Wall clock time and date at job start Tue Mar 31 2020 15:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47243 * 2 1 4 4 H 1.08999 * 109.46958 * 54.99896 * 3 2 1 5 5 C 1.52999 * 109.46663 * 294.99491 * 3 2 1 6 6 C 1.50698 * 109.47169 * 174.99544 * 3 2 1 7 7 O 1.21289 * 119.99925 * 28.29625 * 6 3 2 8 8 N 1.34770 * 120.00191 * 208.29284 * 6 3 2 9 9 C 1.46686 * 121.33260 * 6.33658 * 8 6 3 10 10 C 1.50812 * 109.67295 * 224.39582 * 9 8 6 11 11 C 1.38838 * 117.80621 * 168.47225 * 10 9 8 12 12 C 1.37957 * 120.50748 * 179.50311 * 11 10 9 13 13 C 1.38270 * 119.71294 * 359.91871 * 12 11 10 14 14 C 1.37906 * 119.83105 * 0.27459 * 13 12 11 15 15 C 1.37673 * 122.34552 * 348.39768 * 10 9 8 16 16 C 1.50594 * 122.86432 * 1.52278 * 15 10 9 17 17 C 1.47230 * 121.33675 * 186.05327 * 8 6 3 18 18 H 1.09007 * 109.76939 * 235.41489 * 17 8 6 19 19 C 1.50698 * 109.77332 * 356.20166 * 17 8 6 20 20 O 1.21211 * 120.00386 * 288.14570 * 19 17 8 21 21 O 1.34308 * 120.00070 * 108.13696 * 19 17 8 22 22 C 1.34920 * 117.00559 * 180.02562 * 21 19 17 23 23 H 1.08005 * 119.99481 * 0.02562 * 22 21 19 24 24 C 1.38749 * 120.00300 * 180.02562 * 22 21 19 25 25 N 1.31441 * 120.00440 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00077 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46841 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47072 * 119.99945 * 26 24 22 29 29 H 1.48497 * 109.47283 * 240.00170 * 26 24 22 30 30 H 1.08997 * 109.47669 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46981 * 60.00314 * 1 2 3 32 32 H 1.08996 * 109.47846 * 300.00764 * 1 2 3 33 33 H 1.09002 * 109.46981 * 119.99685 * 2 1 3 34 34 H 1.08993 * 109.47827 * 239.99757 * 2 1 3 35 35 H 1.09000 * 109.46754 * 172.33347 * 5 3 2 36 36 H 1.08995 * 109.47287 * 292.33390 * 5 3 2 37 37 H 1.08996 * 109.47151 * 52.33795 * 5 3 2 38 38 H 1.08994 * 109.43523 * 344.45132 * 9 8 6 39 39 H 1.08998 * 109.43867 * 104.33536 * 9 8 6 40 40 H 1.07998 * 119.74546 * 359.51794 * 11 10 9 41 41 H 1.07993 * 120.14440 * 179.90554 * 12 11 10 42 42 H 1.08010 * 120.08471 * 180.24580 * 13 12 11 43 43 H 1.08002 * 119.71102 * 180.02562 * 14 13 12 44 44 H 1.08996 * 109.20136 * 100.14855 * 16 15 10 45 45 H 1.08991 * 109.20734 * 219.49651 * 16 15 10 46 46 H 0.96998 * 120.00526 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1861 0.5061 -0.2953 8 7 4.1692 2.4885 0.7006 9 6 3.4158 3.5728 1.3395 10 6 4.0007 4.9033 0.9367 11 6 3.2770 6.0481 1.2425 12 6 3.7646 7.2948 0.9089 13 6 4.9842 7.4043 0.2667 14 6 5.7020 6.2677 -0.0411 15 6 5.2102 5.0101 0.2880 16 6 6.0356 3.8132 -0.1044 17 6 5.6383 2.5835 0.7199 18 1 5.9870 2.6964 1.7464 19 6 6.2375 1.3421 0.1107 20 8 6.1948 0.2906 0.7121 21 8 6.8187 1.4008 -1.0986 22 6 7.3349 0.2537 -1.5866 23 1 7.2691 -0.6566 -1.0092 24 6 7.9501 0.2436 -2.8302 25 7 8.0306 1.3515 -3.5328 26 14 8.6654 -1.3445 -3.5055 27 1 8.4470 -2.4407 -2.5279 28 1 7.9956 -1.6837 -4.7866 29 1 10.1217 -1.1716 -3.7389 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8898 33 1 1.8932 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8774 3.1878 -1.2523 36 1 2.1768 1.6729 -2.1375 37 1 0.5634 2.0060 -1.4638 38 1 2.3734 3.5247 1.0247 39 1 3.4725 3.4647 2.4226 40 1 2.3253 5.9620 1.7455 41 1 3.1962 8.1812 1.1482 42 1 5.3735 8.3776 0.0063 43 1 6.6546 6.3556 -0.5424 44 1 5.8814 3.6028 -1.1627 45 1 7.0893 4.0323 0.0677 46 1 8.4604 1.3444 -4.4023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733532475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:56 Heat of formation + Delta-G solvation = -83.925105 kcal Electronic energy + Delta-G solvation = -29834.777670 eV Core-core repulsion = 25882.847970 eV Total energy + Delta-G solvation = -3951.929699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75813 -39.14751 -38.38660 -36.04713 -35.28763 -34.66866 -32.98797 -31.89223 -31.33190 -30.09230 -29.22051 -26.00742 -25.30500 -25.12619 -24.04456 -22.37881 -21.71843 -20.48941 -20.01095 -18.35155 -17.53966 -17.17966 -16.76758 -15.80422 -15.71506 -15.37190 -14.92924 -14.81981 -14.66742 -14.30816 -14.20037 -14.18391 -13.64044 -13.47610 -13.21381 -13.05151 -12.94218 -12.73972 -12.25453 -12.15769 -12.04072 -11.93413 -11.64946 -11.48523 -11.41376 -11.32916 -11.10803 -11.05074 -10.93312 -10.72118 -10.58448 -10.28896 -10.26893 -9.59876 -8.97016 -8.83732 -8.69967 -8.52571 -8.40356 -8.35978 -6.22716 -3.85842 1.32493 1.38698 2.84165 3.03961 3.25165 3.29795 3.38093 3.73213 3.98161 4.06285 4.47070 4.61122 4.74604 4.78516 4.83966 4.92589 4.99437 5.01680 5.12207 5.23529 5.31104 5.33839 5.35652 5.39464 5.49876 5.52510 5.53835 5.59825 5.67833 5.78215 5.85138 5.92886 6.00179 6.01246 6.06987 6.09334 6.34178 6.39866 6.42166 6.46547 6.53462 6.64204 6.66951 6.94321 7.05031 7.59642 7.64816 8.18780 8.56191 9.02636 9.28134 10.08480 10.96491 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.005137 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.052363 B = 5449.835291 C = 7559.586962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.086 0.914 5 C -0.143 4.143 6 C 0.506 3.494 7 O -0.473 6.473 8 N -0.609 5.609 9 C 0.153 3.847 10 C -0.102 4.102 11 C -0.114 4.114 12 C -0.128 4.128 13 C -0.118 4.118 14 C -0.117 4.117 15 C -0.053 4.053 16 C -0.095 4.095 17 C 0.166 3.834 18 H 0.101 0.899 19 C 0.423 3.577 20 O -0.538 6.538 21 O -0.215 6.215 22 C -0.358 4.358 23 H 0.092 0.908 24 C 0.037 3.963 25 N -0.875 5.875 26 Si 0.938 3.062 27 H -0.267 1.267 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.838 11.504 8.408 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.104 0.896 5 C -0.201 4.201 6 C 0.293 3.707 7 O -0.344 6.344 8 N -0.347 5.347 9 C 0.030 3.970 10 C -0.103 4.103 11 C -0.132 4.132 12 C -0.146 4.146 13 C -0.136 4.136 14 C -0.135 4.135 15 C -0.053 4.053 16 C -0.132 4.132 17 C 0.062 3.938 18 H 0.119 0.881 19 C 0.268 3.732 20 O -0.433 6.433 21 O -0.122 6.122 22 C -0.435 4.435 23 H 0.110 0.890 24 C -0.165 4.165 25 N -0.514 5.514 26 Si 0.763 3.237 27 H -0.191 1.191 28 H -0.204 1.204 29 H -0.204 1.204 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.396 10.700 8.093 18.959 hybrid contribution 0.350 -0.432 -0.285 0.625 sum -13.046 10.268 7.808 18.346 Atomic orbital electron populations 1.21828 0.95583 1.01732 1.01620 1.21380 0.95192 0.94326 1.03807 1.21328 0.91747 0.99167 1.00302 0.89551 1.21786 1.01882 1.00273 0.96130 1.20783 0.90301 0.81783 0.77863 1.90955 1.65491 1.32779 1.45178 1.48016 1.05181 1.22757 1.58769 1.20519 0.95839 0.83128 0.97465 1.19789 0.95185 0.94862 1.00482 1.20938 0.99653 0.91903 1.00728 1.20986 0.96487 0.97149 1.00020 1.21071 0.95195 0.98349 0.99006 1.21259 1.00440 0.91744 1.00041 1.19666 0.94157 0.95063 0.96458 1.20977 0.99403 0.90320 1.02514 1.20825 0.80257 0.93073 0.99655 0.88118 1.22082 0.79879 0.88445 0.82761 1.90551 1.58397 1.30920 1.63399 1.83803 1.61998 1.37637 1.28795 1.21171 1.34107 0.86647 1.01533 0.89043 1.25219 0.97237 0.98687 0.95321 1.69991 1.42584 1.26352 1.12430 0.85684 0.78299 0.80832 0.78871 1.19108 1.20444 1.20438 0.92560 0.92407 0.92934 0.91584 0.90551 0.92266 0.91533 0.91246 0.88408 0.90261 0.86095 0.86222 0.86189 0.85705 0.87640 0.88927 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.68 37.15 0.36 -1.12 16 2 C -0.11 -1.48 4.89 -26.73 -0.13 -1.61 16 3 C -0.10 -1.41 1.95 -91.77 -0.18 -1.59 16 4 H 0.09 0.90 6.24 -51.93 -0.32 0.58 16 5 C -0.14 -1.78 9.06 37.16 0.34 -1.44 16 6 C 0.51 9.59 6.70 -10.99 -0.07 9.52 16 7 O -0.47 -11.86 12.04 -21.47 -0.26 -12.12 16 8 N -0.61 -10.38 2.93 -167.86 -0.49 -10.87 16 9 C 0.15 1.83 5.97 -5.04 -0.03 1.80 16 10 C -0.10 -1.27 5.82 -104.55 -0.61 -1.88 16 11 C -0.11 -1.15 9.62 -39.46 -0.38 -1.53 16 12 C -0.13 -1.26 10.05 -39.67 -0.40 -1.66 16 13 C -0.12 -1.27 10.04 -39.69 -0.40 -1.67 16 14 C -0.12 -1.50 9.59 -39.43 -0.38 -1.88 16 15 C -0.05 -0.77 5.76 -104.60 -0.60 -1.37 16 16 C -0.09 -1.67 4.83 -27.79 -0.13 -1.81 16 17 C 0.17 3.24 3.35 -68.54 -0.23 3.01 16 18 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 19 C 0.42 11.12 4.80 36.00 0.17 11.30 16 20 O -0.54 -15.77 14.49 -27.14 -0.39 -16.16 16 21 O -0.21 -6.37 8.38 -23.26 -0.19 -6.56 16 22 C -0.36 -11.17 9.65 30.92 0.30 -10.88 16 23 H 0.09 2.96 6.86 -52.48 -0.36 2.61 16 24 C 0.04 1.10 5.49 -17.53 -0.10 1.00 16 25 N -0.87 -26.46 13.67 55.48 0.76 -25.70 16 26 Si 0.94 22.68 29.55 -169.99 -5.02 17.66 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.20 8.02 -51.93 -0.42 0.79 16 35 H 0.06 0.70 7.99 -51.93 -0.41 0.28 16 36 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 37 H 0.07 0.68 6.24 -51.93 -0.32 0.35 16 38 H 0.10 0.93 5.54 -51.93 -0.29 0.64 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.12 0.89 8.05 -52.49 -0.42 0.47 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.12 1.51 8.05 -52.49 -0.42 1.09 16 44 H 0.11 2.22 7.46 -51.93 -0.39 1.83 16 45 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -38.04 371.86 -9.10 -47.15 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.63 Total: 2.80 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.47 Total: -1.79 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.27 Total: -36.58 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.85 Total: -34.84 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.04 -9.10 -47.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733532475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.779 kcal (2) G-P(sol) polarization free energy of solvation -38.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds