Wall clock time and date at job start Tue Mar 31 2020 16:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47670 * 2 1 4 4 O 1.45201 * 109.47191 * 120.00053 * 2 1 3 5 5 C 1.34226 * 116.99954 * 149.99313 * 4 2 1 6 6 O 1.20824 * 120.00406 * 0.02562 * 5 4 2 7 7 C 1.50710 * 119.99606 * 179.97438 * 5 4 2 8 8 H 1.08995 * 109.99704 * 59.65124 * 7 5 4 9 9 C 1.54321 * 109.88392 * 298.55023 * 7 5 4 10 10 C 1.55153 * 103.10006 * 218.48011 * 9 7 5 11 11 C 1.54910 * 101.58478 * 35.41571 * 10 9 7 12 12 N 1.47322 * 110.06209 * 180.81745 * 7 5 4 13 13 C 1.34780 * 125.61306 * 298.32621 * 12 7 5 14 14 O 1.21605 * 120.00183 * 354.52090 * 13 12 7 15 15 C 1.47432 * 119.99932 * 174.53588 * 13 12 7 16 16 C 1.39229 * 120.28012 * 321.65793 * 15 13 12 17 17 C 1.38218 * 120.09479 * 179.72145 * 16 15 13 18 18 C 1.38827 * 120.67263 * 0.56497 * 17 16 15 19 19 C 1.37596 * 120.57256 * 359.71070 * 18 17 16 20 20 C 1.40715 * 119.88026 * 0.02562 * 19 18 17 21 21 C 1.40886 * 120.32607 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00073 * 150.47154 * 21 20 19 23 23 C 1.40270 * 120.00096 * 330.46458 * 21 20 19 24 24 N 1.30634 * 119.99909 * 349.73067 * 23 21 20 25 25 Si 1.86799 * 119.99981 * 169.73490 * 23 21 20 26 26 H 1.48503 * 109.47320 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47494 * 119.99936 * 25 23 21 28 28 H 1.48500 * 109.47043 * 239.99960 * 25 23 21 29 29 H 1.09007 * 109.47194 * 300.00382 * 1 2 3 30 30 H 1.09004 * 109.47172 * 59.99755 * 1 2 3 31 31 H 1.08994 * 109.47739 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47019 * 239.99383 * 2 1 3 33 33 H 1.09003 * 109.46772 * 59.99937 * 3 2 1 34 34 H 1.08995 * 109.47146 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47023 * 300.00336 * 3 2 1 36 36 H 1.08993 * 110.72008 * 100.02811 * 9 7 5 37 37 H 1.09001 * 110.72013 * 336.92889 * 9 7 5 38 38 H 1.09006 * 111.00724 * 153.48494 * 10 9 7 39 39 H 1.09002 * 111.00535 * 277.29891 * 10 9 7 40 40 H 1.09000 * 110.36971 * 81.82589 * 11 10 9 41 41 H 1.09000 * 110.36629 * 204.15776 * 11 10 9 42 42 H 1.08008 * 119.94910 * 0.02562 * 16 15 13 43 43 H 1.07999 * 119.66737 * 180.25330 * 17 16 15 44 44 H 1.07995 * 119.71676 * 179.74188 * 18 17 16 45 45 H 1.07996 * 120.06549 * 180.02562 * 19 18 17 46 46 H 0.97002 * 119.99575 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3171 1.0850 6 8 3.8018 -1.2992 0.0412 7 6 3.7599 -2.0489 2.2747 8 1 3.0703 -2.8299 2.5947 9 6 4.0048 -1.0583 3.4323 10 6 5.3363 -1.5614 4.0499 11 6 6.0990 -2.0465 2.7919 12 7 5.0629 -2.6430 1.9292 13 6 5.2733 -3.5747 0.9783 14 8 4.3298 -4.0668 0.3898 15 6 6.6475 -3.9975 0.6518 16 6 7.6817 -3.0657 0.6277 17 6 8.9695 -3.4674 0.3267 18 6 9.2470 -4.7958 0.0344 19 6 8.2450 -5.7388 0.0448 20 6 6.9262 -5.3569 0.3533 21 6 5.8931 -6.3147 0.3672 22 1 5.0437 -6.1833 1.0211 23 6 5.9677 -7.4389 -0.4684 24 7 6.8831 -7.5020 -1.3983 25 14 4.7580 -8.8457 -0.2516 26 1 3.8284 -8.5319 0.8632 27 1 3.9838 -9.0306 -1.5052 28 1 5.5005 -10.0934 0.0602 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4423 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 3.1971 -1.1107 4.1622 37 1 4.1151 -0.0421 3.0536 38 1 5.8708 -0.7485 4.5415 39 1 5.1594 -2.3847 4.7420 40 1 6.5738 -1.2047 2.2879 41 1 6.8427 -2.7952 3.0644 42 1 7.4781 -2.0284 0.8492 43 1 9.7673 -2.7395 0.3140 44 1 10.2582 -5.0919 -0.2027 45 1 8.4701 -6.7700 -0.1835 46 1 6.9348 -8.2796 -1.9758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601202826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:57 Heat of formation + Delta-G solvation = -99.824415 kcal Electronic energy + Delta-G solvation = -29322.378742 eV Core-core repulsion = 25369.759597 eV Total energy + Delta-G solvation = -3952.619145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68487 -39.18329 -37.47256 -36.35813 -36.22363 -33.72989 -33.19886 -31.43790 -30.06862 -29.73769 -28.88466 -27.43317 -25.50218 -24.33742 -22.89987 -21.53917 -21.28460 -20.91126 -20.19133 -18.77921 -17.79020 -17.23034 -16.49288 -16.29302 -15.75943 -15.60244 -15.24451 -14.56956 -14.38055 -14.08440 -13.83683 -13.55819 -13.47722 -13.11599 -13.01573 -12.75457 -12.54726 -12.48231 -12.45667 -12.08873 -12.02423 -11.84620 -11.62672 -11.53204 -11.19610 -11.12571 -11.02013 -10.92966 -10.90210 -10.75608 -10.47595 -10.45979 -10.08946 -9.90321 -9.61340 -9.26327 -8.67097 -8.16928 -7.51829 -7.39395 -6.77746 -4.39023 2.40458 2.50164 2.71544 2.84808 3.09540 3.17630 3.23322 3.57852 3.96280 4.06853 4.48223 4.54575 4.64001 4.69478 4.81081 4.82886 5.03459 5.06224 5.25624 5.36009 5.44330 5.54638 5.61301 5.63919 5.65073 5.71197 5.77828 5.88369 5.90043 5.96156 5.99626 6.00053 6.12553 6.22065 6.37556 6.51834 6.64493 6.83341 7.01490 7.15141 7.24708 7.49398 7.71593 7.89704 8.00451 8.05324 8.16939 8.27626 8.60175 8.81499 8.88720 9.28694 10.15432 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004141 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.653710 B = 6759.548060 C = 7884.949181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 C -0.167 4.167 4 O -0.357 6.357 5 C 0.449 3.551 6 O -0.480 6.480 7 C 0.150 3.850 8 H 0.108 0.892 9 C -0.116 4.116 10 C -0.134 4.134 11 C 0.106 3.894 12 N -0.615 5.615 13 C 0.601 3.399 14 O -0.525 6.525 15 C -0.252 4.252 16 C -0.056 4.056 17 C -0.249 4.249 18 C -0.093 4.093 19 C -0.156 4.156 20 C 0.146 3.854 21 C -0.422 4.422 22 H 0.084 0.916 23 C 0.073 3.927 24 N -0.789 5.789 25 Si 0.915 3.085 26 H -0.259 1.259 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.123 0.877 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 12.756 9.062 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 C -0.224 4.224 4 O -0.275 6.275 5 C 0.289 3.711 6 O -0.364 6.364 7 C 0.043 3.957 8 H 0.126 0.874 9 C -0.154 4.154 10 C -0.172 4.172 11 C -0.017 4.017 12 N -0.353 5.353 13 C 0.396 3.604 14 O -0.400 6.400 15 C -0.257 4.257 16 C -0.074 4.074 17 C -0.268 4.268 18 C -0.112 4.112 19 C -0.175 4.175 20 C 0.143 3.857 21 C -0.450 4.450 22 H 0.102 0.898 23 C -0.145 4.145 24 N -0.414 5.414 25 Si 0.739 3.261 26 H -0.182 1.182 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.141 0.859 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.846 12.259 8.089 16.205 hybrid contribution -0.439 -0.423 -0.435 0.749 sum -7.285 11.836 7.654 15.866 Atomic orbital electron populations 1.21866 0.92602 1.03203 1.02781 1.22669 0.94804 0.92526 0.87732 1.22184 1.02145 0.95377 1.02723 1.86539 1.37076 1.63034 1.40841 1.24249 0.79300 0.76748 0.90850 1.90700 1.59058 1.56677 1.29992 1.21018 0.88989 0.95551 0.90111 0.87446 1.22557 0.99222 0.97975 0.95650 1.22862 0.95343 1.01535 0.97437 1.22352 0.91542 0.98316 0.89520 1.48635 1.05801 1.41931 1.38928 1.18229 0.90090 0.75592 0.76475 1.90698 1.44588 1.54289 1.50415 1.19303 0.90539 0.94775 1.21052 1.20726 0.92561 0.96617 0.97541 1.20268 0.95561 0.95856 1.15133 1.20802 0.97565 0.93631 0.99198 1.21388 0.91810 0.99252 1.05055 1.17413 0.92621 0.89435 0.86272 1.19736 1.04583 1.02184 1.18519 0.89768 1.26012 0.95903 0.99003 0.93593 1.69718 1.30068 1.28560 1.13032 0.86137 0.80575 0.79721 0.79631 1.18245 1.19780 1.19718 0.91543 0.90618 0.91625 0.89791 0.91688 0.92049 0.90933 0.88979 0.90436 0.89642 0.90063 0.91900 0.89323 0.88859 0.89185 0.89148 0.85881 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.57 37.16 0.36 -1.06 16 2 C 0.08 1.00 3.18 -26.73 -0.09 0.91 16 3 C -0.17 -1.77 9.55 37.16 0.35 -1.41 16 4 O -0.36 -5.29 9.84 -39.25 -0.39 -5.68 16 5 C 0.45 7.98 6.81 36.01 0.25 8.22 16 6 O -0.48 -10.52 14.45 -22.65 -0.33 -10.84 16 7 C 0.15 2.39 3.35 -67.94 -0.23 2.16 16 8 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 9 C -0.12 -1.24 6.43 -24.90 -0.16 -1.40 16 10 C -0.13 -1.37 7.09 -24.58 -0.17 -1.54 16 11 C 0.11 1.55 5.25 -2.53 -0.01 1.54 16 12 N -0.61 -11.74 2.85 -165.35 -0.47 -12.21 16 13 C 0.60 14.83 6.08 -12.52 -0.08 14.75 16 14 O -0.52 -14.81 14.65 -3.06 -0.04 -14.86 16 15 C -0.25 -6.42 5.41 -104.37 -0.56 -6.99 16 16 C -0.06 -1.26 8.21 -39.22 -0.32 -1.58 16 17 C -0.25 -5.47 10.03 -39.37 -0.39 -5.86 16 18 C -0.09 -2.15 10.01 -39.60 -0.40 -2.55 16 19 C -0.16 -4.04 8.65 -38.88 -0.34 -4.37 16 20 C 0.15 4.02 5.56 -106.54 -0.59 3.42 16 21 C -0.42 -11.78 7.73 -37.82 -0.29 -12.08 16 22 H 0.08 2.41 6.73 -52.49 -0.35 2.05 16 23 C 0.07 1.92 5.26 -17.30 -0.09 1.83 16 24 N -0.79 -20.87 10.86 55.56 0.60 -20.26 16 25 Si 0.92 19.85 29.57 -169.99 -5.03 14.83 16 26 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.28 7.16 -51.93 -0.37 0.91 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.79 7.84 -51.93 -0.41 0.39 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.89 6.97 -51.93 -0.36 0.53 16 41 H 0.09 1.37 7.33 -51.93 -0.38 0.98 16 42 H 0.09 1.88 5.94 -52.48 -0.31 1.57 16 43 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.12 3.25 6.26 -52.49 -0.33 2.92 16 46 H 0.28 6.73 8.29 -40.82 -0.34 6.39 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -33.92 375.79 -9.48 -43.40 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.72 Total: 5.98 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.77 Total: -6.01 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.13 Total: -32.48 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.76 Total: -31.38 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.92 -9.48 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601202826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.422 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds