Wall clock time and date at job start Tue Mar 31 2020 17:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50883 * 2 1 4 4 C 1.53283 * 109.51669 * 239.89791 * 2 1 3 5 5 N 1.47163 * 108.53403 * 187.02156 * 4 2 1 6 6 C 1.34776 * 121.07196 * 231.24412 * 5 4 2 7 7 O 1.21603 * 120.00396 * 174.64056 * 6 5 4 8 8 C 1.47437 * 119.99499 * 354.63826 * 6 5 4 9 9 C 1.39225 * 120.28214 * 311.81520 * 8 6 5 10 10 C 1.38220 * 120.08856 * 180.02562 * 9 8 6 11 11 C 1.38825 * 120.67745 * 0.02562 * 10 9 8 12 12 C 1.37591 * 120.57315 * 0.02562 * 11 10 9 13 13 C 1.40710 * 119.87861 * 359.67825 * 12 11 10 14 14 C 1.40890 * 120.33119 * 180.29823 * 13 12 11 15 15 H 1.07998 * 120.00618 * 151.76796 * 14 13 12 16 16 C 1.40274 * 120.00024 * 331.77436 * 14 13 12 17 17 N 1.30633 * 120.00013 * 349.25203 * 16 14 13 18 18 Si 1.86799 * 120.00385 * 169.24854 * 16 14 13 19 19 H 1.48506 * 109.46542 * 60.00010 * 18 16 14 20 20 H 1.48498 * 109.47044 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47195 * 300.00268 * 18 16 14 22 22 C 1.47309 * 117.86006 * 51.21519 * 5 4 2 23 23 C 1.52434 * 108.44527 * 310.75473 * 22 5 4 24 24 C 1.54602 * 110.13600 * 172.94329 * 23 22 5 25 25 C 1.55078 * 100.87976 * 151.49723 * 24 23 22 26 26 O 1.43716 * 105.20198 * 324.22743 * 25 24 23 27 27 C 1.43426 * 109.93238 * 24.30462 * 26 25 24 28 28 O 1.41971 * 111.29705 * 50.12022 * 23 22 5 29 29 H 1.09003 * 109.46838 * 180.10079 * 1 2 3 30 30 H 1.08993 * 109.47517 * 300.10053 * 1 2 3 31 31 H 1.08996 * 109.47483 * 60.10779 * 1 2 3 32 32 H 1.09005 * 109.62480 * 67.30677 * 4 2 1 33 33 H 1.08998 * 109.62358 * 306.73788 * 4 2 1 34 34 H 1.07996 * 119.95403 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.65944 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.71408 * 179.97438 * 11 10 9 37 37 H 1.07994 * 120.06282 * 179.97438 * 12 11 10 38 38 H 0.96992 * 120.00248 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.64284 * 191.06729 * 22 5 4 40 40 H 1.09000 * 109.64320 * 70.44328 * 22 5 4 41 41 H 1.09004 * 111.13517 * 269.39621 * 24 23 22 42 42 H 1.09001 * 111.13809 * 33.59358 * 24 23 22 43 43 H 1.08995 * 110.29553 * 83.15667 * 25 24 23 44 44 H 1.08993 * 110.29379 * 205.29502 * 25 24 23 45 45 H 1.08994 * 109.85999 * 238.35085 * 27 26 25 46 46 H 1.09004 * 109.95908 * 117.33064 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 -1.2499 5 7 3.5036 -0.8613 -1.1456 6 6 4.3122 -0.4723 -2.1512 7 8 5.5193 -0.5028 -2.0074 8 6 3.7331 -0.0097 -3.4257 9 6 2.7362 -0.7513 -4.0540 10 6 2.1965 -0.3143 -5.2491 11 6 2.6381 0.8632 -5.8371 12 6 3.6225 1.6170 -5.2406 13 6 4.1842 1.1975 -4.0206 14 6 5.1883 1.9653 -3.3983 15 1 5.3010 1.9387 -2.3246 16 6 6.0417 2.7645 -4.1734 17 7 6.0494 2.6414 -5.4739 18 14 7.1671 4.0048 -3.3460 19 1 8.0840 3.2978 -2.4161 20 1 7.9622 4.7173 -4.3781 21 1 6.3501 4.9846 -2.5861 22 6 4.0545 -1.4363 0.0937 23 6 3.4235 -0.7179 1.2809 24 6 3.8383 -1.4065 2.6015 25 6 3.7752 -0.2111 3.5873 26 8 4.2211 0.9260 2.8298 27 6 4.0052 0.6965 1.4306 28 8 2.0090 -0.6768 1.1663 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3634 0.5153 0.8890 31 1 -0.3634 0.5121 -0.8909 32 1 1.7910 -0.1445 -2.1380 33 1 1.5855 -1.7123 -1.3132 34 1 2.3848 -1.6697 -3.6075 35 1 1.4232 -0.8947 -5.7303 36 1 2.2058 1.1900 -6.7714 37 1 3.9602 2.5314 -5.7055 38 1 6.6392 3.1942 -6.0099 39 1 5.1354 -1.2970 0.1135 40 1 3.8183 -2.4994 0.1410 41 1 3.1264 -2.1836 2.8800 42 1 4.8495 -1.8080 2.5347 43 1 2.7524 -0.0585 3.9316 44 1 4.4384 -0.3845 4.4347 45 1 4.9511 0.7666 0.8936 46 1 3.3012 1.4300 1.0375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601548457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:54 Heat of formation + Delta-G solvation = -94.935980 kcal Electronic energy + Delta-G solvation = -30095.955953 eV Core-core repulsion = 26143.548786 eV Total energy + Delta-G solvation = -3952.407167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84363 -38.95737 -37.59855 -36.78909 -34.37863 -33.72649 -33.41152 -30.65388 -30.28221 -29.76048 -28.95146 -26.52591 -25.93512 -25.08166 -23.07383 -22.02167 -21.69372 -20.98805 -19.86192 -18.71141 -17.38524 -17.34682 -16.64227 -16.23393 -15.93969 -15.34681 -15.23966 -15.05350 -14.50745 -14.38162 -14.21545 -13.98466 -13.57101 -13.36345 -13.00009 -12.77569 -12.62203 -12.49285 -12.47480 -12.14863 -11.90445 -11.68567 -11.66326 -11.60643 -11.31686 -11.19099 -11.14996 -11.10217 -10.87547 -10.54119 -10.47123 -10.01745 -9.88165 -9.70490 -9.52908 -9.31947 -8.79518 -8.12122 -7.59602 -7.52032 -6.86609 -4.50562 2.40518 2.76198 3.03280 3.08102 3.18167 3.32642 3.47352 3.79356 3.83960 3.88764 4.37748 4.53873 4.59743 4.71268 4.91385 5.05026 5.10040 5.14904 5.27585 5.39139 5.47800 5.49803 5.58338 5.60418 5.64079 5.77778 5.78629 5.80988 5.87253 5.96286 5.97834 6.00822 6.06058 6.16415 6.27886 6.48566 6.87961 6.91176 6.93524 7.04366 7.15668 7.19333 7.37997 7.60678 7.77724 7.90480 8.00596 8.13066 8.47679 8.71138 8.77686 9.09077 10.05509 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.004990 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.536845 B = 5609.772271 C = 7121.535899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.068 0.932 4 C 0.083 3.917 5 N -0.628 5.628 6 C 0.586 3.414 7 O -0.534 6.534 8 C -0.259 4.259 9 C -0.060 4.060 10 C -0.246 4.246 11 C -0.094 4.094 12 C -0.154 4.154 13 C 0.146 3.854 14 C -0.427 4.427 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.786 5.786 18 Si 0.912 3.088 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.262 1.262 22 C 0.099 3.901 23 C 0.077 3.923 24 C -0.140 4.140 25 C 0.054 3.946 26 O -0.382 6.382 27 C 0.032 3.968 28 O -0.362 6.362 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.284 0.716 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -4.687 10.925 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 H 0.085 0.915 4 C -0.041 4.041 5 N -0.364 5.364 6 C 0.379 3.621 7 O -0.410 6.410 8 C -0.264 4.264 9 C -0.078 4.078 10 C -0.266 4.266 11 C -0.113 4.113 12 C -0.174 4.174 13 C 0.142 3.858 14 C -0.455 4.455 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.410 5.410 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.025 4.025 23 C 0.036 3.964 24 C -0.178 4.178 25 C -0.022 4.022 26 O -0.301 6.301 27 C -0.045 4.045 28 O -0.282 6.282 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.271 -4.499 10.971 13.909 hybrid contribution 0.522 0.297 -0.131 0.615 sum -6.748 -4.203 10.839 13.442 Atomic orbital electron populations 1.21694 0.92114 1.03016 1.02877 1.22646 0.95386 0.96098 0.84964 0.91450 1.22491 0.80736 1.01276 0.99563 1.48292 1.06533 1.65191 1.16379 1.18608 0.85758 0.74551 0.83143 1.90690 1.14646 1.53687 1.82024 1.19341 1.07660 1.00577 0.98820 1.20594 0.94693 0.97089 0.95456 1.20269 1.06523 1.00639 0.99140 1.20812 0.97198 0.95276 0.97998 1.21431 0.97023 1.01112 0.97799 1.17378 0.89515 0.88286 0.90633 1.19592 1.11015 1.19588 0.95310 0.90265 1.25989 0.97370 0.96358 0.94627 1.69682 1.32221 1.33138 1.05987 0.86277 0.80058 0.80131 0.79931 1.18575 1.20086 1.18645 1.21887 1.00562 0.96868 0.83162 1.22663 0.82677 0.95146 0.95934 1.23179 1.02985 0.98939 0.92689 1.23373 0.99871 0.84452 0.94531 1.88453 1.84617 1.39920 1.17111 1.23700 1.01704 0.96280 0.82779 1.87760 1.18968 1.77684 1.43739 0.91695 0.91717 0.90389 0.87103 0.91530 0.89074 0.89087 0.89080 0.85700 0.90450 0.87974 0.91233 0.88682 0.88702 0.91889 0.89723 0.89691 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.57 37.16 0.36 -1.11 16 2 C 0.07 0.91 3.18 -26.59 -0.08 0.82 16 3 H 0.07 1.00 6.28 -51.93 -0.33 0.67 16 4 C 0.08 1.25 4.67 -3.53 -0.02 1.23 16 5 N -0.63 -11.26 2.96 -173.93 -0.51 -11.77 16 6 C 0.59 13.29 6.55 -12.51 -0.08 13.21 16 7 O -0.53 -13.89 15.25 5.27 0.08 -13.81 16 8 C -0.26 -6.13 4.89 -104.37 -0.51 -6.64 16 9 C -0.06 -1.24 7.59 -39.22 -0.30 -1.54 16 10 C -0.25 -5.07 10.03 -39.37 -0.39 -5.46 16 11 C -0.09 -2.06 10.01 -39.60 -0.40 -2.45 16 12 C -0.15 -3.81 8.66 -38.88 -0.34 -4.15 16 13 C 0.15 3.78 5.58 -106.54 -0.59 3.18 16 14 C -0.43 -11.36 7.90 -37.81 -0.30 -11.66 16 15 H 0.08 2.15 6.99 -52.49 -0.37 1.78 16 16 C 0.08 1.91 5.26 -17.30 -0.09 1.82 16 17 N -0.79 -19.96 10.80 55.56 0.60 -19.36 16 18 Si 0.91 19.18 29.58 -169.99 -5.03 14.15 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 22 C 0.10 1.52 5.22 -3.89 -0.02 1.50 16 23 C 0.08 1.06 0.81 -89.72 -0.07 0.99 16 24 C -0.14 -1.51 6.29 -24.79 -0.16 -1.67 16 25 C 0.05 0.62 7.79 38.26 0.30 0.91 16 26 O -0.38 -5.85 11.37 -35.23 -0.40 -6.25 16 27 C 0.03 0.50 6.92 37.50 0.26 0.76 16 28 O -0.36 -5.03 9.91 -35.23 -0.35 -5.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 1.81 5.31 -51.93 -0.28 1.54 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.68 7.31 -52.49 -0.38 1.29 16 35 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 37 H 0.13 3.17 6.17 -52.49 -0.32 2.84 16 38 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 39 H 0.10 1.71 6.80 -51.93 -0.35 1.36 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.92 8.00 -51.93 -0.42 0.50 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.48 7.60 -51.93 -0.39 1.08 16 46 H 0.07 1.22 6.08 -51.93 -0.32 0.90 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -29.86 362.17 -9.11 -38.97 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.52 Total: 8.23 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.44 Total: -10.25 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.09 Total: -31.13 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.67 Total: -25.43 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.86 -9.11 -38.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601548457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.966 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds