Wall clock time and date at job start Tue Mar 31 2020 17:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.43913 * 2 1 4 4 O 1.44559 * 110.39124 * 122.35905 * 2 1 3 5 5 C 1.44478 * 105.36535 * 158.78452 * 4 2 1 6 6 C 1.54607 * 104.82355 * 319.84338 * 5 4 2 7 7 C 1.53921 * 110.39534 * 237.64266 * 2 1 3 8 8 C 1.52642 * 110.20598 * 335.98939 * 7 2 1 9 9 N 1.47285 * 108.42808 * 173.29272 * 8 7 2 10 10 C 1.34775 * 121.05023 * 130.44163 * 9 8 7 11 11 O 1.21611 * 120.00013 * 354.66422 * 10 9 8 12 12 C 1.47426 * 120.00019 * 174.66457 * 10 9 8 13 13 C 1.39221 * 120.28293 * 311.87229 * 12 10 9 14 14 C 1.38224 * 120.09378 * 179.74116 * 13 12 10 15 15 C 1.38828 * 120.67180 * 0.56140 * 14 13 12 16 16 C 1.37590 * 120.57201 * 359.69586 * 15 14 13 17 17 C 1.40703 * 119.88501 * 0.02562 * 16 15 14 18 18 C 1.40887 * 120.33160 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00386 * 151.61271 * 18 17 16 20 20 C 1.40271 * 119.99896 * 331.60781 * 18 17 16 21 21 N 1.30628 * 119.99941 * 349.30816 * 20 18 17 22 22 Si 1.86796 * 120.00005 * 169.31273 * 20 18 17 23 23 H 1.48497 * 109.47295 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47279 * 120.00098 * 22 20 18 25 25 H 1.48506 * 109.47070 * 239.99673 * 22 20 18 26 26 C 1.47172 * 117.88750 * 310.51666 * 9 8 7 27 27 C 1.53282 * 108.55776 * 50.97772 * 26 9 8 28 28 O 1.42214 * 110.47749 * 98.81119 * 7 2 1 29 29 H 1.09002 * 109.46587 * 182.35769 * 1 2 3 30 30 H 1.08996 * 109.47271 * 302.35552 * 1 2 3 31 31 H 1.09002 * 109.47114 * 62.36199 * 1 2 3 32 32 H 1.08998 * 110.36382 * 201.00657 * 5 4 2 33 33 H 1.09003 * 110.46267 * 78.73401 * 5 4 2 34 34 H 1.08999 * 110.54499 * 265.31231 * 6 5 4 35 35 H 1.08994 * 110.54429 * 142.50075 * 6 5 4 36 36 H 1.09008 * 109.68133 * 293.03746 * 8 7 2 37 37 H 1.09002 * 109.68326 * 53.54363 * 8 7 2 38 38 H 1.08005 * 119.95383 * 0.02562 * 13 12 10 39 39 H 1.07995 * 119.66423 * 180.27350 * 14 13 12 40 40 H 1.08005 * 119.71230 * 179.71193 * 15 14 13 41 41 H 1.08011 * 120.06130 * 180.02562 * 16 15 14 42 42 H 0.97006 * 120.00181 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.59782 * 291.26013 * 26 9 8 44 44 H 1.09007 * 109.78154 * 170.79795 * 26 9 8 45 45 H 1.08998 * 109.51135 * 187.27026 * 27 26 9 46 46 H 1.08995 * 109.55640 * 67.14151 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 8 2.0337 -0.7252 1.1446 5 6 3.3844 -1.1009 0.7956 6 6 3.3080 -1.5152 -0.6920 7 6 2.0664 -0.7721 -1.2187 8 6 1.0236 -1.7731 -1.7094 9 7 1.5076 -2.3717 -2.9651 10 6 1.5115 -3.7078 -3.1420 11 8 1.2034 -4.4436 -2.2240 12 6 1.8892 -4.2773 -4.4482 13 6 1.3296 -3.7768 -5.6206 14 6 1.6906 -4.3101 -6.8437 15 6 2.6023 -5.3542 -6.9196 16 6 3.1684 -5.8735 -5.7781 17 6 2.8223 -5.3447 -4.5210 18 6 3.3966 -5.8688 -3.3461 19 1 3.5187 -5.2391 -2.4772 20 6 3.8096 -7.2087 -3.3047 21 7 3.4773 -8.0247 -4.2692 22 14 4.8347 -7.8262 -1.8704 23 1 5.0744 -6.7127 -0.9177 24 1 4.1094 -8.9223 -1.1792 25 1 6.1358 -8.3345 -2.3745 26 6 1.9883 -1.4647 -4.0197 27 6 3.0088 -0.4998 -3.4054 28 8 2.4311 0.1285 -2.2572 29 1 -0.3632 -1.0268 0.0423 30 1 -0.3633 0.5499 0.8681 31 1 -0.3633 0.4767 -0.9104 32 1 3.7144 -1.9409 1.4069 33 1 4.0596 -0.2542 0.9196 34 1 3.1756 -2.5933 -0.7825 35 1 4.2019 -1.1922 -1.2253 36 1 0.8829 -2.5532 -0.9611 37 1 0.0782 -1.2607 -1.8875 38 1 0.6158 -2.9675 -5.5748 39 1 1.2555 -3.9135 -7.7491 40 1 2.8698 -5.7623 -7.8832 41 1 3.8771 -6.6856 -5.8468 42 1 3.7627 -8.9514 -4.2404 43 1 1.1495 -0.9001 -4.4267 44 1 2.4618 -2.0412 -4.8145 45 1 3.2788 0.2599 -4.1389 46 1 3.9003 -1.0522 -3.1084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601539682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:57 Heat of formation + Delta-G solvation = -109.497316 kcal Electronic energy + Delta-G solvation = -30152.952033 eV Core-core repulsion = 26199.913440 eV Total energy + Delta-G solvation = -3953.038594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14052 -40.54261 -38.90789 -38.41269 -35.94416 -35.45408 -33.96025 -32.52371 -31.91490 -31.37424 -30.15771 -28.10321 -27.11253 -26.18217 -24.72777 -23.59606 -22.83634 -22.78373 -20.95997 -20.12237 -19.16988 -18.36321 -18.14211 -17.39447 -17.11047 -16.88570 -16.70707 -16.41308 -16.12484 -15.99111 -15.56712 -15.29677 -15.04284 -14.81461 -14.50807 -14.43601 -14.09020 -13.77356 -13.57229 -13.44882 -13.40889 -13.19150 -12.99475 -12.88217 -12.79445 -12.52519 -12.39094 -12.26428 -12.13045 -11.97512 -11.82375 -11.65147 -11.50097 -11.18888 -11.11299 -10.85405 -10.52849 -9.57440 -9.33878 -9.32345 -8.71451 -6.43977 0.61009 0.98152 1.28397 1.42208 1.43767 1.89455 2.12841 2.14379 2.45598 2.68597 2.80100 3.34638 3.47496 3.63560 3.70526 3.85234 3.98198 4.05615 4.07871 4.14049 4.26443 4.32125 4.37485 4.44361 4.49756 4.55335 4.57505 4.62440 4.72311 4.75827 4.82243 4.84016 4.87982 4.94006 4.97186 5.05059 5.21108 5.22269 5.32509 5.51453 5.58894 5.62829 5.84361 5.97548 6.09243 6.09459 6.24716 6.43825 6.62080 6.83415 6.91538 7.40698 8.23321 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.004835 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.091232 B = 5789.526153 C = 7266.759507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.091 3.909 3 H 0.099 0.901 4 O -0.383 6.383 5 C 0.052 3.948 6 C -0.181 4.181 7 C 0.084 3.916 8 C 0.097 3.903 9 N -0.618 5.618 10 C 0.580 3.420 11 O -0.586 6.586 12 C -0.270 4.270 13 C -0.056 4.056 14 C -0.232 4.232 15 C -0.092 4.092 16 C -0.181 4.181 17 C 0.115 3.885 18 C -0.463 4.463 19 H 0.055 0.945 20 C 0.037 3.963 21 N -0.816 5.816 22 Si 0.974 3.026 23 H -0.269 1.269 24 H -0.268 1.268 25 H -0.249 1.249 26 C 0.070 3.930 27 C 0.047 3.953 28 O -0.361 6.361 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.291 0.709 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.144 0.856 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 16.347 1.975 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.117 0.883 4 O -0.303 6.303 5 C -0.024 4.024 6 C -0.219 4.219 7 C 0.043 3.957 8 C -0.025 4.025 9 N -0.352 5.352 10 C 0.373 3.627 11 O -0.466 6.466 12 C -0.275 4.275 13 C -0.074 4.074 14 C -0.251 4.251 15 C -0.110 4.110 16 C -0.200 4.200 17 C 0.112 3.888 18 C -0.492 4.492 19 H 0.073 0.927 20 C -0.179 4.179 21 N -0.442 5.442 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.193 1.193 25 H -0.173 1.173 26 C -0.052 4.052 27 C -0.030 4.030 28 O -0.279 6.279 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.162 0.838 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.192 15.855 2.594 16.066 hybrid contribution 0.599 -1.364 0.383 1.538 sum 0.407 14.491 2.977 14.799 Atomic orbital electron populations 1.21948 0.91360 1.03034 1.04269 1.22841 0.96536 0.95674 0.81592 0.88307 1.89182 1.28475 1.74829 1.37825 1.23439 0.84572 1.00963 0.93467 1.23441 0.99526 1.00373 0.98539 1.22647 0.93440 0.90098 0.89520 1.22265 0.97530 0.95936 0.86813 1.48205 1.64889 1.05132 1.16978 1.18607 0.74899 0.81213 0.87990 1.90654 1.50784 1.60255 1.44902 1.19648 1.08332 1.07459 0.92063 1.20918 0.97303 0.97868 0.91327 1.20752 1.05304 1.02070 0.97006 1.21167 0.96487 0.95951 0.97410 1.21377 1.03907 1.02921 0.91832 1.17729 0.88321 0.89070 0.93697 1.19613 1.34956 0.96286 0.98371 0.92673 1.26671 0.94942 0.96481 0.99794 1.69726 1.35629 1.06216 1.32646 0.85286 0.78760 0.78504 0.77967 1.19345 1.19269 1.17319 1.22690 0.99332 0.92300 0.90879 1.23226 0.94353 0.97378 0.88016 1.87794 1.81161 1.32504 1.26449 0.92576 0.89956 0.89010 0.88698 0.89467 0.93292 0.88964 0.91093 0.88772 0.85898 0.85029 0.86251 0.87366 0.89828 0.88758 0.88350 0.83803 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.29 71.98 0.60 -2.33 16 2 C 0.09 2.12 3.59 30.91 0.11 2.23 16 3 H 0.10 1.98 8.08 -2.39 -0.02 1.96 16 4 O -0.38 -10.44 11.35 -148.98 -1.69 -12.13 16 5 C 0.05 1.28 7.65 72.53 0.55 1.84 16 6 C -0.18 -5.29 5.78 31.47 0.18 -5.11 16 7 C 0.08 2.27 0.97 -10.27 -0.01 2.26 16 8 C 0.10 3.11 3.92 86.11 0.34 3.45 16 9 N -0.62 -22.34 2.91 -822.08 -2.39 -24.73 16 10 C 0.58 27.51 6.56 86.66 0.57 28.08 16 11 O -0.59 -32.92 15.21 -4.07 -0.06 -32.98 16 12 C -0.27 -13.07 4.89 -19.70 -0.10 -13.16 16 13 C -0.06 -2.22 7.59 22.50 0.17 -2.05 16 14 C -0.23 -8.86 10.03 22.41 0.22 -8.63 16 15 C -0.09 -3.88 10.01 22.26 0.22 -3.66 16 16 C -0.18 -9.16 8.66 22.72 0.20 -8.97 16 17 C 0.12 6.24 5.58 -21.11 -0.12 6.13 16 18 C -0.46 -26.32 7.89 23.41 0.18 -26.14 16 19 H 0.06 3.28 6.97 -2.91 -0.02 3.26 16 20 C 0.04 1.94 5.26 85.37 0.45 2.39 16 21 N -0.82 -43.34 10.81 21.88 0.24 -43.11 16 22 Si 0.97 41.03 29.57 68.60 2.03 43.06 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 26 C 0.07 1.93 5.37 86.35 0.46 2.40 16 27 C 0.05 1.08 6.70 72.08 0.48 1.57 16 28 O -0.36 -8.80 10.19 -148.98 -1.52 -10.31 16 29 H 0.06 1.28 6.75 -2.39 -0.02 1.26 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.50 7.69 -2.39 -0.02 1.49 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.84 7.67 -2.39 -0.02 1.82 16 35 H 0.09 2.50 6.62 -2.39 -0.02 2.48 16 36 H 0.07 2.74 6.86 -2.38 -0.02 2.72 16 37 H 0.09 2.58 6.20 -2.39 -0.01 2.57 16 38 H 0.12 4.10 7.30 -2.91 -0.02 4.08 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.11 5.75 6.19 -2.91 -0.02 5.73 16 42 H 0.29 13.86 8.29 -92.70 -0.77 13.09 16 43 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.10 2.99 5.33 -2.38 -0.01 2.97 16 45 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.22 6.50 -2.39 -0.02 1.21 16 Total: -1.00 -69.53 357.36 2.13 -67.40 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 1.00 Total: 32.51 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 4.52 Total: -19.72 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -2.16 Total: -67.84 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -3.27 Total: -55.42 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -69.53 2.13 -67.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601539682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.095 kcal (2) G-P(sol) polarization free energy of solvation -69.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds