Wall clock time and date at job start Tue Mar 31 2020 15:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47243 * 2 1 4 4 H 1.08999 * 109.46958 * 54.99896 * 3 2 1 5 5 C 1.52999 * 109.46663 * 294.99491 * 3 2 1 6 6 C 1.50698 * 109.47169 * 174.99544 * 3 2 1 7 7 O 1.21289 * 119.99925 * 28.29625 * 6 3 2 8 8 N 1.34770 * 120.00191 * 208.29284 * 6 3 2 9 9 C 1.46686 * 121.33260 * 6.33658 * 8 6 3 10 10 C 1.50812 * 109.67295 * 224.39582 * 9 8 6 11 11 C 1.38838 * 117.80621 * 168.47225 * 10 9 8 12 12 C 1.37957 * 120.50748 * 179.50311 * 11 10 9 13 13 C 1.38270 * 119.71294 * 359.91871 * 12 11 10 14 14 C 1.37906 * 119.83105 * 0.27459 * 13 12 11 15 15 C 1.37673 * 122.34552 * 348.39768 * 10 9 8 16 16 C 1.50594 * 122.86432 * 1.52278 * 15 10 9 17 17 C 1.47230 * 121.33675 * 186.05327 * 8 6 3 18 18 H 1.09007 * 109.76939 * 235.41489 * 17 8 6 19 19 C 1.50698 * 109.77332 * 356.20166 * 17 8 6 20 20 O 1.21211 * 120.00386 * 288.14570 * 19 17 8 21 21 O 1.34308 * 120.00070 * 108.13696 * 19 17 8 22 22 C 1.34920 * 117.00559 * 180.02562 * 21 19 17 23 23 H 1.08005 * 119.99481 * 0.02562 * 22 21 19 24 24 C 1.38749 * 120.00300 * 180.02562 * 22 21 19 25 25 N 1.31441 * 120.00440 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00077 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46841 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47072 * 119.99945 * 26 24 22 29 29 H 1.48497 * 109.47283 * 240.00170 * 26 24 22 30 30 H 1.08997 * 109.47669 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46981 * 60.00314 * 1 2 3 32 32 H 1.08996 * 109.47846 * 300.00764 * 1 2 3 33 33 H 1.09002 * 109.46981 * 119.99685 * 2 1 3 34 34 H 1.08993 * 109.47827 * 239.99757 * 2 1 3 35 35 H 1.09000 * 109.46754 * 172.33347 * 5 3 2 36 36 H 1.08995 * 109.47287 * 292.33390 * 5 3 2 37 37 H 1.08996 * 109.47151 * 52.33795 * 5 3 2 38 38 H 1.08994 * 109.43523 * 344.45132 * 9 8 6 39 39 H 1.08998 * 109.43867 * 104.33536 * 9 8 6 40 40 H 1.07998 * 119.74546 * 359.51794 * 11 10 9 41 41 H 1.07993 * 120.14440 * 179.90554 * 12 11 10 42 42 H 1.08010 * 120.08471 * 180.24580 * 13 12 11 43 43 H 1.08002 * 119.71102 * 180.02562 * 14 13 12 44 44 H 1.08996 * 109.20136 * 100.14855 * 16 15 10 45 45 H 1.08991 * 109.20734 * 219.49651 * 16 15 10 46 46 H 0.96998 * 120.00526 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 8 4.1861 0.5061 -0.2953 8 7 4.1692 2.4885 0.7006 9 6 3.4158 3.5728 1.3395 10 6 4.0007 4.9033 0.9367 11 6 3.2770 6.0481 1.2425 12 6 3.7646 7.2948 0.9089 13 6 4.9842 7.4043 0.2667 14 6 5.7020 6.2677 -0.0411 15 6 5.2102 5.0101 0.2880 16 6 6.0356 3.8132 -0.1044 17 6 5.6383 2.5835 0.7199 18 1 5.9870 2.6964 1.7464 19 6 6.2375 1.3421 0.1107 20 8 6.1948 0.2906 0.7121 21 8 6.8187 1.4008 -1.0986 22 6 7.3349 0.2537 -1.5866 23 1 7.2691 -0.6566 -1.0092 24 6 7.9501 0.2436 -2.8302 25 7 8.0306 1.3515 -3.5328 26 14 8.6654 -1.3445 -3.5055 27 1 8.4470 -2.4407 -2.5279 28 1 7.9956 -1.6837 -4.7866 29 1 10.1217 -1.1716 -3.7389 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8898 33 1 1.8932 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8774 3.1878 -1.2523 36 1 2.1768 1.6729 -2.1375 37 1 0.5634 2.0060 -1.4638 38 1 2.3734 3.5247 1.0247 39 1 3.4725 3.4647 2.4226 40 1 2.3253 5.9620 1.7455 41 1 3.1962 8.1812 1.1482 42 1 5.3735 8.3776 0.0063 43 1 6.6546 6.3556 -0.5424 44 1 5.8814 3.6028 -1.1627 45 1 7.0893 4.0323 0.0677 46 1 8.4604 1.3444 -4.4023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733532475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:55 Heat of formation + Delta-G solvation = -107.590641 kcal Electronic energy + Delta-G solvation = -29835.803884 eV Core-core repulsion = 25882.847970 eV Total energy + Delta-G solvation = -3952.955914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20424 -40.47944 -40.17015 -37.44874 -36.95195 -36.40340 -34.40066 -33.98637 -32.38849 -31.19253 -30.29522 -27.57977 -27.03801 -26.19047 -25.47810 -23.54693 -22.80858 -21.99367 -21.32848 -19.88574 -19.68277 -18.80851 -17.95286 -17.48325 -17.07566 -16.72698 -16.25893 -16.19889 -16.05083 -15.93360 -15.77472 -15.60792 -14.90085 -14.84601 -14.53626 -14.28907 -14.04011 -13.81374 -13.76909 -13.54907 -13.47278 -13.22356 -13.08130 -12.99855 -12.67739 -12.56185 -12.52817 -12.29632 -12.23390 -12.12590 -11.94257 -11.90028 -11.72916 -11.60452 -10.87455 -10.67593 -10.53231 -9.94117 -9.57722 -9.47472 -8.51874 -6.27184 0.44051 0.50416 1.20224 1.27054 1.41560 1.46265 1.60163 2.09395 2.12370 2.62898 2.85270 3.01429 3.48073 3.54603 3.64456 3.75565 3.79206 3.92252 3.95626 4.04706 4.21340 4.31790 4.40640 4.44642 4.52827 4.53444 4.56534 4.67240 4.68712 4.75484 4.81260 4.85940 4.92386 4.98219 5.09200 5.14922 5.15464 5.17274 5.21326 5.23757 5.34544 5.47950 5.59080 5.65999 5.69747 5.89214 6.13827 6.30037 6.79522 6.94298 7.15581 7.84666 8.69791 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.005137 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.052363 B = 5449.835291 C = 7559.586962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.092 4.092 4 H 0.135 0.865 5 C -0.138 4.138 6 C 0.491 3.509 7 O -0.550 6.550 8 N -0.606 5.606 9 C 0.146 3.854 10 C -0.108 4.108 11 C -0.104 4.104 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.134 4.134 15 C -0.082 4.082 16 C -0.077 4.077 17 C 0.170 3.830 18 H 0.124 0.876 19 C 0.421 3.579 20 O -0.576 6.576 21 O -0.239 6.239 22 C -0.399 4.399 23 H 0.065 0.935 24 C -0.007 4.007 25 N -0.906 5.906 26 Si 1.012 2.988 27 H -0.272 1.272 28 H -0.261 1.261 29 H -0.253 1.253 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.142 0.858 43 H 0.116 0.884 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.191 14.328 9.731 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.113 4.113 4 H 0.153 0.847 5 C -0.195 4.195 6 C 0.280 3.720 7 O -0.426 6.426 8 N -0.343 5.343 9 C 0.026 3.974 10 C -0.108 4.108 11 C -0.122 4.122 12 C -0.137 4.137 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.082 4.082 16 C -0.116 4.116 17 C 0.066 3.934 18 H 0.141 0.859 19 C 0.268 3.732 20 O -0.473 6.473 21 O -0.147 6.147 22 C -0.476 4.476 23 H 0.083 0.917 24 C -0.205 4.205 25 N -0.545 5.545 26 Si 0.831 3.169 27 H -0.197 1.197 28 H -0.186 1.186 29 H -0.177 1.177 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.126 0.874 40 H 0.180 0.820 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.134 0.866 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.775 13.606 9.444 23.574 hybrid contribution 1.344 -1.193 -0.618 1.901 sum -15.431 12.413 8.826 21.682 Atomic orbital electron populations 1.21778 0.91810 1.02664 1.03488 1.21370 0.98259 0.93966 1.01177 1.21434 0.87249 0.99880 1.02706 0.84738 1.21797 1.03591 1.00289 0.93834 1.21995 0.92710 0.80911 0.76344 1.90919 1.67320 1.35847 1.48555 1.48225 1.03957 1.23812 1.58271 1.21035 0.96651 0.80961 0.98740 1.19896 0.94464 0.96096 1.00388 1.21320 1.00530 0.90693 0.99616 1.21466 0.95752 0.98491 0.97966 1.21373 0.95566 0.98301 0.98457 1.21301 1.00849 0.92189 1.00846 1.19407 0.95463 0.93688 0.99651 1.20659 1.00095 0.91460 0.99339 1.20764 0.82352 0.90213 1.00105 0.85900 1.23355 0.78054 0.90325 0.81434 1.90491 1.59399 1.33268 1.64117 1.83828 1.63052 1.37154 1.30710 1.21202 1.36770 0.86649 1.02957 0.91745 1.26392 0.96598 1.02980 0.94568 1.70075 1.42784 1.28593 1.13051 0.84667 0.78689 0.75389 0.78155 1.19667 1.18556 1.17688 0.92307 0.91093 0.90285 0.93348 0.94387 0.91035 0.95598 0.87466 0.84876 0.87371 0.82020 0.82672 0.83979 0.86587 0.92435 0.89719 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.68 71.98 0.70 -1.66 16 2 C -0.11 -2.98 4.89 30.59 0.15 -2.83 16 3 C -0.09 -2.36 1.95 -11.54 -0.02 -2.38 16 4 H 0.13 2.16 6.24 -2.39 -0.01 2.14 16 5 C -0.14 -3.20 9.06 71.98 0.65 -2.55 16 6 C 0.49 19.34 6.70 87.66 0.59 19.93 16 7 O -0.55 -30.06 12.04 22.78 0.27 -29.79 16 8 N -0.61 -20.81 2.93 -803.36 -2.35 -23.16 16 9 C 0.15 2.98 5.97 85.63 0.51 3.49 16 10 C -0.11 -2.35 5.82 -19.82 -0.12 -2.47 16 11 C -0.10 -1.51 9.62 22.35 0.22 -1.30 16 12 C -0.12 -1.70 10.05 22.21 0.22 -1.48 16 13 C -0.12 -2.20 10.04 22.20 0.22 -1.97 16 14 C -0.13 -3.38 9.59 22.37 0.21 -3.16 16 15 C -0.08 -2.35 5.76 -19.85 -0.11 -2.46 16 16 C -0.08 -2.97 4.83 29.91 0.14 -2.82 16 17 C 0.17 7.06 3.35 44.20 0.15 7.21 16 18 H 0.12 4.48 8.14 -2.38 -0.02 4.46 16 19 C 0.42 24.14 4.80 71.24 0.34 24.48 16 20 O -0.58 -36.78 14.49 28.50 0.41 -36.37 16 21 O -0.24 -15.54 8.38 17.35 0.15 -15.40 16 22 C -0.40 -27.04 9.65 67.94 0.66 -26.38 16 23 H 0.06 4.59 6.86 -2.91 -0.02 4.57 16 24 C -0.01 -0.42 5.49 84.87 0.47 0.05 16 25 N -0.91 -57.37 13.67 21.62 0.30 -57.07 16 26 Si 1.01 48.27 29.55 68.60 2.03 50.30 16 27 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.02 6.41 -2.39 -0.02 1.00 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.29 8.02 -2.39 -0.02 1.27 16 35 H 0.07 1.48 7.99 -2.39 -0.02 1.46 16 36 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 37 H 0.11 1.69 6.24 -2.39 -0.01 1.67 16 38 H 0.13 1.77 5.54 -2.39 -0.01 1.76 16 39 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.16 1.10 8.05 -2.91 -0.02 1.07 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 43 H 0.12 2.98 8.05 -2.91 -0.02 2.95 16 44 H 0.06 2.71 7.46 -2.39 -0.02 2.69 16 45 H 0.08 3.21 8.11 -2.39 -0.02 3.19 16 46 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -96.06 371.86 6.77 -89.29 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.99 Total: 18.50 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.98 Total: 3.69 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.06 Total: -80.23 kcal Atomic # 8 Polarization: -82.38 SS G_CDS: 0.83 Total: -81.55 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -96.06 6.77 -89.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733532475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.298 kcal (2) G-P(sol) polarization free energy of solvation -96.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds