Wall clock time and date at job start Tue Mar 31 2020 17:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.43913 * 2 1 4 4 O 1.44559 * 110.39124 * 122.35905 * 2 1 3 5 5 C 1.44478 * 105.36535 * 158.78452 * 4 2 1 6 6 C 1.54607 * 104.82355 * 319.84338 * 5 4 2 7 7 C 1.53921 * 110.39534 * 237.64266 * 2 1 3 8 8 C 1.52642 * 110.20598 * 335.98939 * 7 2 1 9 9 N 1.47285 * 108.42808 * 173.29272 * 8 7 2 10 10 C 1.34775 * 121.05023 * 130.44163 * 9 8 7 11 11 O 1.21611 * 120.00013 * 354.66422 * 10 9 8 12 12 C 1.47426 * 120.00019 * 174.66457 * 10 9 8 13 13 C 1.39221 * 120.28293 * 311.87229 * 12 10 9 14 14 C 1.38224 * 120.09378 * 179.74116 * 13 12 10 15 15 C 1.38828 * 120.67180 * 0.56140 * 14 13 12 16 16 C 1.37590 * 120.57201 * 359.69586 * 15 14 13 17 17 C 1.40703 * 119.88501 * 0.02562 * 16 15 14 18 18 C 1.40887 * 120.33160 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00386 * 151.61271 * 18 17 16 20 20 C 1.40271 * 119.99896 * 331.60781 * 18 17 16 21 21 N 1.30628 * 119.99941 * 349.30816 * 20 18 17 22 22 Si 1.86796 * 120.00005 * 169.31273 * 20 18 17 23 23 H 1.48497 * 109.47295 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47279 * 120.00098 * 22 20 18 25 25 H 1.48506 * 109.47070 * 239.99673 * 22 20 18 26 26 C 1.47172 * 117.88750 * 310.51666 * 9 8 7 27 27 C 1.53282 * 108.55776 * 50.97772 * 26 9 8 28 28 O 1.42214 * 110.47749 * 98.81119 * 7 2 1 29 29 H 1.09002 * 109.46587 * 182.35769 * 1 2 3 30 30 H 1.08996 * 109.47271 * 302.35552 * 1 2 3 31 31 H 1.09002 * 109.47114 * 62.36199 * 1 2 3 32 32 H 1.08998 * 110.36382 * 201.00657 * 5 4 2 33 33 H 1.09003 * 110.46267 * 78.73401 * 5 4 2 34 34 H 1.08999 * 110.54499 * 265.31231 * 6 5 4 35 35 H 1.08994 * 110.54429 * 142.50075 * 6 5 4 36 36 H 1.09008 * 109.68133 * 293.03746 * 8 7 2 37 37 H 1.09002 * 109.68326 * 53.54363 * 8 7 2 38 38 H 1.08005 * 119.95383 * 0.02562 * 13 12 10 39 39 H 1.07995 * 119.66423 * 180.27350 * 14 13 12 40 40 H 1.08005 * 119.71230 * 179.71193 * 15 14 13 41 41 H 1.08011 * 120.06130 * 180.02562 * 16 15 14 42 42 H 0.97006 * 120.00181 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.59782 * 291.26013 * 26 9 8 44 44 H 1.09007 * 109.78154 * 170.79795 * 26 9 8 45 45 H 1.08998 * 109.51135 * 187.27026 * 27 26 9 46 46 H 1.08995 * 109.55640 * 67.14151 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7252 1.1446 5 6 3.3844 -1.1009 0.7956 6 6 3.3080 -1.5152 -0.6920 7 6 2.0664 -0.7721 -1.2187 8 6 1.0236 -1.7731 -1.7094 9 7 1.5076 -2.3717 -2.9651 10 6 1.5115 -3.7078 -3.1420 11 8 1.2034 -4.4436 -2.2240 12 6 1.8892 -4.2773 -4.4482 13 6 1.3296 -3.7768 -5.6206 14 6 1.6906 -4.3101 -6.8437 15 6 2.6023 -5.3542 -6.9196 16 6 3.1684 -5.8735 -5.7781 17 6 2.8223 -5.3447 -4.5210 18 6 3.3966 -5.8688 -3.3461 19 1 3.5187 -5.2391 -2.4772 20 6 3.8096 -7.2087 -3.3047 21 7 3.4773 -8.0247 -4.2692 22 14 4.8347 -7.8262 -1.8704 23 1 5.0744 -6.7127 -0.9177 24 1 4.1094 -8.9223 -1.1792 25 1 6.1358 -8.3345 -2.3745 26 6 1.9883 -1.4647 -4.0197 27 6 3.0088 -0.4998 -3.4054 28 8 2.4311 0.1285 -2.2572 29 1 -0.3632 -1.0268 0.0423 30 1 -0.3633 0.5499 0.8681 31 1 -0.3633 0.4767 -0.9104 32 1 3.7144 -1.9409 1.4069 33 1 4.0596 -0.2542 0.9196 34 1 3.1756 -2.5933 -0.7825 35 1 4.2019 -1.1922 -1.2253 36 1 0.8829 -2.5532 -0.9611 37 1 0.0782 -1.2607 -1.8875 38 1 0.6158 -2.9675 -5.5748 39 1 1.2555 -3.9135 -7.7491 40 1 2.8698 -5.7623 -7.8832 41 1 3.8771 -6.6856 -5.8468 42 1 3.7627 -8.9514 -4.2404 43 1 1.1495 -0.9001 -4.4267 44 1 2.4618 -2.0412 -4.8145 45 1 3.2788 0.2599 -4.1389 46 1 3.9003 -1.0522 -3.1084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601539682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:58 Heat of formation + Delta-G solvation = -90.974189 kcal Electronic energy + Delta-G solvation = -30152.148810 eV Core-core repulsion = 26199.913440 eV Total energy + Delta-G solvation = -3952.235370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.92061 -38.98317 -37.59663 -36.74653 -34.36030 -33.71737 -32.85299 -31.45743 -30.13644 -29.61540 -28.98086 -26.66433 -25.45985 -24.99850 -23.46572 -22.05044 -21.67801 -21.02481 -19.59365 -18.71494 -17.36423 -17.09545 -16.66137 -15.94748 -15.77305 -15.63412 -15.27758 -15.20809 -14.65666 -14.40130 -14.19693 -13.92461 -13.85348 -13.33838 -13.00611 -12.76262 -12.58237 -12.39586 -12.33354 -12.19572 -12.10178 -11.72624 -11.54482 -11.35826 -11.22072 -11.16765 -11.01288 -10.90809 -10.84278 -10.53542 -10.43721 -10.00178 -9.95616 -9.80933 -9.70211 -9.34615 -8.76504 -8.07681 -7.59013 -7.51813 -6.87194 -4.50511 2.40668 2.73815 3.02955 3.09578 3.14380 3.35461 3.56677 3.82168 3.84184 3.87573 4.46666 4.53467 4.66354 4.74985 5.03062 5.04740 5.12292 5.21346 5.23377 5.38178 5.46637 5.49659 5.51851 5.60376 5.70530 5.72140 5.78068 5.87151 5.90893 5.99392 6.03317 6.06361 6.09156 6.14517 6.28346 6.49532 6.63243 6.90441 6.94855 7.04728 7.15669 7.20331 7.38250 7.61000 7.79087 7.90606 8.02808 8.14215 8.48085 8.71259 8.77851 9.12891 10.05192 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.004835 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.091232 B = 5789.526153 C = 7266.759507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.090 3.910 3 H 0.081 0.919 4 O -0.366 6.366 5 C 0.050 3.950 6 C -0.180 4.180 7 C 0.080 3.920 8 C 0.097 3.903 9 N -0.625 5.625 10 C 0.585 3.415 11 O -0.535 6.535 12 C -0.258 4.258 13 C -0.060 4.060 14 C -0.246 4.246 15 C -0.094 4.094 16 C -0.155 4.155 17 C 0.145 3.855 18 C -0.426 4.426 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.786 5.786 22 Si 0.913 3.087 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.076 3.924 27 C 0.045 3.955 28 O -0.368 6.368 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.104 0.896 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 13.446 3.161 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.099 0.901 4 O -0.285 6.285 5 C -0.027 4.027 6 C -0.218 4.218 7 C 0.039 3.961 8 C -0.026 4.026 9 N -0.362 5.362 10 C 0.378 3.622 11 O -0.411 6.411 12 C -0.263 4.263 13 C -0.079 4.079 14 C -0.266 4.266 15 C -0.113 4.113 16 C -0.174 4.174 17 C 0.141 3.859 18 C -0.454 4.454 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.411 5.411 22 Si 0.737 3.263 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.048 4.048 27 C -0.032 4.032 28 O -0.287 6.287 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.166 12.897 3.814 13.450 hybrid contribution 0.588 -0.611 0.151 0.861 sum 0.754 12.287 3.965 12.933 Atomic orbital electron populations 1.21918 0.92587 1.03533 1.02660 1.22684 0.95510 0.95500 0.83115 0.90132 1.89195 1.27816 1.74434 1.37102 1.23363 0.84478 0.99841 0.95008 1.23498 0.98766 1.02882 0.96619 1.22700 0.94429 0.90292 0.88702 1.22142 0.95727 0.96337 0.88389 1.48261 1.66252 1.06180 1.15497 1.18584 0.75155 0.79752 0.88670 1.90694 1.48240 1.58481 1.43681 1.19356 1.08704 1.07730 0.90475 1.20605 0.97560 0.97489 0.92204 1.20276 1.07008 1.03620 0.95682 1.20813 0.97151 0.96114 0.97196 1.21426 1.02741 1.02194 0.91083 1.17395 0.87315 0.87846 0.93298 1.19648 1.31963 0.95318 0.98520 0.90204 1.25993 0.94230 0.96864 0.97328 1.69701 1.34479 1.05729 1.31166 0.86161 0.79407 0.79546 0.81140 1.18286 1.19632 1.19629 1.22419 0.97825 0.92627 0.91883 1.23105 0.95710 0.96820 0.87601 1.87774 1.81335 1.33035 1.26556 0.91036 0.91575 0.90596 0.88787 0.92141 0.89128 0.89689 0.88020 0.91021 0.89028 0.89088 0.89092 0.85738 0.90580 0.91591 0.87201 0.87756 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.29 37.16 0.31 -1.32 16 2 C 0.09 1.13 3.59 -26.25 -0.09 1.04 16 3 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 4 O -0.37 -5.14 11.35 -35.23 -0.40 -5.54 16 5 C 0.05 0.63 7.65 38.00 0.29 0.92 16 6 C -0.18 -2.58 5.78 -25.37 -0.15 -2.73 16 7 C 0.08 1.12 0.97 -89.81 -0.09 1.03 16 8 C 0.10 1.55 3.92 -3.80 -0.01 1.54 16 9 N -0.63 -11.28 2.91 -173.82 -0.51 -11.79 16 10 C 0.59 13.35 6.56 -12.52 -0.08 13.27 16 11 O -0.53 -14.05 15.21 5.27 0.08 -13.97 16 12 C -0.26 -6.11 4.89 -104.37 -0.51 -6.62 16 13 C -0.06 -1.25 7.59 -39.22 -0.30 -1.55 16 14 C -0.25 -5.09 10.03 -39.37 -0.39 -5.48 16 15 C -0.09 -2.06 10.01 -39.60 -0.40 -2.46 16 16 C -0.16 -3.83 8.66 -38.89 -0.34 -4.17 16 17 C 0.15 3.76 5.58 -106.54 -0.59 3.17 16 18 C -0.43 -11.31 7.89 -37.82 -0.30 -11.61 16 19 H 0.08 2.16 6.97 -52.49 -0.37 1.80 16 20 C 0.07 1.88 5.26 -17.30 -0.09 1.79 16 21 N -0.79 -19.96 10.81 55.56 0.60 -19.36 16 22 Si 0.91 19.04 29.57 -169.99 -5.03 14.02 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 26 C 0.08 1.13 5.37 -3.53 -0.02 1.11 16 27 C 0.04 0.57 6.70 37.30 0.25 0.82 16 28 O -0.37 -5.02 10.19 -35.23 -0.36 -5.38 16 29 H 0.07 0.84 6.75 -51.93 -0.35 0.49 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.57 7.67 -51.93 -0.40 1.17 16 35 H 0.08 1.15 6.62 -51.93 -0.34 0.80 16 36 H 0.10 1.85 6.86 -51.92 -0.36 1.49 16 37 H 0.07 1.03 6.20 -51.93 -0.32 0.71 16 38 H 0.09 1.69 7.30 -52.48 -0.38 1.31 16 39 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.12 3.16 6.19 -52.48 -0.32 2.83 16 42 H 0.28 6.49 8.29 -40.82 -0.34 6.16 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.77 5.33 -51.93 -0.28 1.49 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.81 6.50 -51.93 -0.34 0.47 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -29.71 357.36 -9.11 -38.82 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.37 Total: 9.07 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.51 Total: -11.25 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.09 Total: -31.14 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.68 Total: -24.90 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.71 -9.11 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601539682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.156 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds