Wall clock time and date at job start Tue Mar 31 2020 17:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53155 * 1 3 3 H 1.08792 * 110.01021 * 2 1 4 4 O 1.43706 * 109.17681 * 121.14427 * 2 1 3 5 5 C 1.43684 * 110.33710 * 108.95999 * 4 2 1 6 6 C 1.54938 * 106.13430 * 346.07368 * 5 4 2 7 7 C 1.53466 * 110.32827 * 238.01558 * 2 1 3 8 8 C 1.52662 * 110.91654 * 155.69739 * 7 2 1 9 9 N 1.47232 * 108.82696 * 280.55410 * 8 7 2 10 10 C 1.34643 * 121.42832 * 129.03061 * 9 8 7 11 11 O 1.21614 * 119.99744 * 354.62144 * 10 9 8 12 12 C 1.47429 * 120.00200 * 174.61881 * 10 9 8 13 13 C 1.39229 * 120.28311 * 311.36796 * 12 10 9 14 14 C 1.38217 * 120.09168 * 179.74307 * 13 12 10 15 15 C 1.38831 * 120.67763 * 0.56338 * 14 13 12 16 16 C 1.37604 * 120.56671 * 359.69371 * 15 14 13 17 17 C 1.40705 * 119.88044 * 0.02562 * 16 15 14 18 18 C 1.40894 * 120.32061 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99429 * 151.78721 * 18 17 16 20 20 C 1.40265 * 120.00321 * 331.78730 * 18 17 16 21 21 N 1.30630 * 120.00450 * 349.17089 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 169.16482 * 20 18 17 23 23 H 1.48505 * 109.46837 * 60.00383 * 22 20 18 24 24 H 1.48493 * 109.47109 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47244 * 300.00473 * 22 20 18 26 26 C 1.47201 * 117.28632 * 308.79422 * 9 8 7 27 27 C 1.53203 * 108.17817 * 53.74070 * 26 9 8 28 28 O 1.41293 * 112.53100 * 29.24492 * 7 2 1 29 29 H 1.08992 * 109.47723 * 181.98504 * 1 2 3 30 30 H 1.09002 * 109.47432 * 301.98749 * 1 2 3 31 31 H 1.08998 * 109.47184 * 61.98406 * 1 2 3 32 32 H 1.09425 * 110.51804 * 105.55377 * 5 4 2 33 33 H 1.09427 * 110.53179 * 226.61688 * 5 4 2 34 34 H 1.08726 * 111.45181 * 273.81738 * 6 5 4 35 35 H 1.08881 * 111.20286 * 148.96971 * 6 5 4 36 36 H 1.09031 * 109.69541 * 40.50044 * 8 7 2 37 37 H 1.09076 * 109.58023 * 160.75819 * 8 7 2 38 38 H 1.08003 * 119.95433 * 0.02562 * 13 12 10 39 39 H 1.08003 * 119.65964 * 180.27572 * 14 13 12 40 40 H 1.08001 * 119.71769 * 179.72020 * 15 14 13 41 41 H 1.07997 * 120.05423 * 180.02562 * 16 15 14 42 42 H 0.96994 * 120.00404 * 180.02562 * 21 20 18 43 43 H 1.08951 * 109.67794 * 173.41762 * 26 9 8 44 44 H 1.08947 * 109.68064 * 294.06266 * 26 9 8 45 45 H 1.09408 * 109.00740 * 188.32310 * 27 26 9 46 46 H 1.09029 * 109.24901 * 69.78298 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5316 0.0000 0.0000 3 1 1.9038 1.0222 0.0000 4 8 2.0036 -0.7020 1.1617 5 6 2.5811 -1.9621 0.7833 6 6 2.1433 -2.2138 -0.6815 7 6 2.0647 -0.7623 -1.2206 8 6 3.4727 -0.2960 -1.5820 9 7 3.3773 0.9699 -2.3277 10 6 4.0989 2.0498 -1.9729 11 8 4.7746 2.0243 -0.9621 12 6 4.0699 3.2632 -2.8098 13 6 4.2558 3.1711 -4.1866 14 6 4.2226 4.3107 -4.9681 15 6 4.0163 5.5577 -4.3938 16 6 3.8348 5.6811 -3.0354 17 6 3.8583 4.5360 -2.2181 18 6 3.6729 4.6516 -0.8262 19 1 3.2449 3.8315 -0.2686 20 6 4.0441 5.8314 -0.1648 21 7 4.7500 6.7360 -0.7892 22 14 3.5288 6.1095 1.6091 23 1 4.0870 5.0294 2.4618 24 1 4.0425 7.4230 2.0737 25 1 2.0467 6.0972 1.7018 26 6 2.4641 1.0061 -3.4817 27 6 1.0813 0.5438 -3.0116 28 8 1.1850 -0.6999 -2.3245 29 1 -0.3634 -1.0269 0.0356 30 1 -0.3634 0.5444 0.8716 31 1 -0.3633 0.4827 -0.9072 32 1 3.6725 -1.9191 0.8494 33 1 2.2118 -2.7633 1.4306 34 1 1.1707 -2.6977 -0.7282 35 1 2.8954 -2.7835 -1.2249 36 1 4.0538 -0.1425 -0.6723 37 1 3.9594 -1.0497 -2.2024 38 1 4.4216 2.2074 -4.6451 39 1 4.3631 4.2307 -6.0359 40 1 3.9978 6.4384 -5.0186 41 1 3.6745 6.6552 -2.5974 42 1 5.0070 7.5517 -0.3317 43 1 2.4008 2.0230 -3.8676 44 1 2.8304 0.3382 -4.2606 45 1 0.4308 0.4227 -3.8829 46 1 0.6508 1.3038 -2.3590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601539684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:03 Heat of formation + Delta-G solvation = -92.699425 kcal Electronic energy + Delta-G solvation = -30307.708603 eV Core-core repulsion = 26355.398421 eV Total energy + Delta-G solvation = -3952.310182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93830 -38.98806 -37.58304 -36.76796 -34.44159 -33.71811 -32.58751 -31.20198 -30.19053 -29.67998 -29.12502 -27.13391 -25.47762 -24.69300 -23.22072 -22.02154 -21.75829 -21.01478 -19.95005 -18.72647 -17.34026 -16.92920 -16.71167 -16.37817 -15.69028 -15.42119 -15.19907 -14.99054 -14.64064 -14.46964 -14.30014 -13.77779 -13.63514 -13.38722 -12.99778 -12.85885 -12.65248 -12.46191 -12.33728 -12.16101 -12.07715 -11.74718 -11.59355 -11.28520 -11.25059 -11.18428 -11.13875 -11.02774 -10.84807 -10.53118 -10.38683 -10.00745 -9.81194 -9.70331 -9.49892 -9.31078 -8.78572 -8.13275 -7.58873 -7.51727 -6.85961 -4.49691 2.41410 2.76756 3.04214 3.09393 3.19420 3.25859 3.49817 3.81854 3.90043 3.95623 4.29325 4.54453 4.59240 4.72978 4.95858 5.01935 5.18435 5.21796 5.37819 5.43308 5.44616 5.49966 5.54367 5.57135 5.66744 5.71732 5.79063 5.83013 5.90072 5.96432 5.99785 6.07116 6.16646 6.27908 6.28232 6.49093 6.88470 6.92088 7.01695 7.04981 7.16315 7.28927 7.38524 7.61116 7.78814 7.91031 8.01976 8.13946 8.48652 8.71973 8.78390 9.11158 10.06151 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.005163 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.398737 B = 5421.614762 C = 6905.790570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.060 3.940 3 H 0.094 0.906 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.140 4.140 7 C 0.086 3.914 8 C 0.094 3.906 9 N -0.626 5.626 10 C 0.586 3.414 11 O -0.532 6.532 12 C -0.259 4.259 13 C -0.060 4.060 14 C -0.247 4.247 15 C -0.094 4.094 16 C -0.155 4.155 17 C 0.146 3.854 18 C -0.426 4.426 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.786 5.786 22 Si 0.912 3.088 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.262 1.262 26 C 0.073 3.927 27 C 0.046 3.954 28 O -0.360 6.360 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 -12.140 -2.592 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.002 3.998 3 H 0.111 0.889 4 O -0.291 6.291 5 C -0.027 4.027 6 C -0.178 4.178 7 C 0.045 3.955 8 C -0.029 4.029 9 N -0.362 5.362 10 C 0.379 3.621 11 O -0.408 6.408 12 C -0.264 4.264 13 C -0.079 4.079 14 C -0.266 4.266 15 C -0.113 4.113 16 C -0.174 4.174 17 C 0.142 3.858 18 C -0.454 4.454 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.410 5.410 22 Si 0.736 3.264 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.050 4.050 27 C -0.031 4.031 28 O -0.278 6.278 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.886 -11.961 -1.823 13.922 hybrid contribution 0.123 0.322 0.421 0.544 sum -6.763 -11.639 -1.402 13.534 Atomic orbital electron populations 1.22082 0.94577 1.02352 1.02240 1.23113 0.94963 0.97131 0.84564 0.88858 1.88537 1.79113 1.31292 1.30126 1.23394 0.98461 0.86809 0.94048 1.23175 1.03656 0.95110 0.95858 1.22588 0.90266 0.95695 0.86967 1.22005 0.95439 0.86566 0.98922 1.48206 1.45081 1.11663 1.31281 1.18571 0.77465 0.81733 0.84327 1.90706 1.41792 1.82095 1.26229 1.19325 1.21545 0.92662 0.92854 1.20586 0.98236 0.96670 0.92362 1.20267 1.15973 0.92957 0.97438 1.20814 0.99455 0.95739 0.95264 1.21432 1.04842 0.99389 0.91730 1.17378 0.86198 0.89104 0.93138 1.19602 1.33917 0.99286 0.92639 0.90247 1.25987 0.92566 0.94735 1.01040 1.69681 1.25141 1.07471 1.38738 0.86280 0.80145 0.78444 0.81569 1.18492 1.20095 1.18653 1.22469 0.89285 1.04546 0.88731 1.23007 0.97053 0.86194 0.96847 1.87242 1.63268 1.33627 1.43690 0.92316 0.92094 0.91290 0.91489 0.90128 0.89198 0.89181 0.87961 0.91362 0.89065 0.89098 0.89088 0.85713 0.90450 0.86947 0.91476 0.87744 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.98 37.24 0.33 -1.74 16 2 C 0.06 0.93 3.25 -26.41 -0.09 0.85 16 3 H 0.09 1.76 7.97 -52.05 -0.41 1.35 16 4 O -0.37 -5.86 11.00 -35.23 -0.39 -6.24 16 5 C 0.05 0.58 7.33 38.18 0.28 0.86 16 6 C -0.14 -1.52 6.13 -24.63 -0.15 -1.67 16 7 C 0.09 1.19 0.74 -89.47 -0.07 1.12 16 8 C 0.09 1.48 5.04 -3.82 -0.02 1.46 16 9 N -0.63 -11.27 3.00 -173.92 -0.52 -11.79 16 10 C 0.59 13.42 6.55 -12.58 -0.08 13.34 16 11 O -0.53 -14.11 15.26 5.26 0.08 -14.03 16 12 C -0.26 -6.15 4.91 -104.37 -0.51 -6.66 16 13 C -0.06 -1.25 7.56 -39.22 -0.30 -1.55 16 14 C -0.25 -5.09 10.03 -39.37 -0.39 -5.49 16 15 C -0.09 -2.06 10.01 -39.59 -0.40 -2.46 16 16 C -0.15 -3.83 8.66 -38.88 -0.34 -4.17 16 17 C 0.15 3.79 5.58 -106.54 -0.59 3.20 16 18 C -0.43 -11.43 7.90 -37.82 -0.30 -11.73 16 19 H 0.08 2.18 6.97 -52.48 -0.37 1.81 16 20 C 0.08 1.93 5.26 -17.30 -0.09 1.83 16 21 N -0.79 -20.07 10.80 55.56 0.60 -19.47 16 22 Si 0.91 19.36 29.58 -169.99 -5.03 14.33 16 23 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 C 0.07 1.07 5.48 -3.55 -0.02 1.05 16 27 C 0.05 0.59 6.36 37.26 0.24 0.82 16 28 O -0.36 -4.79 9.04 -35.05 -0.32 -5.11 16 29 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.88 5.86 -51.93 -0.30 0.58 16 32 H 0.07 0.76 8.10 -51.69 -0.42 0.34 16 33 H 0.08 0.76 8.18 -51.69 -0.42 0.34 16 34 H 0.09 0.91 8.09 -52.08 -0.42 0.49 16 35 H 0.09 0.82 7.81 -52.00 -0.41 0.42 16 36 H 0.10 1.82 6.64 -51.91 -0.34 1.48 16 37 H 0.07 0.94 7.91 -51.89 -0.41 0.53 16 38 H 0.09 1.67 7.34 -52.48 -0.39 1.29 16 39 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 3.17 6.18 -52.49 -0.32 2.85 16 42 H 0.28 6.60 8.29 -40.82 -0.34 6.27 16 43 H 0.11 1.79 5.22 -51.96 -0.27 1.52 16 44 H 0.07 0.87 8.14 -51.96 -0.42 0.44 16 45 H 0.10 1.03 8.18 -51.70 -0.42 0.61 16 46 H 0.06 0.81 6.76 -51.91 -0.35 0.46 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -30.17 359.71 -9.15 -39.32 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.51 Total: 8.49 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.49 Total: -10.93 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.08 Total: -31.25 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.62 Total: -25.38 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.17 -9.15 -39.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601539684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.380 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds