Wall clock time and date at job start Tue Mar 31 2020 16:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47670 * 2 1 4 4 O 1.45201 * 109.47191 * 120.00053 * 2 1 3 5 5 C 1.34226 * 116.99954 * 149.99313 * 4 2 1 6 6 O 1.20824 * 120.00406 * 0.02562 * 5 4 2 7 7 C 1.50710 * 119.99606 * 179.97438 * 5 4 2 8 8 H 1.08995 * 109.99704 * 59.65124 * 7 5 4 9 9 C 1.54321 * 109.88392 * 298.55023 * 7 5 4 10 10 C 1.55153 * 103.10006 * 218.48011 * 9 7 5 11 11 C 1.54910 * 101.58478 * 35.41571 * 10 9 7 12 12 N 1.47322 * 110.06209 * 180.81745 * 7 5 4 13 13 C 1.34780 * 125.61306 * 298.32621 * 12 7 5 14 14 O 1.21605 * 120.00183 * 354.52090 * 13 12 7 15 15 C 1.47432 * 119.99932 * 174.53588 * 13 12 7 16 16 C 1.39229 * 120.28012 * 321.65793 * 15 13 12 17 17 C 1.38218 * 120.09479 * 179.72145 * 16 15 13 18 18 C 1.38827 * 120.67263 * 0.56497 * 17 16 15 19 19 C 1.37596 * 120.57256 * 359.71070 * 18 17 16 20 20 C 1.40715 * 119.88026 * 0.02562 * 19 18 17 21 21 C 1.40886 * 120.32607 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00073 * 150.47154 * 21 20 19 23 23 C 1.40270 * 120.00096 * 330.46458 * 21 20 19 24 24 N 1.30634 * 119.99909 * 349.73067 * 23 21 20 25 25 Si 1.86799 * 119.99981 * 169.73490 * 23 21 20 26 26 H 1.48503 * 109.47320 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47494 * 119.99936 * 25 23 21 28 28 H 1.48500 * 109.47043 * 239.99960 * 25 23 21 29 29 H 1.09007 * 109.47194 * 300.00382 * 1 2 3 30 30 H 1.09004 * 109.47172 * 59.99755 * 1 2 3 31 31 H 1.08994 * 109.47739 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47019 * 239.99383 * 2 1 3 33 33 H 1.09003 * 109.46772 * 59.99937 * 3 2 1 34 34 H 1.08995 * 109.47146 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47023 * 300.00336 * 3 2 1 36 36 H 1.08993 * 110.72008 * 100.02811 * 9 7 5 37 37 H 1.09001 * 110.72013 * 336.92889 * 9 7 5 38 38 H 1.09006 * 111.00724 * 153.48494 * 10 9 7 39 39 H 1.09002 * 111.00535 * 277.29891 * 10 9 7 40 40 H 1.09000 * 110.36971 * 81.82589 * 11 10 9 41 41 H 1.09000 * 110.36629 * 204.15776 * 11 10 9 42 42 H 1.08008 * 119.94910 * 0.02562 * 16 15 13 43 43 H 1.07999 * 119.66737 * 180.25330 * 17 16 15 44 44 H 1.07995 * 119.71676 * 179.74188 * 18 17 16 45 45 H 1.07996 * 120.06549 * 180.02562 * 19 18 17 46 46 H 0.97002 * 119.99575 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3171 1.0850 6 8 3.8018 -1.2992 0.0412 7 6 3.7599 -2.0489 2.2747 8 1 3.0703 -2.8299 2.5947 9 6 4.0048 -1.0583 3.4323 10 6 5.3363 -1.5614 4.0499 11 6 6.0990 -2.0465 2.7919 12 7 5.0629 -2.6430 1.9292 13 6 5.2733 -3.5747 0.9783 14 8 4.3298 -4.0668 0.3898 15 6 6.6475 -3.9975 0.6518 16 6 7.6817 -3.0657 0.6277 17 6 8.9695 -3.4674 0.3267 18 6 9.2470 -4.7958 0.0344 19 6 8.2450 -5.7388 0.0448 20 6 6.9262 -5.3569 0.3533 21 6 5.8931 -6.3147 0.3672 22 1 5.0437 -6.1833 1.0211 23 6 5.9677 -7.4389 -0.4684 24 7 6.8831 -7.5020 -1.3983 25 14 4.7580 -8.8457 -0.2516 26 1 3.8284 -8.5319 0.8632 27 1 3.9838 -9.0306 -1.5052 28 1 5.5005 -10.0934 0.0602 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4423 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 3.1971 -1.1107 4.1622 37 1 4.1151 -0.0421 3.0536 38 1 5.8708 -0.7485 4.5415 39 1 5.1594 -2.3847 4.7420 40 1 6.5738 -1.2047 2.2879 41 1 6.8427 -2.7952 3.0644 42 1 7.4781 -2.0284 0.8492 43 1 9.7673 -2.7395 0.3140 44 1 10.2582 -5.0919 -0.2027 45 1 8.4701 -6.7700 -0.1835 46 1 6.9348 -8.2796 -1.9758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601202826.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:56 Heat of formation + Delta-G solvation = -119.407476 kcal Electronic energy + Delta-G solvation = -29323.227927 eV Core-core repulsion = 25369.759597 eV Total energy + Delta-G solvation = -3953.468330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.06082 -40.73758 -39.08502 -38.00607 -37.69792 -35.65496 -34.24445 -32.92441 -31.80608 -31.31432 -30.40537 -28.25042 -27.41961 -25.69906 -24.39933 -22.98592 -22.75712 -22.26122 -21.53921 -20.36296 -19.17328 -19.08531 -18.14363 -17.54326 -17.32235 -17.03769 -16.90061 -16.15576 -15.86729 -15.47586 -15.28587 -15.00154 -14.69713 -14.49367 -14.44349 -14.22901 -14.05861 -13.78804 -13.56107 -13.38663 -13.29386 -13.20297 -12.91638 -12.89868 -12.82109 -12.70322 -12.66336 -12.27863 -12.10248 -11.97643 -11.89099 -11.78589 -11.59899 -11.50931 -11.36255 -11.17404 -10.55833 -9.75062 -9.40166 -9.32537 -8.70698 -6.42334 0.55354 0.98084 1.12063 1.28928 1.43610 1.44396 1.45439 2.08099 2.16153 2.29328 2.70249 3.42553 3.46298 3.64669 3.75562 3.78589 3.90251 4.01425 4.08653 4.16205 4.24708 4.33781 4.51859 4.60163 4.62920 4.71832 4.74346 4.77904 4.79387 4.82300 4.83941 4.92127 5.05826 5.06550 5.08917 5.16683 5.21659 5.28949 5.31816 5.39122 5.45259 5.57912 5.83910 5.98693 6.07861 6.26851 6.49805 6.64289 6.71731 6.84122 6.92164 7.47024 8.25163 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004141 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.653710 B = 6759.548060 C = 7884.949181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 C -0.159 4.159 4 O -0.348 6.348 5 C 0.450 3.550 6 O -0.532 6.532 7 C 0.137 3.863 8 H 0.105 0.895 9 C -0.101 4.101 10 C -0.116 4.116 11 C 0.092 3.908 12 N -0.614 5.614 13 C 0.594 3.406 14 O -0.579 6.579 15 C -0.272 4.272 16 C -0.055 4.055 17 C -0.237 4.237 18 C -0.090 4.090 19 C -0.181 4.181 20 C 0.115 3.885 21 C -0.460 4.460 22 H 0.060 0.940 23 C 0.033 3.967 24 N -0.819 5.819 25 Si 0.980 3.020 26 H -0.268 1.268 27 H -0.269 1.269 28 H -0.247 1.247 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 15.322 11.149 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 C -0.216 4.216 4 O -0.265 6.265 5 C 0.293 3.707 6 O -0.420 6.420 7 C 0.031 3.969 8 H 0.123 0.877 9 C -0.139 4.139 10 C -0.154 4.154 11 C -0.029 4.029 12 N -0.350 5.350 13 C 0.388 3.612 14 O -0.459 6.459 15 C -0.277 4.277 16 C -0.073 4.073 17 C -0.256 4.256 18 C -0.108 4.108 19 C -0.201 4.201 20 C 0.112 3.888 21 C -0.489 4.489 22 H 0.078 0.922 23 C -0.182 4.182 24 N -0.445 5.445 25 Si 0.801 3.199 26 H -0.192 1.192 27 H -0.194 1.194 28 H -0.171 1.171 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.107 0.893 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.137 0.863 43 H 0.149 0.851 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.849 14.880 10.239 19.317 hybrid contribution -0.396 -0.998 -1.072 1.517 sum -7.245 13.882 9.166 18.145 Atomic orbital electron populations 1.21885 0.89747 1.03208 1.04904 1.23026 0.96974 0.93316 0.85653 1.22153 1.00715 0.93884 1.04890 1.86525 1.35592 1.62628 1.41713 1.24605 0.79486 0.76144 0.90511 1.90680 1.60645 1.58758 1.31879 1.21468 0.87470 0.96674 0.91279 0.87718 1.22660 1.00716 0.96651 0.93847 1.22880 0.94352 1.02959 0.95194 1.22691 0.91165 0.97999 0.91051 1.48495 1.08545 1.40463 1.37482 1.18215 0.89296 0.76456 0.77199 1.90643 1.45747 1.56650 1.52868 1.19680 0.92083 0.94898 1.21007 1.21012 0.92281 0.97300 0.96717 1.20752 0.96256 0.96130 1.12427 1.21173 0.98345 0.93686 0.97610 1.21365 0.92177 0.99491 1.07045 1.17782 0.93325 0.90504 0.87186 1.19716 1.04651 1.04365 1.20182 0.92184 1.26763 0.97734 1.00858 0.92839 1.69742 1.31512 1.29633 1.13646 0.85197 0.78275 0.77321 0.79106 1.19239 1.19385 1.17079 0.89559 0.88288 0.92720 0.93265 0.89433 0.94208 0.88827 0.85475 0.89348 0.85691 0.89223 0.91059 0.90420 0.86330 0.85069 0.85971 0.87258 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.57 71.98 0.69 -1.78 16 2 C 0.06 1.65 3.18 30.59 0.10 1.75 16 3 C -0.16 -3.12 9.55 71.98 0.69 -2.43 16 4 O -0.35 -10.18 9.84 -51.38 -0.51 -10.69 16 5 C 0.45 16.33 6.81 71.24 0.49 16.81 16 6 O -0.53 -24.44 14.45 25.70 0.37 -24.07 16 7 C 0.14 4.32 3.35 44.54 0.15 4.47 16 8 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 9 C -0.10 -1.82 6.43 31.78 0.20 -1.61 16 10 C -0.12 -1.93 7.09 31.99 0.23 -1.71 16 11 C 0.09 2.57 5.25 86.86 0.46 3.03 16 12 N -0.61 -23.84 2.85 -795.29 -2.27 -26.11 16 13 C 0.59 30.85 6.08 86.66 0.53 31.37 16 14 O -0.58 -35.16 14.65 3.92 0.06 -35.11 16 15 C -0.27 -14.42 5.41 -19.70 -0.11 -14.53 16 16 C -0.05 -2.44 8.21 22.50 0.18 -2.26 16 17 C -0.24 -9.91 10.03 22.41 0.22 -9.68 16 18 C -0.09 -4.06 10.01 22.26 0.22 -3.84 16 19 C -0.18 -9.72 8.65 22.72 0.20 -9.53 16 20 C 0.12 6.68 5.56 -21.11 -0.12 6.56 16 21 C -0.46 -27.56 7.73 23.41 0.18 -27.38 16 22 H 0.06 3.75 6.73 -2.91 -0.02 3.73 16 23 C 0.03 1.82 5.26 85.37 0.45 2.27 16 24 N -0.82 -45.36 10.86 21.88 0.24 -45.12 16 25 Si 0.98 42.67 29.57 68.60 2.03 44.70 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 28 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.59 7.16 -2.39 -0.02 1.58 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.46 7.84 -2.39 -0.02 1.44 16 38 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.87 6.97 -2.39 -0.02 1.85 16 41 H 0.08 2.33 7.33 -2.39 -0.02 2.31 16 42 H 0.12 4.61 5.94 -2.91 -0.02 4.60 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 44 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 45 H 0.11 6.06 6.26 -2.91 -0.02 6.04 16 46 H 0.29 14.40 8.29 -92.71 -0.77 13.63 16 Total: -1.00 -82.61 375.79 5.66 -76.95 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.99 Total: 27.93 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.76 Total: -8.48 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -2.03 Total: -71.23 kcal Atomic # 8 Polarization: -69.79 SS G_CDS: -0.08 Total: -69.87 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -82.61 5.66 -76.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601202826.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.457 kcal (2) G-P(sol) polarization free energy of solvation -82.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds