Wall clock time and date at job start Tue Mar 31 2020 17:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 116.99649 * 2 1 4 4 O 1.20826 * 120.00100 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00201 * 179.97438 * 3 2 1 6 6 C 1.52995 * 110.30828 * 299.28345 * 5 3 2 7 7 C 1.54386 * 110.34007 * 61.46041 * 5 3 2 8 8 N 1.48142 * 104.62108 * 95.00279 * 7 5 3 9 9 C 1.34777 * 127.83855 * 219.58241 * 8 7 5 10 10 O 1.21604 * 119.99978 * 5.09030 * 9 8 7 11 11 C 1.47437 * 119.99942 * 185.08608 * 9 8 7 12 12 C 1.39221 * 120.28081 * 36.76754 * 11 9 8 13 13 C 1.38220 * 120.08888 * 179.97438 * 12 11 9 14 14 C 1.38820 * 120.67988 * 0.02562 * 13 12 11 15 15 C 1.37601 * 120.57056 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.87891 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32818 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00011 * 210.58732 * 17 16 15 19 19 C 1.40272 * 119.99959 * 30.58799 * 17 16 15 20 20 N 1.30629 * 119.99887 * 12.07093 * 19 17 16 21 21 Si 1.86794 * 120.00035 * 192.07070 * 19 17 16 22 22 H 1.48500 * 109.47251 * 90.00207 * 21 19 17 23 23 H 1.48503 * 109.47461 * 209.99971 * 21 19 17 24 24 H 1.48495 * 109.47335 * 329.99902 * 21 19 17 25 25 C 1.48151 * 104.32303 * 39.84637 * 8 7 5 26 26 C 1.54283 * 110.34401 * 176.99476 * 5 3 2 27 27 H 1.09000 * 110.34446 * 0.10477 * 26 5 3 28 28 C 1.52997 * 110.34446 * 122.26228 * 26 5 3 29 29 H 1.09009 * 109.46910 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47178 * 299.99191 * 1 2 3 31 31 H 1.09001 * 109.47447 * 60.00169 * 1 2 3 32 32 H 1.08992 * 109.47450 * 180.71976 * 6 5 3 33 33 H 1.09001 * 109.46919 * 300.72130 * 6 5 3 34 34 H 1.09000 * 109.47193 * 60.71939 * 6 5 3 35 35 H 1.09004 * 110.40829 * 336.21596 * 7 5 3 36 36 H 1.09001 * 110.40816 * 213.78866 * 7 5 3 37 37 H 1.08003 * 119.95657 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.66226 * 180.28472 * 13 12 11 39 39 H 1.08002 * 119.72191 * 179.97438 * 14 13 12 40 40 H 1.07997 * 120.06043 * 180.02562 * 15 14 13 41 41 H 0.97004 * 119.99733 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.40290 * 78.93548 * 25 8 7 43 43 H 1.08999 * 110.40337 * 201.37007 * 25 8 7 44 44 H 1.08996 * 109.47134 * 59.99804 * 28 26 5 45 45 H 1.09004 * 109.47193 * 179.97438 * 28 26 5 46 46 H 1.08996 * 109.47115 * 299.99797 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.1328 0.6022 1.2524 7 6 4.1389 0.6122 -1.2708 8 7 4.3280 1.7312 -2.2230 9 6 4.0914 1.7366 -3.5498 10 8 3.5843 0.7674 -4.0810 11 6 4.4472 2.9178 -4.3572 12 6 5.5997 3.6438 -4.0691 13 6 5.9298 4.7502 -4.8290 14 6 5.1217 5.1517 -5.8839 15 6 3.9764 4.4544 -6.1929 16 6 3.6177 3.3245 -5.4350 17 6 2.4468 2.6038 -5.7427 18 1 1.9031 2.0970 -4.9593 19 6 1.9873 2.5446 -7.0667 20 7 2.7551 2.9487 -8.0432 21 14 0.2775 1.8878 -7.4335 22 1 -0.6987 3.0065 -7.4070 23 1 0.2680 1.2544 -8.7766 24 1 -0.0962 0.8804 -6.4085 25 6 4.8426 2.8408 -1.3871 26 6 4.0261 2.7457 -0.0754 27 1 3.1636 3.4112 -0.1112 28 6 4.9118 3.0887 1.1241 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 5.2200 0.6784 1.2454 33 1 3.7397 1.0973 2.1404 34 1 3.8422 -0.4482 1.2635 35 1 3.4317 -0.1134 -1.6726 36 1 5.0934 0.1333 -1.0527 37 1 6.2366 3.3421 -3.2508 38 1 6.8279 5.3057 -4.6023 39 1 5.3941 6.0188 -6.4673 40 1 3.3539 4.7737 -7.0156 41 1 2.4375 2.9074 -8.9588 42 1 5.9053 2.7045 -1.1868 43 1 4.6668 3.7986 -1.8768 44 1 5.7889 2.4416 1.1250 45 1 5.2287 4.1295 1.0560 46 1 4.3492 2.9394 2.0456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601710191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:35 Heat of formation + Delta-G solvation = -114.677425 kcal Electronic energy + Delta-G solvation = -29654.643182 eV Core-core repulsion = 25701.379962 eV Total energy + Delta-G solvation = -3953.263220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26334 -40.82020 -39.37396 -38.33338 -37.52878 -35.70022 -34.56269 -32.39310 -31.85291 -31.33302 -28.77067 -28.18801 -27.15666 -26.75095 -25.41374 -23.52425 -22.80327 -22.65128 -20.50437 -20.00693 -19.15167 -18.52439 -18.36850 -17.57757 -17.44617 -17.28817 -16.79734 -16.38290 -16.04026 -15.43545 -15.32038 -15.03086 -14.90125 -14.53064 -14.48434 -14.13800 -14.00934 -13.90807 -13.52498 -13.42662 -13.10688 -13.04196 -13.01514 -12.93683 -12.85055 -12.66351 -12.38756 -12.29597 -12.14349 -11.91320 -11.86397 -11.78069 -11.49331 -11.48774 -11.40546 -11.16964 -10.54061 -9.73790 -9.39263 -9.31466 -8.73509 -6.43084 0.56178 0.98188 1.02470 1.25522 1.38412 1.43616 1.62190 2.00379 2.13926 2.22404 2.68420 3.19756 3.40011 3.64520 3.68605 3.91745 4.07545 4.15047 4.18156 4.19466 4.28151 4.40037 4.49300 4.53428 4.55638 4.61225 4.65486 4.70573 4.77413 4.80517 4.87583 4.99830 5.05094 5.16369 5.18079 5.19731 5.26876 5.29882 5.35570 5.36751 5.56037 5.59104 5.83073 5.98755 6.07869 6.26997 6.52337 6.57878 6.67469 6.83181 6.91620 7.45229 8.23561 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.004840 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.188944 B = 5784.179847 C = 7550.918925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.537 6.537 5 C -0.060 4.060 6 C -0.130 4.130 7 C 0.114 3.886 8 N -0.635 5.635 9 C 0.589 3.411 10 O -0.586 6.586 11 C -0.274 4.274 12 C -0.052 4.052 13 C -0.234 4.234 14 C -0.090 4.090 15 C -0.181 4.181 16 C 0.115 3.885 17 C -0.464 4.464 18 H 0.051 0.949 19 C 0.037 3.963 20 N -0.816 5.816 21 Si 0.973 3.027 22 H -0.251 1.251 23 H -0.256 1.256 24 H -0.278 1.278 25 C 0.104 3.896 26 C -0.096 4.096 27 H 0.071 0.929 28 C -0.134 4.134 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.291 0.709 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -2.226 19.052 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.426 6.426 5 C -0.062 4.062 6 C -0.186 4.186 7 C -0.008 4.008 8 N -0.369 5.369 9 C 0.383 3.617 10 O -0.466 6.466 11 C -0.279 4.279 12 C -0.071 4.071 13 C -0.253 4.253 14 C -0.108 4.108 15 C -0.201 4.201 16 C 0.111 3.889 17 C -0.493 4.493 18 H 0.070 0.930 19 C -0.178 4.178 20 N -0.442 5.442 21 Si 0.794 3.206 22 H -0.175 1.175 23 H -0.180 1.180 24 H -0.203 1.203 25 C -0.018 4.018 26 C -0.116 4.116 27 H 0.089 0.911 28 C -0.191 4.191 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.807 -2.443 18.379 18.928 hybrid contribution -1.617 -0.265 -0.961 1.900 sum 2.190 -2.708 17.418 17.763 Atomic orbital electron populations 1.23526 0.75166 1.05769 1.02035 1.86472 1.24719 1.32805 1.83573 1.24176 0.93029 0.81101 0.70647 1.90619 1.67849 1.37460 1.46709 1.21639 0.85441 0.99443 0.99654 1.21985 1.03577 1.00603 0.92478 1.22486 1.02428 0.89660 0.86265 1.48990 1.66543 1.15646 1.05766 1.18233 0.76065 0.87078 0.80278 1.90665 1.45830 1.38165 1.71980 1.19730 1.01632 1.00955 1.05546 1.21088 0.94229 0.93698 0.98070 1.20802 1.02991 1.01261 1.00242 1.21188 0.94188 0.98629 0.96833 1.21260 0.99748 0.96528 1.02542 1.17782 0.91141 0.90486 0.89470 1.19595 1.08191 1.27471 0.94042 0.93041 1.26655 1.02275 0.93677 0.95209 1.69724 1.37004 1.36128 1.01332 0.85349 0.77495 0.79265 0.78465 1.17546 1.17954 1.20269 1.22930 0.99138 0.90528 0.89230 1.22354 0.99674 0.92848 0.96682 0.91078 1.21909 0.99298 1.02978 0.94899 0.84686 0.90818 0.94041 0.87216 0.90289 0.90705 0.92301 0.86219 0.84980 0.84632 0.86039 0.87943 0.89772 0.87211 0.90882 0.89225 0.91183 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.36 -10.33 10.26 -51.38 -0.53 -10.86 16 3 C 0.47 14.69 6.54 71.24 0.47 15.15 16 4 O -0.54 -20.36 15.01 21.96 0.33 -20.03 16 5 C -0.06 -1.44 0.97 -52.02 -0.05 -1.49 16 6 C -0.13 -1.76 7.21 71.98 0.52 -1.24 16 7 C 0.11 3.36 6.14 86.53 0.53 3.89 16 8 N -0.64 -23.73 3.31 -811.00 -2.68 -26.41 16 9 C 0.59 29.59 7.13 86.67 0.62 30.21 16 10 O -0.59 -34.55 15.25 -4.04 -0.06 -34.61 16 11 C -0.27 -14.06 5.50 -19.70 -0.11 -14.17 16 12 C -0.05 -2.17 7.91 22.50 0.18 -2.00 16 13 C -0.23 -9.26 10.03 22.40 0.22 -9.03 16 14 C -0.09 -3.97 10.01 22.26 0.22 -3.75 16 15 C -0.18 -9.65 8.64 22.72 0.20 -9.46 16 16 C 0.11 6.61 5.54 -21.11 -0.12 6.49 16 17 C -0.46 -28.16 7.68 23.41 0.18 -27.98 16 18 H 0.05 3.33 6.75 -2.91 -0.02 3.31 16 19 C 0.04 2.08 5.22 85.37 0.45 2.52 16 20 N -0.82 -45.07 11.04 21.88 0.24 -44.83 16 21 Si 0.97 43.30 29.58 68.60 2.03 45.32 16 22 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.10 2.84 4.81 86.67 0.42 3.26 16 26 C -0.10 -2.28 3.27 -9.75 -0.03 -2.31 16 27 H 0.07 2.18 6.47 -2.39 -0.02 2.17 16 28 C -0.13 -1.79 7.94 71.98 0.57 -1.21 16 29 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.04 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.11 0.88 6.62 -2.39 -0.02 0.86 16 33 H 0.08 0.93 6.99 -2.39 -0.02 0.91 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 2.09 7.35 -2.39 -0.02 2.08 16 36 H 0.12 2.58 7.86 -2.39 -0.02 2.57 16 37 H 0.13 4.37 6.36 -2.91 -0.02 4.35 16 38 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.10 5.68 6.41 -2.91 -0.02 5.66 16 41 H 0.29 14.42 8.29 -92.71 -0.77 13.65 16 42 H 0.11 2.14 7.63 -2.39 -0.02 2.12 16 43 H 0.07 2.30 6.45 -2.39 -0.02 2.28 16 44 H 0.09 0.76 6.68 -2.39 -0.02 0.74 16 45 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.07 0.84 6.89 -2.39 -0.02 0.83 16 Total: -1.00 -81.33 368.42 5.79 -75.54 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.00 Total: 25.15 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.46 Total: -9.26 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -2.44 Total: -71.24 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -0.26 Total: -65.51 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.33 5.79 -75.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601710191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.137 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds