Wall clock time and date at job start Tue Mar 31 2020 17:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53155 * 1 3 3 H 1.08792 * 110.01021 * 2 1 4 4 O 1.43706 * 109.17681 * 121.14427 * 2 1 3 5 5 C 1.43684 * 110.33710 * 108.95999 * 4 2 1 6 6 C 1.54938 * 106.13430 * 346.07368 * 5 4 2 7 7 C 1.53466 * 110.32827 * 238.01558 * 2 1 3 8 8 C 1.52662 * 110.91654 * 155.69739 * 7 2 1 9 9 N 1.47232 * 108.82696 * 280.55410 * 8 7 2 10 10 C 1.34643 * 121.42832 * 129.03061 * 9 8 7 11 11 O 1.21614 * 119.99744 * 354.62144 * 10 9 8 12 12 C 1.47429 * 120.00200 * 174.61881 * 10 9 8 13 13 C 1.39229 * 120.28311 * 311.36796 * 12 10 9 14 14 C 1.38217 * 120.09168 * 179.74307 * 13 12 10 15 15 C 1.38831 * 120.67763 * 0.56338 * 14 13 12 16 16 C 1.37604 * 120.56671 * 359.69371 * 15 14 13 17 17 C 1.40705 * 119.88044 * 0.02562 * 16 15 14 18 18 C 1.40894 * 120.32061 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99429 * 151.78721 * 18 17 16 20 20 C 1.40265 * 120.00321 * 331.78730 * 18 17 16 21 21 N 1.30630 * 120.00450 * 349.17089 * 20 18 17 22 22 Si 1.86803 * 119.99977 * 169.16482 * 20 18 17 23 23 H 1.48505 * 109.46837 * 60.00383 * 22 20 18 24 24 H 1.48493 * 109.47109 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47244 * 300.00473 * 22 20 18 26 26 C 1.47201 * 117.28632 * 308.79422 * 9 8 7 27 27 C 1.53203 * 108.17817 * 53.74070 * 26 9 8 28 28 O 1.41293 * 112.53100 * 29.24492 * 7 2 1 29 29 H 1.08992 * 109.47723 * 181.98504 * 1 2 3 30 30 H 1.09002 * 109.47432 * 301.98749 * 1 2 3 31 31 H 1.08998 * 109.47184 * 61.98406 * 1 2 3 32 32 H 1.09425 * 110.51804 * 105.55377 * 5 4 2 33 33 H 1.09427 * 110.53179 * 226.61688 * 5 4 2 34 34 H 1.08726 * 111.45181 * 273.81738 * 6 5 4 35 35 H 1.08881 * 111.20286 * 148.96971 * 6 5 4 36 36 H 1.09031 * 109.69541 * 40.50044 * 8 7 2 37 37 H 1.09076 * 109.58023 * 160.75819 * 8 7 2 38 38 H 1.08003 * 119.95433 * 0.02562 * 13 12 10 39 39 H 1.08003 * 119.65964 * 180.27572 * 14 13 12 40 40 H 1.08001 * 119.71769 * 179.72020 * 15 14 13 41 41 H 1.07997 * 120.05423 * 180.02562 * 16 15 14 42 42 H 0.96994 * 120.00404 * 180.02562 * 21 20 18 43 43 H 1.08951 * 109.67794 * 173.41762 * 26 9 8 44 44 H 1.08947 * 109.68064 * 294.06266 * 26 9 8 45 45 H 1.09408 * 109.00740 * 188.32310 * 27 26 9 46 46 H 1.09029 * 109.24901 * 69.78298 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5316 0.0000 0.0000 3 1 1.9038 1.0222 0.0000 4 8 2.0036 -0.7020 1.1617 5 6 2.5811 -1.9621 0.7833 6 6 2.1433 -2.2138 -0.6815 7 6 2.0647 -0.7623 -1.2206 8 6 3.4727 -0.2960 -1.5820 9 7 3.3773 0.9699 -2.3277 10 6 4.0989 2.0498 -1.9729 11 8 4.7746 2.0243 -0.9621 12 6 4.0699 3.2632 -2.8098 13 6 4.2558 3.1711 -4.1866 14 6 4.2226 4.3107 -4.9681 15 6 4.0163 5.5577 -4.3938 16 6 3.8348 5.6811 -3.0354 17 6 3.8583 4.5360 -2.2181 18 6 3.6729 4.6516 -0.8262 19 1 3.2449 3.8315 -0.2686 20 6 4.0441 5.8314 -0.1648 21 7 4.7500 6.7360 -0.7892 22 14 3.5288 6.1095 1.6091 23 1 4.0870 5.0294 2.4618 24 1 4.0425 7.4230 2.0737 25 1 2.0467 6.0972 1.7018 26 6 2.4641 1.0061 -3.4817 27 6 1.0813 0.5438 -3.0116 28 8 1.1850 -0.6999 -2.3245 29 1 -0.3634 -1.0269 0.0356 30 1 -0.3634 0.5444 0.8716 31 1 -0.3633 0.4827 -0.9072 32 1 3.6725 -1.9191 0.8494 33 1 2.2118 -2.7633 1.4306 34 1 1.1707 -2.6977 -0.7282 35 1 2.8954 -2.7835 -1.2249 36 1 4.0538 -0.1425 -0.6723 37 1 3.9594 -1.0497 -2.2024 38 1 4.4216 2.2074 -4.6451 39 1 4.3631 4.2307 -6.0359 40 1 3.9978 6.4384 -5.0186 41 1 3.6745 6.6552 -2.5974 42 1 5.0070 7.5517 -0.3317 43 1 2.4008 2.0230 -3.8676 44 1 2.8304 0.3382 -4.2606 45 1 0.4308 0.4227 -3.8829 46 1 0.6508 1.3038 -2.3590 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601539684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:02 Heat of formation + Delta-G solvation = -111.751225 kcal Electronic energy + Delta-G solvation = -30308.534752 eV Core-core repulsion = 26355.398421 eV Total energy + Delta-G solvation = -3953.136330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.15292 -40.57060 -38.90132 -38.44247 -36.00436 -35.49245 -33.72444 -32.28584 -31.95783 -31.43621 -30.28806 -28.51601 -27.24625 -25.90343 -24.59337 -23.30658 -23.01634 -22.81572 -21.22125 -20.25644 -19.17434 -18.27596 -17.99551 -17.71317 -17.31936 -16.76549 -16.57033 -16.20125 -16.11545 -15.99758 -15.67904 -15.31073 -14.89012 -14.71863 -14.50564 -14.32218 -14.09927 -13.97152 -13.72087 -13.54454 -13.28810 -13.25551 -13.04920 -12.87915 -12.79338 -12.58825 -12.31622 -12.25092 -12.23532 -12.11947 -11.85246 -11.65581 -11.47524 -11.17533 -10.95447 -10.61348 -10.56425 -9.60696 -9.34736 -9.33642 -8.72503 -6.45053 0.60812 0.98484 1.26849 1.37466 1.44708 1.85598 2.10779 2.13104 2.36163 2.67636 2.93173 3.20089 3.45010 3.61354 3.62941 3.85356 4.03000 4.08719 4.11449 4.18881 4.23564 4.32773 4.37017 4.42330 4.48038 4.54660 4.60793 4.62952 4.74675 4.76292 4.83070 4.86672 4.88071 5.00060 5.02525 5.04046 5.18445 5.21658 5.31798 5.49215 5.57628 5.83714 5.93455 5.96738 6.09035 6.18395 6.23843 6.42167 6.61134 6.82380 6.90737 7.38896 8.21827 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011855 B = 0.005163 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.398737 B = 5421.614762 C = 6905.790570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 H 0.041 0.959 4 O -0.400 6.400 5 C 0.039 3.961 6 C -0.125 4.125 7 C 0.090 3.910 8 C 0.091 3.909 9 N -0.619 5.619 10 C 0.580 3.420 11 O -0.586 6.586 12 C -0.271 4.271 13 C -0.055 4.055 14 C -0.231 4.231 15 C -0.091 4.091 16 C -0.181 4.181 17 C 0.115 3.885 18 C -0.465 4.465 19 H 0.052 0.948 20 C 0.039 3.961 21 N -0.814 5.814 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.253 1.253 25 H -0.255 1.255 26 C 0.068 3.932 27 C 0.047 3.953 28 O -0.350 6.350 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.292 0.708 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.146 0.854 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -14.489 -5.209 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.001 4.001 3 H 0.059 0.941 4 O -0.320 6.320 5 C -0.037 4.037 6 C -0.163 4.163 7 C 0.048 3.952 8 C -0.032 4.032 9 N -0.353 5.353 10 C 0.373 3.627 11 O -0.466 6.466 12 C -0.276 4.276 13 C -0.074 4.074 14 C -0.250 4.250 15 C -0.110 4.110 16 C -0.200 4.200 17 C 0.112 3.888 18 C -0.494 4.494 19 H 0.070 0.930 20 C -0.177 4.177 21 N -0.440 5.440 22 Si 0.790 3.210 23 H -0.203 1.203 24 H -0.176 1.176 25 H -0.179 1.179 26 C -0.054 4.054 27 C -0.030 4.030 28 O -0.268 6.268 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.164 0.836 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.030 -14.334 -4.490 17.033 hybrid contribution 0.491 0.935 1.056 1.493 sum -7.539 -13.400 -3.435 15.754 Atomic orbital electron populations 1.22016 0.92823 1.03449 1.02178 1.23007 0.96252 0.95033 0.85815 0.94065 1.88498 1.79537 1.33214 1.30754 1.23686 0.98486 0.85819 0.95663 1.23198 1.05423 0.92961 0.94678 1.22529 0.88790 0.97428 0.86437 1.22199 0.96974 0.85930 0.98049 1.48135 1.44043 1.11155 1.31996 1.18592 0.77616 0.82813 0.83655 1.90665 1.44506 1.83221 1.28206 1.19634 1.21013 0.92419 0.94489 1.20911 0.96859 0.98564 0.91027 1.20760 1.12939 0.91899 0.99446 1.21175 0.97769 0.97745 0.94282 1.21379 1.07057 0.98418 0.93163 1.17711 0.87063 0.90729 0.93292 1.19551 1.36705 0.99646 0.93543 0.92975 1.26617 0.92342 0.94250 1.04470 1.69702 1.26073 1.08047 1.40166 0.85458 0.80092 0.78571 0.76887 1.20304 1.17611 1.17863 1.22744 0.89741 1.04768 0.88137 1.23127 0.96306 0.85729 0.97834 1.87273 1.62815 1.33519 1.43144 0.90380 0.92793 0.90865 0.91733 0.87323 0.87426 0.86665 0.90985 0.88397 0.85758 0.84924 0.86186 0.87354 0.89741 0.88235 0.88245 0.83624 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.98 72.03 0.65 -3.25 16 2 C 0.06 1.83 3.25 30.80 0.10 1.93 16 3 H 0.04 1.72 7.97 -2.50 -0.02 1.70 16 4 O -0.40 -12.93 11.00 -148.98 -1.64 -14.57 16 5 C 0.04 0.87 7.33 72.64 0.53 1.40 16 6 C -0.13 -2.33 6.13 31.96 0.20 -2.13 16 7 C 0.09 2.35 0.74 -10.05 -0.01 2.35 16 8 C 0.09 2.83 5.04 86.13 0.43 3.27 16 9 N -0.62 -22.32 3.00 -822.47 -2.47 -24.78 16 10 C 0.58 27.75 6.55 86.69 0.57 28.32 16 11 O -0.59 -33.37 15.26 -4.08 -0.06 -33.43 16 12 C -0.27 -13.17 4.91 -19.70 -0.10 -13.27 16 13 C -0.06 -2.20 7.56 22.50 0.17 -2.03 16 14 C -0.23 -8.80 10.03 22.41 0.22 -8.57 16 15 C -0.09 -3.87 10.01 22.26 0.22 -3.65 16 16 C -0.18 -9.21 8.66 22.72 0.20 -9.02 16 17 C 0.12 6.32 5.58 -21.11 -0.12 6.20 16 18 C -0.47 -26.97 7.90 23.41 0.19 -26.78 16 19 H 0.05 3.18 6.97 -2.91 -0.02 3.16 16 20 C 0.04 2.10 5.26 85.36 0.45 2.55 16 21 N -0.81 -43.70 10.80 21.88 0.24 -43.46 16 22 Si 0.97 42.13 29.58 68.60 2.03 44.16 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 26 C 0.07 1.85 5.48 86.31 0.47 2.32 16 27 C 0.05 1.08 6.36 72.05 0.46 1.54 16 28 O -0.35 -8.24 9.04 -148.32 -1.34 -9.58 16 29 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.84 5.86 -2.39 -0.01 1.82 16 32 H 0.06 1.44 8.10 -2.16 -0.02 1.42 16 33 H 0.11 1.79 8.18 -2.16 -0.02 1.77 16 34 H 0.11 1.70 8.09 -2.53 -0.02 1.68 16 35 H 0.12 1.61 7.81 -2.45 -0.02 1.59 16 36 H 0.07 2.70 6.64 -2.37 -0.02 2.69 16 37 H 0.10 2.46 7.91 -2.35 -0.02 2.44 16 38 H 0.12 4.10 7.34 -2.91 -0.02 4.07 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 42 H 0.29 14.10 8.29 -92.71 -0.77 13.33 16 43 H 0.10 3.00 5.22 -2.41 -0.01 2.98 16 44 H 0.10 2.12 8.14 -2.41 -0.02 2.10 16 45 H 0.15 2.22 8.18 -2.17 -0.02 2.21 16 46 H 0.04 1.10 6.76 -2.37 -0.02 1.09 16 Total: -1.00 -72.65 359.71 2.39 -70.26 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 1.00 Total: 30.23 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.64 Total: -18.82 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -2.23 Total: -68.24 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -3.04 Total: -57.59 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -72.65 2.39 -70.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601539684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.490 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds