Wall clock time and date at job start Tue Mar 31 2020 17:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.50883 * 2 1 4 4 C 1.53283 * 109.51669 * 239.89791 * 2 1 3 5 5 N 1.47163 * 108.53403 * 187.02156 * 4 2 1 6 6 C 1.34776 * 121.07196 * 231.24412 * 5 4 2 7 7 O 1.21603 * 120.00396 * 174.64056 * 6 5 4 8 8 C 1.47437 * 119.99499 * 354.63826 * 6 5 4 9 9 C 1.39225 * 120.28214 * 311.81520 * 8 6 5 10 10 C 1.38220 * 120.08856 * 180.02562 * 9 8 6 11 11 C 1.38825 * 120.67745 * 0.02562 * 10 9 8 12 12 C 1.37591 * 120.57315 * 0.02562 * 11 10 9 13 13 C 1.40710 * 119.87861 * 359.67825 * 12 11 10 14 14 C 1.40890 * 120.33119 * 180.29823 * 13 12 11 15 15 H 1.07998 * 120.00618 * 151.76796 * 14 13 12 16 16 C 1.40274 * 120.00024 * 331.77436 * 14 13 12 17 17 N 1.30633 * 120.00013 * 349.25203 * 16 14 13 18 18 Si 1.86799 * 120.00385 * 169.24854 * 16 14 13 19 19 H 1.48506 * 109.46542 * 60.00010 * 18 16 14 20 20 H 1.48498 * 109.47044 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47195 * 300.00268 * 18 16 14 22 22 C 1.47309 * 117.86006 * 51.21519 * 5 4 2 23 23 C 1.52434 * 108.44527 * 310.75473 * 22 5 4 24 24 C 1.54602 * 110.13600 * 172.94329 * 23 22 5 25 25 C 1.55078 * 100.87976 * 151.49723 * 24 23 22 26 26 O 1.43716 * 105.20198 * 324.22743 * 25 24 23 27 27 C 1.43426 * 109.93238 * 24.30462 * 26 25 24 28 28 O 1.41971 * 111.29705 * 50.12022 * 23 22 5 29 29 H 1.09003 * 109.46838 * 180.10079 * 1 2 3 30 30 H 1.08993 * 109.47517 * 300.10053 * 1 2 3 31 31 H 1.08996 * 109.47483 * 60.10779 * 1 2 3 32 32 H 1.09005 * 109.62480 * 67.30677 * 4 2 1 33 33 H 1.08998 * 109.62358 * 306.73788 * 4 2 1 34 34 H 1.07996 * 119.95403 * 359.97438 * 9 8 6 35 35 H 1.08001 * 119.65944 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.71408 * 179.97438 * 11 10 9 37 37 H 1.07994 * 120.06282 * 179.97438 * 12 11 10 38 38 H 0.96992 * 120.00248 * 179.97438 * 17 16 14 39 39 H 1.09006 * 109.64284 * 191.06729 * 22 5 4 40 40 H 1.09000 * 109.64320 * 70.44328 * 22 5 4 41 41 H 1.09004 * 111.13517 * 269.39621 * 24 23 22 42 42 H 1.09001 * 111.13809 * 33.59358 * 24 23 22 43 43 H 1.08995 * 110.29553 * 83.15667 * 25 24 23 44 44 H 1.08993 * 110.29379 * 205.29502 * 25 24 23 45 45 H 1.08994 * 109.85999 * 238.35085 * 27 26 25 46 46 H 1.09004 * 109.95908 * 117.33064 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 -1.2499 5 7 3.5036 -0.8613 -1.1456 6 6 4.3122 -0.4723 -2.1512 7 8 5.5193 -0.5028 -2.0074 8 6 3.7331 -0.0097 -3.4257 9 6 2.7362 -0.7513 -4.0540 10 6 2.1965 -0.3143 -5.2491 11 6 2.6381 0.8632 -5.8371 12 6 3.6225 1.6170 -5.2406 13 6 4.1842 1.1975 -4.0206 14 6 5.1883 1.9653 -3.3983 15 1 5.3010 1.9387 -2.3246 16 6 6.0417 2.7645 -4.1734 17 7 6.0494 2.6414 -5.4739 18 14 7.1671 4.0048 -3.3460 19 1 8.0840 3.2978 -2.4161 20 1 7.9622 4.7173 -4.3781 21 1 6.3501 4.9846 -2.5861 22 6 4.0545 -1.4363 0.0937 23 6 3.4235 -0.7179 1.2809 24 6 3.8383 -1.4065 2.6015 25 6 3.7752 -0.2111 3.5873 26 8 4.2211 0.9260 2.8298 27 6 4.0052 0.6965 1.4306 28 8 2.0090 -0.6768 1.1663 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3634 0.5153 0.8890 31 1 -0.3634 0.5121 -0.8909 32 1 1.7910 -0.1445 -2.1380 33 1 1.5855 -1.7123 -1.3132 34 1 2.3848 -1.6697 -3.6075 35 1 1.4232 -0.8947 -5.7303 36 1 2.2058 1.1900 -6.7714 37 1 3.9602 2.5314 -5.7055 38 1 6.6392 3.1942 -6.0099 39 1 5.1354 -1.2970 0.1135 40 1 3.8183 -2.4994 0.1410 41 1 3.1264 -2.1836 2.8800 42 1 4.8495 -1.8080 2.5347 43 1 2.7524 -0.0585 3.9316 44 1 4.4384 -0.3845 4.4347 45 1 4.9511 0.7666 0.8936 46 1 3.3012 1.4300 1.0375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601548457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:53 Heat of formation + Delta-G solvation = -113.488404 kcal Electronic energy + Delta-G solvation = -30096.760446 eV Core-core repulsion = 26143.548786 eV Total energy + Delta-G solvation = -3953.211660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.09132 -40.51772 -38.91443 -38.46608 -35.94945 -35.46695 -34.53618 -32.03468 -31.64764 -31.46479 -30.21667 -27.77932 -27.53246 -26.66931 -24.19113 -23.60659 -22.80097 -22.69064 -21.17992 -20.23584 -19.17791 -18.51789 -18.18824 -17.47017 -17.45245 -16.98183 -16.43519 -16.30395 -16.07319 -15.98460 -15.50559 -15.29947 -14.97635 -14.80671 -14.47228 -14.19972 -14.07975 -14.01918 -13.61336 -13.50047 -13.19196 -13.12804 -13.01210 -12.85633 -12.67682 -12.61764 -12.60066 -12.32138 -12.24837 -12.15323 -11.85591 -11.70933 -11.50035 -11.17413 -11.05958 -10.66854 -10.54733 -9.60118 -9.33970 -9.33547 -8.71379 -6.44260 0.61073 0.99314 1.28382 1.38879 1.45825 1.86149 2.10999 2.13844 2.38093 2.68728 2.75437 3.26569 3.47557 3.59260 3.63468 3.80748 3.90864 3.98168 4.10180 4.20378 4.29068 4.31795 4.36958 4.42730 4.52035 4.52579 4.60759 4.63319 4.74620 4.77822 4.84827 4.86867 4.87872 4.99656 5.03688 5.04894 5.22126 5.28219 5.32444 5.47960 5.57907 5.84221 5.84403 5.97025 6.06092 6.09499 6.23960 6.40966 6.61381 6.82937 6.91382 7.37642 8.22921 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.004990 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.536845 B = 5609.772271 C = 7121.535899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 H 0.045 0.955 4 C 0.080 3.920 5 N -0.621 5.621 6 C 0.581 3.419 7 O -0.582 6.582 8 C -0.272 4.272 9 C -0.055 4.055 10 C -0.232 4.232 11 C -0.092 4.092 12 C -0.181 4.181 13 C 0.116 3.884 14 C -0.466 4.466 15 H 0.055 0.945 16 C 0.039 3.961 17 N -0.814 5.814 18 Si 0.970 3.030 19 H -0.275 1.275 20 H -0.254 1.254 21 H -0.256 1.256 22 C 0.096 3.904 23 C 0.081 3.919 24 C -0.129 4.129 25 C 0.046 3.954 26 O -0.403 6.403 27 C 0.035 3.965 28 O -0.355 6.355 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.291 0.709 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 -6.672 11.827 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.063 0.937 4 C -0.042 4.042 5 N -0.355 5.355 6 C 0.374 3.626 7 O -0.463 6.463 8 C -0.277 4.277 9 C -0.074 4.074 10 C -0.251 4.251 11 C -0.110 4.110 12 C -0.200 4.200 13 C 0.112 3.888 14 C -0.495 4.495 15 H 0.073 0.927 16 C -0.177 4.177 17 N -0.440 5.440 18 Si 0.791 3.209 19 H -0.200 1.200 20 H -0.178 1.178 21 H -0.180 1.180 22 C -0.026 4.026 23 C 0.039 3.961 24 C -0.167 4.167 25 C -0.029 4.029 26 O -0.323 6.323 27 C -0.042 4.042 28 O -0.274 6.274 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.841 -6.497 11.892 16.747 hybrid contribution 1.138 0.774 -0.380 1.428 sum -8.703 -5.723 11.512 15.525 Atomic orbital electron populations 1.21691 0.89167 1.04321 1.03756 1.22698 0.97510 0.94633 0.84235 0.93729 1.22706 0.78757 1.02777 0.99940 1.48227 1.07602 1.63675 1.15996 1.18602 0.85452 0.74513 0.84020 1.90652 1.16683 1.55942 1.82985 1.19654 1.08150 1.00256 0.99598 1.20910 0.93475 0.97584 0.95404 1.20753 1.06157 0.99806 0.98365 1.21168 0.95879 0.95228 0.98723 1.21383 0.98819 1.01624 0.98201 1.17711 0.89964 0.89416 0.91679 1.19569 1.13184 1.22353 0.94352 0.92705 1.26635 0.98299 0.97591 0.95193 1.69707 1.33388 1.34197 1.06721 0.85435 0.78215 0.78069 0.79161 1.20028 1.17801 1.17992 1.22082 0.99617 0.98401 0.82513 1.22648 0.82624 0.93928 0.96855 1.23240 1.04334 0.99032 0.90080 1.23674 1.00997 0.83352 0.94877 1.88432 1.84977 1.42073 1.16774 1.23521 0.99912 0.97602 0.83199 1.87784 1.18568 1.77376 1.43699 0.90090 0.90977 0.89473 0.88384 0.88664 0.85892 0.84986 0.86229 0.87348 0.89767 0.90021 0.88404 0.86080 0.87540 0.91069 0.87159 0.92719 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.57 71.98 0.69 -1.69 16 2 C 0.07 1.73 3.18 30.69 0.10 1.82 16 3 H 0.04 1.36 6.28 -2.39 -0.01 1.34 16 4 C 0.08 2.29 4.67 86.35 0.40 2.69 16 5 N -0.62 -22.24 2.96 -822.44 -2.43 -24.68 16 6 C 0.58 27.30 6.55 86.67 0.57 27.87 16 7 O -0.58 -32.17 15.25 -4.04 -0.06 -32.23 16 8 C -0.27 -13.12 4.89 -19.70 -0.10 -13.21 16 9 C -0.06 -2.20 7.59 22.50 0.17 -2.03 16 10 C -0.23 -8.81 10.03 22.41 0.22 -8.58 16 11 C -0.09 -3.87 10.01 22.26 0.22 -3.65 16 12 C -0.18 -9.17 8.66 22.72 0.20 -8.97 16 13 C 0.12 6.28 5.58 -21.11 -0.12 6.16 16 14 C -0.47 -26.58 7.90 23.41 0.18 -26.39 16 15 H 0.05 3.26 6.99 -2.91 -0.02 3.24 16 16 C 0.04 2.06 5.26 85.37 0.45 2.51 16 17 N -0.81 -43.31 10.80 21.88 0.24 -43.07 16 18 Si 0.97 41.45 29.58 68.60 2.03 43.48 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 22 C 0.10 2.92 5.22 86.04 0.45 3.37 16 23 C 0.08 2.15 0.81 -10.21 -0.01 2.14 16 24 C -0.13 -2.45 6.29 31.85 0.20 -2.25 16 25 C 0.05 0.96 7.79 72.69 0.57 1.53 16 26 O -0.40 -12.38 11.37 -148.98 -1.69 -14.07 16 27 C 0.03 1.14 6.92 72.21 0.50 1.64 16 28 O -0.36 -9.07 9.91 -148.97 -1.48 -10.54 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 3.08 5.31 -2.38 -0.01 3.06 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.12 4.07 7.31 -2.91 -0.02 4.05 16 35 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.11 5.77 6.17 -2.91 -0.02 5.75 16 38 H 0.29 13.97 8.29 -92.71 -0.77 13.20 16 39 H 0.08 2.84 6.80 -2.38 -0.02 2.83 16 40 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.11 1.79 8.00 -2.39 -0.02 1.77 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 2.09 7.60 -2.39 -0.02 2.07 16 46 H 0.06 2.08 6.08 -2.38 -0.01 2.07 16 Total: -1.00 -70.09 362.17 2.29 -67.79 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.99 Total: 30.38 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.70 Total: -17.05 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -2.20 Total: -67.75 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -3.23 Total: -56.84 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -70.09 2.29 -67.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601548457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.696 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds