Wall clock time and date at job start Tue Mar 31 2020 17:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 110.04922 * 2 1 4 4 O 1.43892 * 109.90984 * 238.82175 * 2 1 3 5 5 C 1.44430 * 106.99371 * 214.26006 * 4 2 1 6 6 C 1.55103 * 103.56164 * 39.73082 * 5 4 2 7 7 C 1.53559 * 109.90991 * 121.18175 * 2 1 3 8 8 C 1.52675 * 110.38143 * 3.19949 * 7 2 1 9 9 N 1.47273 * 108.38313 * 186.30991 * 8 7 2 10 10 C 1.34776 * 121.04309 * 229.57006 * 9 8 7 11 11 O 1.21614 * 119.99765 * 355.97821 * 10 9 8 12 12 C 1.47427 * 120.00306 * 175.97981 * 10 9 8 13 13 C 1.39224 * 120.28121 * 52.10976 * 12 10 9 14 14 C 1.38229 * 120.09036 * 179.72325 * 13 12 10 15 15 C 1.38829 * 120.67520 * 0.56118 * 14 13 12 16 16 C 1.37603 * 120.56938 * 359.71714 * 15 14 13 17 17 C 1.40704 * 119.87998 * 0.02562 * 16 15 14 18 18 C 1.40894 * 120.32229 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99621 * 213.57410 * 18 17 16 20 20 C 1.40267 * 120.00258 * 33.57359 * 18 17 16 21 21 N 1.30635 * 120.00193 * 358.70920 * 20 18 17 22 22 Si 1.86803 * 120.00087 * 178.70982 * 20 18 17 23 23 H 1.48503 * 109.46968 * 59.99663 * 22 20 18 24 24 H 1.48499 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46943 * 300.00073 * 22 20 18 26 26 C 1.47161 * 117.91450 * 49.59577 * 9 8 7 27 27 C 1.53286 * 108.51128 * 308.97008 * 26 9 8 28 28 O 1.42232 * 110.65772 * 240.19585 * 7 2 1 29 29 H 1.08997 * 109.47389 * 298.81330 * 1 2 3 30 30 H 1.08999 * 109.47054 * 58.82161 * 1 2 3 31 31 H 1.09000 * 109.46813 * 178.81525 * 1 2 3 32 32 H 1.08997 * 110.60964 * 281.21103 * 5 4 2 33 33 H 1.09006 * 110.60646 * 158.25184 * 5 4 2 34 34 H 1.08994 * 110.93699 * 205.23265 * 6 5 4 35 35 H 1.09006 * 110.96008 * 81.58226 * 6 5 4 36 36 H 1.09002 * 109.67837 * 306.03522 * 8 7 2 37 37 H 1.09002 * 109.68063 * 66.54897 * 8 7 2 38 38 H 1.07994 * 119.95762 * 0.02562 * 13 12 10 39 39 H 1.07998 * 119.66015 * 180.25718 * 14 13 12 40 40 H 1.08000 * 119.71345 * 179.74338 * 15 14 13 41 41 H 1.07997 * 120.05538 * 180.02562 * 16 15 14 42 42 H 0.96998 * 120.00052 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.62779 * 189.26533 * 26 9 8 44 44 H 1.09001 * 109.62711 * 68.67449 * 26 9 8 45 45 H 1.09000 * 109.50941 * 292.87222 * 27 26 9 46 46 H 1.08998 * 109.51087 * 172.72790 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 8 2.0201 -0.7004 -1.1575 5 6 3.2372 -1.3699 -0.7619 6 6 2.9193 -1.8897 0.6644 7 6 2.0530 -0.7475 1.2352 8 6 0.8906 -1.3267 2.0379 9 7 1.4265 -1.8988 3.2847 10 6 1.0962 -3.1457 3.6754 11 8 0.2883 -3.7899 3.0342 12 6 1.7144 -3.7286 4.8802 13 6 1.6937 -3.0335 6.0863 14 6 2.2694 -3.5863 7.2148 15 6 2.8833 -4.8303 7.1597 16 6 2.9247 -5.5387 5.9808 17 6 2.3413 -5.0007 4.8189 18 6 2.3778 -5.7183 3.6069 19 1 2.4548 -5.1894 2.6684 20 6 2.3142 -7.1194 3.6192 21 7 2.2465 -7.7603 4.7556 22 14 2.3262 -8.0691 2.0107 23 1 3.5792 -7.7733 1.2706 24 1 2.2502 -9.5247 2.2946 25 1 1.1581 -7.6641 1.1880 26 6 2.3334 -1.0661 4.0907 27 6 3.4401 -0.5271 3.1773 28 8 2.8458 0.1128 2.0440 29 1 -0.3634 0.4953 0.9004 30 1 -0.3633 0.5320 -0.8792 31 1 -0.3633 -1.0275 -0.0212 32 1 4.0707 -0.6679 -0.7374 33 1 3.4538 -2.2007 -1.4336 34 1 3.8325 -2.0138 1.2463 35 1 2.3564 -2.8222 0.6232 36 1 0.1774 -0.5366 2.2732 37 1 0.3966 -2.1064 1.4581 38 1 1.2229 -2.0631 6.1414 39 1 2.2457 -3.0428 8.1478 40 1 3.3319 -5.2457 8.0500 41 1 3.4040 -6.5059 5.9475 42 1 2.2021 -8.7292 4.7640 43 1 2.7749 -1.6684 4.8847 44 1 1.7784 -0.2339 4.5239 45 1 4.0688 -1.3518 2.8415 46 1 4.0462 0.1936 3.7261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601539686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:05 Heat of formation + Delta-G solvation = -105.510058 kcal Electronic energy + Delta-G solvation = -30231.057073 eV Core-core repulsion = 26278.191380 eV Total energy + Delta-G solvation = -3952.865693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17543 -40.57471 -38.89443 -38.41359 -35.92183 -35.44757 -34.15409 -32.43429 -31.91578 -31.37670 -30.19763 -28.01906 -27.07276 -26.23486 -24.78698 -23.61858 -22.84546 -22.73050 -20.96068 -20.11661 -19.14851 -18.46702 -18.15887 -17.38069 -17.13609 -16.88197 -16.78642 -16.27979 -16.24730 -15.97347 -15.59000 -15.20611 -15.07774 -14.86761 -14.47490 -14.37610 -14.19215 -13.81885 -13.62708 -13.53984 -13.38027 -13.11300 -12.92621 -12.90908 -12.72843 -12.48997 -12.40045 -12.25747 -12.22537 -11.97525 -11.82786 -11.66584 -11.52233 -11.19209 -11.10042 -10.78794 -10.52834 -9.57362 -9.33080 -9.27079 -8.63841 -6.46062 0.62279 0.99526 1.27925 1.37875 1.45989 1.86010 2.11888 2.14687 2.44716 2.72187 2.74742 3.31180 3.46812 3.60038 3.73087 3.84684 3.93563 4.02887 4.09703 4.13165 4.24591 4.32612 4.35921 4.42709 4.49627 4.53958 4.59212 4.61466 4.70876 4.72899 4.79536 4.84523 4.88437 4.95311 4.99344 5.05736 5.21042 5.22107 5.34076 5.50795 5.59260 5.68018 5.82633 5.99534 6.09061 6.09413 6.24549 6.42956 6.62648 6.85036 6.91515 7.38010 8.28090 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.005015 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.333628 B = 5582.125825 C = 7048.340586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.094 3.906 3 H 0.097 0.903 4 O -0.386 6.386 5 C 0.056 3.944 6 C -0.182 4.182 7 C 0.084 3.916 8 C 0.097 3.903 9 N -0.617 5.617 10 C 0.582 3.418 11 O -0.585 6.585 12 C -0.260 4.260 13 C -0.064 4.064 14 C -0.224 4.224 15 C -0.096 4.096 16 C -0.175 4.175 17 C 0.113 3.887 18 C -0.467 4.467 19 H 0.053 0.947 20 C 0.036 3.964 21 N -0.825 5.825 22 Si 0.971 3.029 23 H -0.254 1.254 24 H -0.257 1.257 25 H -0.278 1.278 26 C 0.065 3.935 27 C 0.045 3.955 28 O -0.363 6.363 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.288 0.712 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 14.974 -3.752 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.115 0.885 4 O -0.305 6.305 5 C -0.021 4.021 6 C -0.220 4.220 7 C 0.042 3.958 8 C -0.025 4.025 9 N -0.351 5.351 10 C 0.375 3.625 11 O -0.465 6.465 12 C -0.265 4.265 13 C -0.083 4.083 14 C -0.243 4.243 15 C -0.114 4.114 16 C -0.194 4.194 17 C 0.110 3.890 18 C -0.497 4.497 19 H 0.071 0.929 20 C -0.178 4.178 21 N -0.452 5.452 22 Si 0.793 3.207 23 H -0.178 1.178 24 H -0.181 1.181 25 H -0.204 1.204 26 C -0.057 4.057 27 C -0.031 4.031 28 O -0.281 6.281 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.963 14.576 -4.238 15.466 hybrid contribution -0.104 -1.408 -0.293 1.442 sum 2.859 13.168 -4.531 14.216 Atomic orbital electron populations 1.22071 0.91958 1.02964 1.04190 1.22586 0.95991 0.96193 0.81663 0.88489 1.88915 1.40752 1.67855 1.33026 1.23597 0.87663 0.96939 0.93851 1.23636 1.01246 0.98416 0.98702 1.22637 0.90832 0.90434 0.91850 1.22331 0.95952 0.98604 0.85662 1.48225 1.48649 1.14332 1.23915 1.18577 0.79811 0.79771 0.84369 1.90654 1.36340 1.61640 1.57853 1.19749 1.12238 1.00363 0.94106 1.20940 0.97594 0.98141 0.91611 1.20805 1.07577 0.97558 0.98320 1.21212 0.98318 0.94992 0.96910 1.21529 1.03574 1.00982 0.93341 1.17718 0.87698 0.89675 0.93956 1.19460 1.44938 0.91980 0.93349 0.92880 1.26591 0.91632 0.98510 1.01084 1.69680 1.36795 1.10560 1.28160 0.85412 0.79646 0.77644 0.78014 1.17764 1.18076 1.20371 1.22800 0.92214 0.95446 0.95230 1.23252 0.94359 0.99065 0.86444 1.87813 1.65924 1.35625 1.38765 0.89148 0.89940 0.92828 0.90010 0.87892 0.89420 0.92494 0.88796 0.90606 0.85657 0.84867 0.86211 0.86882 0.90069 0.87817 0.88664 0.93301 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.37 71.99 0.60 -2.61 16 2 C 0.09 2.22 3.88 30.79 0.12 2.34 16 3 H 0.10 2.04 7.97 -2.39 -0.02 2.02 16 4 O -0.39 -10.36 11.20 -148.98 -1.67 -12.03 16 5 C 0.06 1.35 7.73 72.70 0.56 1.91 16 6 C -0.18 -5.36 6.04 31.75 0.19 -5.17 16 7 C 0.08 2.25 0.99 -10.28 -0.01 2.24 16 8 C 0.10 3.03 4.00 86.12 0.34 3.37 16 9 N -0.62 -21.88 2.89 -822.08 -2.38 -24.26 16 10 C 0.58 27.12 6.47 86.66 0.56 27.68 16 11 O -0.58 -32.28 15.65 -4.08 -0.06 -32.35 16 12 C -0.26 -12.37 5.00 -19.70 -0.10 -12.47 16 13 C -0.06 -2.52 7.41 22.50 0.17 -2.35 16 14 C -0.22 -8.36 10.03 22.41 0.22 -8.13 16 15 C -0.10 -4.01 10.01 22.26 0.22 -3.79 16 16 C -0.17 -8.78 8.66 22.72 0.20 -8.59 16 17 C 0.11 6.04 5.57 -21.11 -0.12 5.92 16 18 C -0.47 -26.32 7.83 23.41 0.18 -26.14 16 19 H 0.05 3.08 7.32 -2.91 -0.02 3.06 16 20 C 0.04 1.91 5.40 85.36 0.46 2.37 16 21 N -0.83 -43.84 10.63 21.88 0.23 -43.61 16 22 Si 0.97 41.60 29.56 68.60 2.03 43.63 16 23 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.07 1.76 5.57 86.35 0.48 2.24 16 27 C 0.05 1.04 6.73 72.08 0.49 1.53 16 28 O -0.36 -8.93 10.17 -148.98 -1.51 -10.45 16 29 H 0.09 1.59 6.70 -2.39 -0.02 1.57 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.30 6.88 -2.39 -0.02 1.29 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.09 2.56 5.96 -2.39 -0.01 2.55 16 35 H 0.06 2.05 7.70 -2.38 -0.02 2.03 16 36 H 0.09 2.49 6.32 -2.39 -0.02 2.48 16 37 H 0.08 2.81 6.01 -2.39 -0.01 2.79 16 38 H 0.13 4.05 7.21 -2.91 -0.02 4.03 16 39 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 40 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 42 H 0.29 13.93 8.29 -92.71 -0.77 13.16 16 43 H 0.10 3.04 4.84 -2.39 -0.01 3.03 16 44 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.27 6.12 -2.39 -0.01 1.26 16 46 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.61 355.42 2.22 -66.38 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 1.01 Total: 32.33 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.58 Total: -19.65 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -2.14 Total: -67.87 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -3.25 Total: -54.82 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -68.61 2.22 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601539686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.125 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds