Wall clock time and date at job start Tue Mar 31 2020 17:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99649 * 2 1 4 4 O 1.20826 * 120.00100 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00201 * 179.97438 * 3 2 1 6 6 C 1.52995 * 110.30828 * 299.28345 * 5 3 2 7 7 C 1.54386 * 110.34007 * 61.46041 * 5 3 2 8 8 N 1.48142 * 104.62108 * 95.00279 * 7 5 3 9 9 C 1.34777 * 127.83855 * 219.58241 * 8 7 5 10 10 O 1.21604 * 119.99978 * 5.09030 * 9 8 7 11 11 C 1.47437 * 119.99942 * 185.08608 * 9 8 7 12 12 C 1.39221 * 120.28081 * 36.76754 * 11 9 8 13 13 C 1.38220 * 120.08888 * 179.97438 * 12 11 9 14 14 C 1.38820 * 120.67988 * 0.02562 * 13 12 11 15 15 C 1.37601 * 120.57056 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.87891 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32818 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00011 * 210.58732 * 17 16 15 19 19 C 1.40272 * 119.99959 * 30.58799 * 17 16 15 20 20 N 1.30629 * 119.99887 * 12.07093 * 19 17 16 21 21 Si 1.86794 * 120.00035 * 192.07070 * 19 17 16 22 22 H 1.48500 * 109.47251 * 90.00207 * 21 19 17 23 23 H 1.48503 * 109.47461 * 209.99971 * 21 19 17 24 24 H 1.48495 * 109.47335 * 329.99902 * 21 19 17 25 25 C 1.48151 * 104.32303 * 39.84637 * 8 7 5 26 26 C 1.54283 * 110.34401 * 176.99476 * 5 3 2 27 27 H 1.09000 * 110.34446 * 0.10477 * 26 5 3 28 28 C 1.52997 * 110.34446 * 122.26228 * 26 5 3 29 29 H 1.09009 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47178 * 299.99191 * 1 2 3 31 31 H 1.09001 * 109.47447 * 60.00169 * 1 2 3 32 32 H 1.08992 * 109.47450 * 180.71976 * 6 5 3 33 33 H 1.09001 * 109.46919 * 300.72130 * 6 5 3 34 34 H 1.09000 * 109.47193 * 60.71939 * 6 5 3 35 35 H 1.09004 * 110.40829 * 336.21596 * 7 5 3 36 36 H 1.09001 * 110.40816 * 213.78866 * 7 5 3 37 37 H 1.08003 * 119.95657 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.66226 * 180.28472 * 13 12 11 39 39 H 1.08002 * 119.72191 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.06043 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99733 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.40290 * 78.93548 * 25 8 7 43 43 H 1.08999 * 110.40337 * 201.37007 * 25 8 7 44 44 H 1.08996 * 109.47134 * 59.99804 * 28 26 5 45 45 H 1.09004 * 109.47193 * 179.97438 * 28 26 5 46 46 H 1.08996 * 109.47115 * 299.99797 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.1328 0.6022 1.2524 7 6 4.1389 0.6122 -1.2708 8 7 4.3280 1.7312 -2.2230 9 6 4.0914 1.7366 -3.5498 10 8 3.5843 0.7674 -4.0810 11 6 4.4472 2.9178 -4.3572 12 6 5.5997 3.6438 -4.0691 13 6 5.9298 4.7502 -4.8290 14 6 5.1217 5.1517 -5.8839 15 6 3.9764 4.4544 -6.1929 16 6 3.6177 3.3245 -5.4350 17 6 2.4468 2.6038 -5.7427 18 1 1.9031 2.0970 -4.9593 19 6 1.9873 2.5446 -7.0667 20 7 2.7551 2.9487 -8.0432 21 14 0.2775 1.8878 -7.4335 22 1 -0.6987 3.0065 -7.4070 23 1 0.2680 1.2544 -8.7766 24 1 -0.0962 0.8804 -6.4085 25 6 4.8426 2.8408 -1.3871 26 6 4.0261 2.7457 -0.0754 27 1 3.1636 3.4112 -0.1112 28 6 4.9118 3.0887 1.1241 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 5.2200 0.6784 1.2454 33 1 3.7397 1.0973 2.1404 34 1 3.8422 -0.4482 1.2635 35 1 3.4317 -0.1134 -1.6726 36 1 5.0934 0.1333 -1.0527 37 1 6.2366 3.3421 -3.2508 38 1 6.8279 5.3057 -4.6023 39 1 5.3941 6.0188 -6.4673 40 1 3.3539 4.7737 -7.0156 41 1 2.4375 2.9074 -8.9588 42 1 5.9053 2.7045 -1.1868 43 1 4.6668 3.7986 -1.8768 44 1 5.7889 2.4416 1.1250 45 1 5.2287 4.1295 1.0560 46 1 4.3492 2.9394 2.0456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601710191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:37 Heat of formation + Delta-G solvation = -94.646992 kcal Electronic energy + Delta-G solvation = -29653.774597 eV Core-core repulsion = 25701.379962 eV Total energy + Delta-G solvation = -3952.394635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05855 -39.29646 -37.87432 -36.59249 -36.21458 -33.83564 -33.15162 -31.34095 -30.01884 -29.55119 -27.78109 -26.86204 -25.78725 -25.34188 -24.11861 -21.98365 -21.39205 -20.91581 -18.95262 -18.79029 -17.32675 -17.26706 -17.03197 -16.40382 -15.94121 -15.46281 -15.30043 -14.89854 -14.36389 -14.27261 -14.05794 -13.65717 -13.61507 -13.18052 -12.96029 -12.76992 -12.46927 -12.36431 -12.19225 -12.09927 -12.02411 -11.96476 -11.63048 -11.59390 -11.17925 -11.15889 -11.02434 -10.84862 -10.78476 -10.69549 -10.54071 -10.47045 -10.26941 -9.95051 -9.64405 -9.26402 -8.68377 -8.18040 -7.55707 -7.41981 -6.81198 -4.40590 2.24296 2.43163 2.67977 2.81212 3.08267 3.14771 3.22612 3.54167 3.95042 3.97052 4.26626 4.49910 4.62583 4.68077 4.91070 5.05890 5.07768 5.17920 5.29311 5.31339 5.41955 5.49568 5.55273 5.58489 5.61496 5.73119 5.80149 5.80961 5.90331 5.98274 6.04212 6.09969 6.15003 6.30391 6.34209 6.44246 6.50301 6.83800 6.98374 7.10973 7.21476 7.46004 7.66637 7.77248 7.89130 7.97406 8.15352 8.28465 8.58052 8.78682 8.86268 9.24385 10.13402 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.004840 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.188944 B = 5784.179847 C = 7550.918925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.500 6.500 5 C -0.066 4.066 6 C -0.135 4.135 7 C 0.119 3.881 8 N -0.634 5.634 9 C 0.598 3.402 10 O -0.532 6.532 11 C -0.256 4.256 12 C -0.058 4.058 13 C -0.248 4.248 14 C -0.093 4.093 15 C -0.153 4.153 16 C 0.148 3.852 17 C -0.422 4.422 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.787 5.787 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.260 1.260 25 C 0.109 3.891 26 C -0.101 4.101 27 H 0.103 0.897 28 C -0.141 4.141 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.283 0.717 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 -2.524 16.380 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.387 6.387 5 C -0.068 4.068 6 C -0.193 4.193 7 C -0.005 4.005 8 N -0.371 5.371 9 C 0.393 3.607 10 O -0.409 6.409 11 C -0.260 4.260 12 C -0.076 4.076 13 C -0.268 4.268 14 C -0.112 4.112 15 C -0.173 4.173 16 C 0.144 3.856 17 C -0.450 4.450 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.412 5.412 21 Si 0.737 3.263 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.183 1.183 25 C -0.014 4.014 26 C -0.121 4.121 27 H 0.122 0.878 28 C -0.199 4.199 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.049 -2.764 15.651 15.928 hybrid contribution -0.887 -0.223 -0.284 0.958 sum 0.162 -2.987 15.367 15.655 Atomic orbital electron populations 1.23268 0.76381 1.03621 1.02577 1.86474 1.23370 1.33314 1.84058 1.23424 0.91643 0.81339 0.71720 1.90636 1.66773 1.36336 1.44907 1.21499 0.87370 0.99084 0.98837 1.21909 1.01949 1.00702 0.94720 1.22180 1.00982 0.90941 0.86424 1.49098 1.68102 1.13096 1.06788 1.18251 0.76169 0.87908 0.78404 1.90713 1.43434 1.36532 1.70186 1.19343 1.00685 1.00254 1.05756 1.20710 0.95353 0.94269 0.97305 1.20263 1.02483 1.01941 1.02064 1.20796 0.95485 0.98415 0.96461 1.21315 0.98040 0.95816 1.02091 1.17398 0.90497 0.89747 0.87924 1.19698 1.06451 1.25230 0.93634 0.89830 1.25991 0.98918 0.93521 0.95943 1.69710 1.35705 1.34869 1.00937 0.86221 0.81648 0.79891 0.78575 1.19202 1.20057 1.18339 1.22590 0.96699 0.92763 0.89376 1.22406 1.00242 0.93604 0.95820 0.87837 1.21906 0.99225 1.01890 0.96847 0.88129 0.92086 0.91670 0.90236 0.91602 0.91278 0.89330 0.90247 0.88820 0.89105 0.89103 0.86260 0.90609 0.91395 0.88967 0.91948 0.91931 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.05 10.26 -39.25 -0.40 -5.45 16 3 C 0.48 7.40 6.54 36.01 0.24 7.64 16 4 O -0.50 -9.08 15.01 -18.75 -0.28 -9.36 16 5 C -0.07 -0.85 0.97 -154.26 -0.15 -1.00 16 6 C -0.14 -1.20 7.21 37.15 0.27 -0.93 16 7 C 0.12 1.81 6.14 -2.41 -0.01 1.79 16 8 N -0.63 -11.91 3.31 -170.31 -0.56 -12.47 16 9 C 0.60 14.42 7.13 -12.51 -0.09 14.33 16 10 O -0.53 -14.67 15.25 5.27 0.08 -14.59 16 11 C -0.26 -6.39 5.50 -104.37 -0.57 -6.96 16 12 C -0.06 -1.25 7.91 -39.22 -0.31 -1.56 16 13 C -0.25 -5.31 10.03 -39.37 -0.39 -5.70 16 14 C -0.09 -2.11 10.01 -39.60 -0.40 -2.51 16 15 C -0.15 -3.95 8.64 -38.88 -0.34 -4.28 16 16 C 0.15 4.05 5.54 -106.54 -0.59 3.46 16 17 C -0.42 -11.84 7.68 -37.81 -0.29 -12.14 16 18 H 0.08 2.44 6.75 -52.49 -0.35 2.09 16 19 C 0.08 1.97 5.22 -17.30 -0.09 1.88 16 20 N -0.79 -20.71 11.04 55.56 0.61 -20.10 16 21 Si 0.91 19.93 29.58 -169.99 -5.03 14.90 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 25 C 0.11 1.62 4.81 -2.19 -0.01 1.61 16 26 C -0.10 -1.30 3.27 -89.00 -0.29 -1.59 16 27 H 0.10 1.58 6.47 -51.93 -0.34 1.24 16 28 C -0.14 -1.27 7.94 37.16 0.30 -0.97 16 29 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.08 0.57 6.62 -51.93 -0.34 0.23 16 33 H 0.07 0.53 6.99 -51.93 -0.36 0.17 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.53 7.35 -51.93 -0.38 1.15 16 36 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 37 H 0.09 1.74 6.36 -52.48 -0.33 1.40 16 38 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.12 3.13 6.41 -52.49 -0.34 2.80 16 41 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 42 H 0.07 0.84 7.63 -51.93 -0.40 0.45 16 43 H 0.09 1.51 6.45 -51.93 -0.33 1.18 16 44 H 0.06 0.47 6.68 -51.93 -0.35 0.12 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.49 6.89 -51.93 -0.36 0.13 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -33.03 368.42 -8.09 -41.12 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.39 Total: 5.88 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.67 Total: -5.47 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.05 Total: -32.57 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.60 Total: -29.41 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.03 -8.09 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601710191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.527 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds