Wall clock time and date at job start Tue Mar 31 2020 17:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70973 * 2 1 4 4 O 1.43188 * 109.70664 * 239.36824 * 2 1 3 5 5 C 1.36113 * 116.68403 * 194.04243 * 4 2 1 6 6 C 1.38695 * 119.38573 * 197.19143 * 5 4 2 7 7 C 1.38202 * 120.06425 * 180.17174 * 6 5 4 8 8 C 1.38253 * 120.11026 * 0.02562 * 7 6 5 9 9 C 1.38192 * 120.11681 * 359.92310 * 8 7 6 10 10 C 1.38706 * 120.06935 * 0.03022 * 9 8 7 11 11 O 1.36101 * 119.40206 * 180.13811 * 10 9 8 12 12 C 1.43178 * 116.71766 * 197.05167 * 11 10 9 13 13 H 1.09000 * 109.70636 * 73.55443 * 12 11 10 14 14 C 1.50706 * 109.74116 * 194.15416 * 12 11 10 15 15 O 1.21279 * 119.99813 * 24.29761 * 14 12 11 16 16 N 1.34776 * 119.99905 * 204.29027 * 14 12 11 17 17 C 1.46928 * 120.63164 * 5.25464 * 16 14 12 18 18 C 1.53617 * 108.54233 * 126.36357 * 17 16 14 19 19 C 1.53046 * 109.24405 * 54.85651 * 18 17 16 20 20 C 1.53038 * 109.53611 * 298.51168 * 19 18 17 21 21 H 1.09001 * 109.52350 * 301.39194 * 20 19 18 22 22 C 1.50700 * 109.49595 * 181.31234 * 20 19 18 23 23 H 1.07998 * 120.00197 * 240.16314 * 22 20 19 24 24 C 1.37875 * 120.00175 * 60.16413 * 22 20 19 25 25 N 1.31521 * 119.99879 * 359.97438 * 24 22 20 26 26 Si 1.86797 * 120.00220 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47164 * 90.00079 * 26 24 22 28 28 H 1.48498 * 109.47065 * 209.99634 * 26 24 22 29 29 H 1.48495 * 109.47308 * 329.99438 * 26 24 22 30 30 C 1.46924 * 120.63015 * 185.53116 * 16 14 12 31 31 H 1.09005 * 109.47222 * 294.92485 * 1 2 3 32 32 H 1.09001 * 109.47316 * 174.93137 * 1 2 3 33 33 H 1.09000 * 109.47854 * 54.92525 * 1 2 3 34 34 H 1.07997 * 119.96953 * 0.19238 * 6 5 4 35 35 H 1.08000 * 119.94409 * 180.02562 * 7 6 5 36 36 H 1.07995 * 119.93965 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.96822 * 180.02562 * 9 8 7 38 38 H 1.08991 * 109.58783 * 246.19996 * 17 16 14 39 39 H 1.09002 * 109.58539 * 6.62285 * 17 16 14 40 40 H 1.09000 * 109.64086 * 294.86706 * 18 17 16 41 41 H 1.09003 * 109.45841 * 174.73852 * 18 17 16 42 42 H 1.08999 * 109.46230 * 178.48676 * 19 18 17 43 43 H 1.09007 * 109.45728 * 58.52821 * 19 18 17 44 44 H 0.96998 * 119.99942 * 180.02562 * 25 24 22 45 45 H 1.09002 * 109.58811 * 353.37379 * 30 16 14 46 46 H 1.09001 * 109.58466 * 113.79952 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 8 2.0128 -0.6868 -1.1599 5 6 3.3297 -1.0312 -1.1624 6 6 3.9440 -1.3634 -2.3607 7 6 5.2795 -1.7186 -2.3789 8 6 6.0064 -1.7445 -1.2032 9 6 5.4006 -1.4137 -0.0060 10 6 4.0609 -1.0552 0.0193 11 8 3.4787 -0.7293 1.2055 12 6 2.0474 -0.7365 1.2436 13 1 1.6848 -1.7644 1.2400 14 6 1.5677 -0.0328 2.4870 15 8 2.2745 0.7906 3.0286 16 7 0.3533 -0.3185 2.9969 17 6 -0.4664 -1.3933 2.4211 18 6 -0.8674 -2.3584 3.5470 19 6 -1.5575 -1.5718 4.6638 20 6 -0.5851 -0.5392 5.2386 21 1 0.3016 -1.0461 5.6193 22 6 -1.2548 0.2129 6.3597 23 1 -1.3787 1.2837 6.2933 24 6 -1.7095 -0.4660 7.4702 25 7 -1.5592 -1.7701 7.5509 26 14 -2.5391 0.4663 8.8602 27 1 -4.0012 0.5318 8.6089 28 1 -2.2886 -0.2347 10.1451 29 1 -1.9869 1.8429 8.9316 30 6 -0.1785 0.4429 4.1354 31 1 -0.3634 0.4331 0.9320 32 1 -0.3634 -1.0236 -0.0908 33 1 -0.3635 0.5905 -0.8410 34 1 3.3783 -1.3440 -3.2805 35 1 5.7560 -1.9765 -3.3131 36 1 7.0497 -2.0229 -1.2206 37 1 5.9708 -1.4343 0.9109 38 1 -1.3602 -0.9672 1.9658 39 1 0.1105 -1.9288 1.6671 40 1 0.0218 -2.8487 3.9434 41 1 -1.5526 -3.1098 3.1544 42 1 -1.8676 -2.2571 5.4527 43 1 -2.4327 -1.0617 4.2613 44 1 -1.8794 -2.2478 8.3320 45 1 0.5884 1.1193 4.5129 46 1 -1.0494 1.0158 3.8169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597916369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:19 Heat of formation + Delta-G solvation = -90.971724 kcal Electronic energy + Delta-G solvation = -29335.963115 eV Core-core repulsion = 25383.727851 eV Total energy + Delta-G solvation = -3952.235264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.77559 -41.12659 -38.84217 -38.67538 -38.11485 -35.68293 -34.17774 -32.96781 -31.99536 -31.64237 -30.12229 -28.87094 -27.10675 -25.96826 -24.82737 -23.72279 -23.47028 -22.48698 -21.29193 -20.24641 -19.87318 -19.12182 -18.41727 -18.08924 -17.44363 -17.03745 -16.72007 -16.57821 -16.02916 -15.82976 -15.68113 -15.45105 -15.14597 -14.99122 -14.84619 -14.63938 -14.55271 -14.12043 -13.95107 -13.73657 -13.47174 -13.36364 -12.91963 -12.86279 -12.82809 -12.71336 -12.62331 -12.37149 -12.11666 -11.95615 -11.81718 -11.70867 -11.48719 -11.29612 -10.96203 -10.75559 -10.44084 -9.69296 -9.63909 -9.15172 -8.11765 -6.26774 0.26919 0.27862 1.07706 1.40402 1.42134 1.47414 1.52393 1.89302 2.33346 2.44112 2.71493 2.93174 3.13380 3.15433 3.37998 3.49575 3.78501 3.92403 4.04599 4.11242 4.17061 4.25568 4.29642 4.40300 4.46701 4.49108 4.52811 4.60443 4.70311 4.75456 4.79614 4.87656 4.92946 5.06813 5.08229 5.16293 5.18222 5.21819 5.41131 5.49266 5.49548 5.60709 5.68712 5.79567 5.91809 6.12659 6.26245 6.30115 6.33265 6.81418 6.91952 7.41674 8.92079 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.002813 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.843216 B = 9951.154271 C =10239.018962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.073 3.927 3 H 0.075 0.925 4 O -0.299 6.299 5 C 0.026 3.974 6 C -0.115 4.115 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.130 4.130 10 C 0.020 3.980 11 O -0.315 6.315 12 C 0.042 3.958 13 H 0.123 0.877 14 C 0.520 3.480 15 O -0.571 6.571 16 N -0.591 5.591 17 C 0.100 3.900 18 C -0.130 4.130 19 C -0.105 4.105 20 C 0.040 3.960 21 H -0.018 1.018 22 C -0.536 4.536 23 H 0.055 0.945 24 C 0.017 3.983 25 N -0.914 5.914 26 Si 0.955 3.045 27 H -0.269 1.269 28 H -0.286 1.286 29 H -0.272 1.272 30 C 0.130 3.870 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.039 0.961 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.261 0.739 45 H 0.053 0.947 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -2.935 -23.614 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 H 0.093 0.907 4 O -0.214 6.214 5 C -0.019 4.019 6 C -0.133 4.133 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.148 4.148 10 C -0.024 4.024 11 O -0.229 6.229 12 C -0.018 4.018 13 H 0.140 0.860 14 C 0.307 3.693 15 O -0.451 6.451 16 N -0.323 5.323 17 C -0.021 4.021 18 C -0.168 4.168 19 C -0.144 4.144 20 C 0.021 3.979 21 H 0.000 1.000 22 C -0.574 4.574 23 H 0.073 0.927 24 C -0.183 4.183 25 N -0.553 5.553 26 Si 0.780 3.220 27 H -0.195 1.195 28 H -0.212 1.212 29 H -0.197 1.197 30 C 0.009 3.991 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.181 0.819 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.057 0.943 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.824 -2.632 -23.172 24.298 hybrid contribution -0.287 0.497 1.888 1.973 sum 6.537 -2.134 -21.283 22.367 Atomic orbital electron populations 1.22240 0.87897 1.05983 1.04972 1.22978 0.98922 0.94590 0.81972 0.90659 1.86320 1.21683 1.73218 1.40144 1.19303 0.84545 1.03937 0.94073 1.20831 0.95634 1.01626 0.95212 1.21404 0.92441 0.98842 0.99882 1.21331 1.01631 0.99056 0.90582 1.20760 0.91352 1.01718 1.00988 1.19450 0.95083 1.04223 0.83684 1.86329 1.19669 1.85620 1.31311 1.23134 0.81096 1.02370 0.95186 0.85994 1.20005 0.81604 0.82729 0.84985 1.90689 1.55503 1.36680 1.62188 1.48266 1.16318 1.35342 1.32346 1.22527 0.96226 0.87496 0.95850 1.22033 1.00449 0.98137 0.96223 1.21431 0.97619 0.98507 0.96805 1.18891 0.94015 0.93260 0.91749 0.99969 1.21421 1.38558 0.94087 1.03354 0.92651 1.25686 0.96501 0.95676 1.00394 1.70014 1.47394 1.08003 1.29880 0.85607 0.79123 0.78656 0.78574 1.19468 1.21229 1.19718 1.21711 0.97561 0.94299 0.85542 0.89691 0.88392 0.88538 0.82674 0.81256 0.81877 0.84898 0.87512 0.88000 0.94254 0.88643 0.91965 0.93433 0.92974 0.92818 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 7.79 71.98 0.56 -2.17 16 2 C 0.07 1.80 3.17 30.77 0.10 1.90 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 O -0.30 -7.24 10.07 -82.62 -0.83 -8.07 16 5 C 0.03 0.65 6.49 22.56 0.15 0.79 16 6 C -0.11 -2.04 9.96 22.37 0.22 -1.82 16 7 C -0.11 -1.47 10.04 22.26 0.22 -1.25 16 8 C -0.11 -1.70 10.04 22.26 0.22 -1.48 16 9 C -0.13 -3.03 9.96 22.37 0.22 -2.80 16 10 C 0.02 0.57 6.49 22.56 0.15 0.72 16 11 O -0.31 -10.94 9.73 -69.54 -0.68 -11.61 16 12 C 0.04 1.26 2.54 30.02 0.08 1.34 16 13 H 0.12 3.16 6.04 -2.39 -0.01 3.15 16 14 C 0.52 19.37 6.32 87.66 0.55 19.92 16 15 O -0.57 -26.83 16.10 14.57 0.23 -26.60 16 16 N -0.59 -20.49 2.25 -818.08 -1.84 -22.33 16 17 C 0.10 2.58 4.12 86.51 0.36 2.94 16 18 C -0.13 -4.20 6.10 30.82 0.19 -4.01 16 19 C -0.11 -4.53 4.96 30.62 0.15 -4.38 16 20 C 0.04 1.97 2.25 -11.46 -0.03 1.95 16 21 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 22 C -0.54 -29.08 8.56 25.60 0.22 -28.86 16 23 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 24 C 0.02 0.90 5.30 84.65 0.45 1.35 16 25 N -0.91 -51.97 11.32 21.45 0.24 -51.72 16 26 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 28 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 30 C 0.13 5.48 5.66 86.36 0.49 5.97 16 31 H 0.08 1.70 5.21 -2.38 -0.01 1.69 16 32 H 0.10 1.35 6.92 -2.39 -0.02 1.33 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.11 2.16 7.16 -2.39 -0.02 2.14 16 39 H 0.10 2.05 4.41 -2.39 -0.01 2.04 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.06 3.13 6.05 -2.39 -0.01 3.11 16 43 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.05 2.54 7.00 -2.39 -0.02 2.52 16 46 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -73.20 358.18 4.45 -68.75 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 1.00 Total: 16.23 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 4.30 Total: -9.89 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.60 Total: -74.05 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -1.27 Total: -46.28 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.20 4.45 -68.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597916369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.225 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds