024 4.024 13 H 0.124 0.876 14 C 0.307 3.693 15 O -0.395 6.395 16 N -0.328 5.328 17 C -0.023 4.023 18 C -0.175 4.175 19 C -0.151 4.151 20 C 0.021 3.979 21 H 0.049 0.951 22 C -0.554 4.554 23 H 0.076 0.924 24 C -0.138 4.138 25 N -0.527 5.527 26 Si 0.721 3.279 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 C -0.003 4.003 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.310 -1.831 -19.716 21.107 hybrid contribution -0.579 0.292 0.863 1.079 sum 6.731 -1.540 -18.853 20.077 Atomic orbital electron populations 1.22215 0.90215 1.04398 1.04671 1.23003 0.97319 0.95768 0.82931 0.89064 1.86330 1.21468 1.73138 1.40617 1.18977 0.84436 1.02790 0.93533 1.20428 0.94747 1.02608 0.95466 1.20903 0.93169 1.01173 0.98611 1.20913 1.00174 1.00795 0.91532 1.20492 0.91883 1.01078 0.99657 1.19075 0.94017 1.01870 0.84017 1.86403 1.18977 1.84662 1.29321 1.23184 0.81105 1.01942 0.96212 0.87573 1.19420 0.82163 0.83381 0.84371 1.90724 1.54092 1.34304 1.60410 1.48284 1.16099 1.35015 1.33379 1.22227 0.94900 0.88747 0.96437 1.22115 1.01009 0.97469 0.96885 1.21647 0.97692 0.99514 0.96214 1.18981 0.95535 0.92369 0.91016 0.95093 1.21044 1.38418 0.93912 1.02017 0.92412 1.24936 0.95826 0.94888 0.98134 1.69868 1.46655 1.06795 1.29361 0.86565 0.79673 0.80042 0.81571 1.20665 1.21221 1.19840 1.22121 0.97809 0.95164 0.85164 0.88751 0.90389 0.90424 0.84844 0.85131 0.85049 0.84605 0.90887 0.91192 0.92210 0.92159 0.88482 0.94392 0.92904 0.90008 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 7.79 37.16 0.29 -1.33 16 2 C 0.07 0.86 3.17 -26.47 -0.08 0.77 16 3 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 4 O -0.30 -3.90 10.07 -32.87 -0.33 -4.23 16 5 C 0.05 0.62 6.49 -39.14 -0.25 0.37 16 6 C -0.11 -1.18 9.96 -39.43 -0.39 -1.58 16 7 C -0.12 -1.06 10.04 -39.59 -0.40 -1.45 16 8 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 9 C -0.11 -1.34 9.96 -39.43 -0.39 -1.73 16 10 C 0.06 0.79 6.49 -39.13 -0.25 0.54 16 11 O -0.28 -4.68 9.73 -46.37 -0.45 -5.13 16 12 C 0.04 0.54 2.54 -27.61 -0.07 0.47 16 13 H 0.11 1.44 6.04 -51.93 -0.31 1.13 16 14 C 0.52 9.44 6.32 -10.98 -0.07 9.37 16 15 O -0.52 -11.47 16.10 -12.84 -0.21 -11.68 16 16 N -0.59 -10.27 2.25 -172.51 -0.39 -10.66 16 17 C 0.10 1.40 4.12 -3.49 -0.01 1.39 16 18 C -0.14 -2.28 6.10 -26.39 -0.16 -2.45 16 19 C -0.11 -2.39 4.96 -26.69 -0.13 -2.53 16 20 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 21 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 22 C -0.52 -13.53 8.56 -34.44 -0.29 -13.82 16 23 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 24 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 25 N -0.89 -24.45 11.32 55.43 0.63 -23.83 16 26 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 30 C 0.12 2.39 5.66 -3.71 -0.02 2.37 16 31 H 0.09 1.06 5.21 -51.93 -0.27 0.79 16 32 H 0.08 0.70 6.92 -51.93 -0.36 0.34 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.07 0.89 7.16 -51.93 -0.37 0.52 16 39 H 0.07 0.82 4.41 -51.93 -0.23 0.59 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.10 2.38 6.05 -51.93 -0.31 2.06 16 43 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 44 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.08 1.81 7.00 -51.93 -0.36 1.45 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -30.88 358.18 -9.73 -40.62 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.41 Total: 2.55 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.95 Total: -8.73 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.24 Total: -34.49 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.99 Total: -21.05 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.88 -9.73 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.320 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds