Wall clock time and date at job start Tue Mar 31 2020 17:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 110.04922 * 2 1 4 4 O 1.43892 * 109.90984 * 238.82175 * 2 1 3 5 5 C 1.44430 * 106.99371 * 214.26006 * 4 2 1 6 6 C 1.55103 * 103.56164 * 39.73082 * 5 4 2 7 7 C 1.53559 * 109.90991 * 121.18175 * 2 1 3 8 8 C 1.52675 * 110.38143 * 3.19949 * 7 2 1 9 9 N 1.47273 * 108.38313 * 186.30991 * 8 7 2 10 10 C 1.34776 * 121.04309 * 229.57006 * 9 8 7 11 11 O 1.21614 * 119.99765 * 355.97821 * 10 9 8 12 12 C 1.47427 * 120.00306 * 175.97981 * 10 9 8 13 13 C 1.39224 * 120.28121 * 52.10976 * 12 10 9 14 14 C 1.38229 * 120.09036 * 179.72325 * 13 12 10 15 15 C 1.38829 * 120.67520 * 0.56118 * 14 13 12 16 16 C 1.37603 * 120.56938 * 359.71714 * 15 14 13 17 17 C 1.40704 * 119.87998 * 0.02562 * 16 15 14 18 18 C 1.40894 * 120.32229 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99621 * 213.57410 * 18 17 16 20 20 C 1.40267 * 120.00258 * 33.57359 * 18 17 16 21 21 N 1.30635 * 120.00193 * 358.70920 * 20 18 17 22 22 Si 1.86803 * 120.00087 * 178.70982 * 20 18 17 23 23 H 1.48503 * 109.46968 * 59.99663 * 22 20 18 24 24 H 1.48499 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46943 * 300.00073 * 22 20 18 26 26 C 1.47161 * 117.91450 * 49.59577 * 9 8 7 27 27 C 1.53286 * 108.51128 * 308.97008 * 26 9 8 28 28 O 1.42232 * 110.65772 * 240.19585 * 7 2 1 29 29 H 1.08997 * 109.47389 * 298.81330 * 1 2 3 30 30 H 1.08999 * 109.47054 * 58.82161 * 1 2 3 31 31 H 1.09000 * 109.46813 * 178.81525 * 1 2 3 32 32 H 1.08997 * 110.60964 * 281.21103 * 5 4 2 33 33 H 1.09006 * 110.60646 * 158.25184 * 5 4 2 34 34 H 1.08994 * 110.93699 * 205.23265 * 6 5 4 35 35 H 1.09006 * 110.96008 * 81.58226 * 6 5 4 36 36 H 1.09002 * 109.67837 * 306.03522 * 8 7 2 37 37 H 1.09002 * 109.68063 * 66.54897 * 8 7 2 38 38 H 1.07994 * 119.95762 * 0.02562 * 13 12 10 39 39 H 1.07998 * 119.66015 * 180.25718 * 14 13 12 40 40 H 1.08000 * 119.71345 * 179.74338 * 15 14 13 41 41 H 1.07997 * 120.05538 * 180.02562 * 16 15 14 42 42 H 0.96998 * 120.00052 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.62779 * 189.26533 * 26 9 8 44 44 H 1.09001 * 109.62711 * 68.67449 * 26 9 8 45 45 H 1.09000 * 109.50941 * 292.87222 * 27 26 9 46 46 H 1.08998 * 109.51087 * 172.72790 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 8 2.0201 -0.7004 -1.1575 5 6 3.2372 -1.3699 -0.7619 6 6 2.9193 -1.8897 0.6644 7 6 2.0530 -0.7475 1.2352 8 6 0.8906 -1.3267 2.0379 9 7 1.4265 -1.8988 3.2847 10 6 1.0962 -3.1457 3.6754 11 8 0.2883 -3.7899 3.0342 12 6 1.7144 -3.7286 4.8802 13 6 1.6937 -3.0335 6.0863 14 6 2.2694 -3.5863 7.2148 15 6 2.8833 -4.8303 7.1597 16 6 2.9247 -5.5387 5.9808 17 6 2.3413 -5.0007 4.8189 18 6 2.3778 -5.7183 3.6069 19 1 2.4548 -5.1894 2.6684 20 6 2.3142 -7.1194 3.6192 21 7 2.2465 -7.7603 4.7556 22 14 2.3262 -8.0691 2.0107 23 1 3.5792 -7.7733 1.2706 24 1 2.2502 -9.5247 2.2946 25 1 1.1581 -7.6641 1.1880 26 6 2.3334 -1.0661 4.0907 27 6 3.4401 -0.5271 3.1773 28 8 2.8458 0.1128 2.0440 29 1 -0.3634 0.4953 0.9004 30 1 -0.3633 0.5320 -0.8792 31 1 -0.3633 -1.0275 -0.0212 32 1 4.0707 -0.6679 -0.7374 33 1 3.4538 -2.2007 -1.4336 34 1 3.8325 -2.0138 1.2463 35 1 2.3564 -2.8222 0.6232 36 1 0.1774 -0.5366 2.2732 37 1 0.3966 -2.1064 1.4581 38 1 1.2229 -2.0631 6.1414 39 1 2.2457 -3.0428 8.1478 40 1 3.3319 -5.2457 8.0500 41 1 3.4040 -6.5059 5.9475 42 1 2.2021 -8.7292 4.7640 43 1 2.7749 -1.6684 4.8847 44 1 1.7784 -0.2339 4.5239 45 1 4.0688 -1.3518 2.8415 46 1 4.0462 0.1936 3.7261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601539686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:06 Heat of formation + Delta-G solvation = -87.194805 kcal Electronic energy + Delta-G solvation = -30230.262864 eV Core-core repulsion = 26278.191380 eV Total energy + Delta-G solvation = -3952.071484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96194 -39.02658 -37.57094 -36.77846 -34.37263 -33.71021 -33.03093 -31.35716 -30.15445 -29.63505 -29.01571 -26.57429 -25.45211 -25.04219 -23.54413 -22.09199 -21.62953 -21.02623 -19.57980 -18.74355 -17.38894 -17.17445 -16.68989 -15.97363 -15.78532 -15.65957 -15.24286 -15.18954 -14.74043 -14.38742 -14.19674 -13.97191 -13.77272 -13.40348 -13.00726 -12.75630 -12.74853 -12.46834 -12.27096 -12.21939 -11.93058 -11.72928 -11.44693 -11.35915 -11.21077 -11.20081 -11.13962 -10.89025 -10.84686 -10.51664 -10.43315 -10.02675 -9.95008 -9.76494 -9.74339 -9.32557 -8.79071 -8.10789 -7.60893 -7.46617 -6.79211 -4.53149 2.40306 2.75074 3.03772 3.06341 3.18784 3.35430 3.53723 3.75555 3.80012 3.90379 4.43826 4.56796 4.64980 4.78547 5.00161 5.05608 5.14731 5.19849 5.22048 5.37603 5.43631 5.46278 5.48464 5.60729 5.68642 5.70198 5.78035 5.84959 5.91662 5.95604 6.02636 6.04950 6.10936 6.14826 6.25424 6.47755 6.70356 6.90314 6.91906 7.01687 7.17156 7.19961 7.37233 7.57122 7.79711 7.88408 7.99456 8.13369 8.47159 8.72652 8.77063 9.08064 10.11100 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.005015 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.333628 B = 5582.125825 C = 7048.340586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 H 0.082 0.918 4 O -0.371 6.371 5 C 0.051 3.949 6 C -0.179 4.179 7 C 0.078 3.922 8 C 0.098 3.902 9 N -0.624 5.624 10 C 0.587 3.413 11 O -0.534 6.534 12 C -0.248 4.248 13 C -0.069 4.069 14 C -0.239 4.239 15 C -0.098 4.098 16 C -0.149 4.149 17 C 0.144 3.856 18 C -0.432 4.432 19 H 0.074 0.926 20 C 0.075 3.925 21 N -0.797 5.797 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.262 1.262 26 C 0.071 3.929 27 C 0.044 3.956 28 O -0.368 6.368 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.283 0.717 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 12.084 -4.665 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 H 0.099 0.901 4 O -0.291 6.291 5 C -0.025 4.025 6 C -0.217 4.217 7 C 0.037 3.963 8 C -0.025 4.025 9 N -0.361 5.361 10 C 0.380 3.620 11 O -0.410 6.410 12 C -0.253 4.253 13 C -0.088 4.088 14 C -0.258 4.258 15 C -0.116 4.116 16 C -0.169 4.169 17 C 0.140 3.860 18 C -0.461 4.461 19 H 0.093 0.907 20 C -0.143 4.143 21 N -0.423 5.423 22 Si 0.739 3.261 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.053 4.053 27 C -0.033 4.033 28 O -0.287 6.287 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.340 11.635 -5.170 12.946 hybrid contribution 0.080 -0.697 -0.150 0.718 sum 2.420 10.938 -5.320 12.402 Atomic orbital electron populations 1.22054 0.92951 1.03625 1.02679 1.22463 0.95155 0.96025 0.82914 0.90059 1.88928 1.40157 1.67584 1.32382 1.23528 0.87513 0.96274 0.95202 1.23689 1.01659 0.99435 0.96872 1.22701 0.91663 0.90423 0.91517 1.22191 0.94761 0.98951 0.86608 1.48278 1.49098 1.15481 1.23238 1.18571 0.80236 0.78547 0.84668 1.90692 1.33928 1.59884 1.56524 1.19470 1.12754 1.00654 0.92407 1.20608 0.98244 0.97146 0.92766 1.20321 1.10106 0.98374 0.96986 1.20867 0.98989 0.94674 0.97117 1.21595 1.02201 1.00834 0.92227 1.17404 0.86653 0.88349 0.93585 1.19460 1.42036 0.90951 0.93701 0.90745 1.25929 0.92040 0.98164 0.98139 1.69637 1.35554 1.10156 1.26947 0.86232 0.80134 0.77972 0.81730 1.18862 1.20152 1.18588 1.22529 0.91925 0.95493 0.95316 1.23128 0.95052 0.98348 0.86817 1.87794 1.66209 1.36014 1.38710 0.90614 0.91494 0.91082 0.91971 0.88767 0.89238 0.89091 0.91095 0.87987 0.88916 0.88991 0.89000 0.85105 0.90613 0.86856 0.91528 0.92022 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.09 1.18 3.88 -26.44 -0.10 1.08 16 3 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 4 O -0.37 -5.19 11.20 -35.23 -0.39 -5.58 16 5 C 0.05 0.64 7.73 38.27 0.30 0.94 16 6 C -0.18 -2.58 6.04 -24.94 -0.15 -2.73 16 7 C 0.08 1.09 0.99 -89.82 -0.09 1.00 16 8 C 0.10 1.54 4.00 -3.79 -0.02 1.52 16 9 N -0.62 -11.15 2.89 -173.82 -0.50 -11.66 16 10 C 0.59 13.27 6.47 -12.52 -0.08 13.19 16 11 O -0.53 -13.93 15.65 5.26 0.08 -13.84 16 12 C -0.25 -5.83 5.00 -104.37 -0.52 -6.35 16 13 C -0.07 -1.42 7.41 -39.22 -0.29 -1.71 16 14 C -0.24 -4.86 10.03 -39.37 -0.39 -5.25 16 15 C -0.10 -2.12 10.01 -39.59 -0.40 -2.52 16 16 C -0.15 -3.66 8.66 -38.88 -0.34 -4.00 16 17 C 0.14 3.70 5.57 -106.54 -0.59 3.10 16 18 C -0.43 -11.42 7.83 -37.81 -0.30 -11.71 16 19 H 0.07 1.98 7.32 -52.49 -0.38 1.60 16 20 C 0.07 1.89 5.40 -17.30 -0.09 1.79 16 21 N -0.80 -20.27 10.63 55.56 0.59 -19.68 16 22 Si 0.92 19.33 29.56 -169.99 -5.03 14.30 16 23 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 26 C 0.07 1.04 5.57 -3.53 -0.02 1.02 16 27 C 0.04 0.56 6.73 37.31 0.25 0.81 16 28 O -0.37 -5.06 10.17 -35.23 -0.36 -5.42 16 29 H 0.08 0.75 6.70 -51.93 -0.35 0.41 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.86 6.88 -51.93 -0.36 0.50 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.28 5.96 -51.93 -0.31 0.97 16 35 H 0.09 1.51 7.70 -51.93 -0.40 1.11 16 36 H 0.07 1.00 6.32 -51.93 -0.33 0.67 16 37 H 0.10 1.79 6.01 -51.93 -0.31 1.47 16 38 H 0.09 1.68 7.21 -52.49 -0.38 1.30 16 39 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 3.32 6.16 -52.49 -0.32 3.00 16 42 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 43 H 0.11 1.79 4.84 -51.93 -0.25 1.54 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.84 6.12 -51.93 -0.32 0.52 16 46 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -29.60 355.42 -8.99 -38.60 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.22 Total: 9.16 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.52 Total: -11.24 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.09 Total: -31.33 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.67 Total: -24.84 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.60 -8.99 -38.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601539686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.599 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds