Wall clock time and date at job start Tue Mar 31 2020 15:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 H 1.08999 * 109.46945 * 55.00109 * 3 2 1 5 5 C 1.52994 * 109.47062 * 294.99825 * 3 2 1 6 6 C 1.50698 * 109.46625 * 174.99796 * 3 2 1 7 7 O 1.21274 * 120.00583 * 359.97438 * 6 3 2 8 8 N 1.34781 * 119.99546 * 179.97438 * 6 3 2 9 9 C 1.46679 * 121.34467 * 5.76326 * 8 6 3 10 10 C 1.50812 * 109.68660 * 135.74691 * 9 8 6 11 11 C 1.38839 * 117.81058 * 190.99087 * 10 9 8 12 12 C 1.37958 * 120.50895 * 180.36693 * 11 10 9 13 13 C 1.38254 * 119.72034 * 0.07055 * 12 11 10 14 14 C 1.37906 * 119.82544 * 359.80400 * 13 12 11 15 15 C 1.37672 * 122.34889 * 11.06617 * 10 9 8 16 16 C 1.50602 * 122.86960 * 359.16259 * 15 10 9 17 17 C 1.47237 * 121.34122 * 185.78167 * 8 6 3 18 18 H 1.09000 * 109.78355 * 124.65756 * 17 8 6 19 19 C 1.50699 * 109.78083 * 3.90113 * 17 8 6 20 20 O 1.21212 * 120.00327 * 105.77923 * 19 17 8 21 21 O 1.34312 * 119.99881 * 285.78005 * 19 17 8 22 22 C 1.34922 * 117.00123 * 180.02562 * 21 19 17 23 23 H 1.08001 * 120.00058 * 359.97438 * 22 21 19 24 24 C 1.38748 * 120.00285 * 180.02562 * 22 21 19 25 25 N 1.31449 * 120.00106 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00239 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47250 * 270.00067 * 26 24 22 28 28 H 1.48503 * 109.47124 * 150.00050 * 26 24 22 29 29 H 1.48501 * 109.47055 * 29.99880 * 26 24 22 30 30 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47380 * 300.00003 * 1 2 3 32 32 H 1.08998 * 109.46598 * 60.00264 * 1 2 3 33 33 H 1.09002 * 109.46948 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47095 * 119.99878 * 2 1 3 35 35 H 1.09000 * 109.46952 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47472 * 299.99962 * 5 3 2 37 37 H 1.09001 * 109.47452 * 60.00317 * 5 3 2 38 38 H 1.08996 * 109.43899 * 255.81265 * 9 8 6 39 39 H 1.09007 * 109.43738 * 15.72552 * 9 8 6 40 40 H 1.08002 * 119.74270 * 0.37746 * 11 10 9 41 41 H 1.08003 * 120.13622 * 180.02562 * 12 11 10 42 42 H 1.08002 * 120.09124 * 179.82706 * 13 12 11 43 43 H 1.08003 * 119.71218 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.19913 * 259.47433 * 16 15 10 45 45 H 1.09004 * 109.20521 * 140.17952 * 16 15 10 46 46 H 0.97003 * 119.99384 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1450 0.3953 0.2047 8 7 4.2149 2.6119 0.1448 9 6 3.5106 3.8981 0.1749 10 6 4.1635 4.8115 1.1818 11 6 3.4999 5.9834 1.5193 12 6 4.0502 6.8629 2.4286 13 6 5.2725 6.5752 3.0070 14 6 5.9314 5.4103 2.6746 15 6 5.3772 4.5200 1.7625 16 6 6.1472 3.2617 1.4592 17 6 5.6868 2.6476 0.1381 18 1 6.0372 3.2571 -0.6948 19 6 6.2303 1.2479 0.0096 20 8 6.7084 0.8774 -1.0409 21 8 6.1851 0.4109 1.0590 22 6 6.6889 -0.8274 0.8772 23 1 7.1036 -1.1064 -0.0802 24 6 6.6734 -1.7428 1.9197 25 7 6.1683 -1.4034 3.0849 26 14 7.3704 -3.4574 1.6677 27 1 6.2961 -4.3626 1.1864 28 1 7.9077 -3.9674 2.9548 29 1 8.4615 -3.4053 0.6617 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5876 -2.1491 37 1 0.5489 2.1253 -1.3969 38 1 3.5525 4.3578 -0.8125 39 1 2.4698 3.7353 0.4552 40 1 2.5455 6.2081 1.0665 41 1 3.5285 7.7726 2.6871 42 1 5.7101 7.2608 3.7175 43 1 6.8864 5.1876 3.1272 44 1 5.9897 2.5426 2.2631 45 1 7.2093 3.4982 1.3938 46 1 5.8067 -0.5129 3.2158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733532477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:00 Heat of formation + Delta-G solvation = -87.644174 kcal Electronic energy + Delta-G solvation = -30073.544443 eV Core-core repulsion = 26121.453472 eV Total energy + Delta-G solvation = -3952.090970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83045 -39.19231 -38.45344 -36.07081 -35.28100 -34.91916 -33.08428 -31.79974 -31.40984 -30.20871 -29.06482 -26.16070 -25.10027 -24.86802 -23.94075 -22.41916 -21.74895 -20.58738 -20.10973 -18.64395 -17.65549 -16.94127 -16.89538 -15.92165 -15.79755 -15.33454 -15.02550 -14.89205 -14.76066 -14.49395 -14.32577 -13.83154 -13.67594 -13.45166 -13.41015 -13.15952 -12.96398 -12.66118 -12.39071 -12.33171 -12.17876 -11.96808 -11.64796 -11.51361 -11.37983 -11.12339 -10.99718 -10.91936 -10.71511 -10.61561 -10.54251 -10.16619 -10.13846 -9.49800 -9.13504 -8.91392 -8.83468 -8.61728 -8.42697 -8.23504 -6.49643 -3.77709 1.25446 1.30464 2.81552 3.03829 3.40412 3.44369 3.61569 3.65214 3.91555 4.11194 4.49008 4.55483 4.71002 4.79370 4.83938 4.84528 4.95487 4.98914 5.10693 5.14371 5.27619 5.30917 5.35191 5.40507 5.45630 5.50992 5.52874 5.57836 5.60553 5.69730 5.78350 5.90920 5.91934 5.92502 6.01188 6.15602 6.26030 6.33052 6.36638 6.42501 6.51611 6.56266 6.61021 6.84321 6.93927 7.62550 7.89009 8.58435 8.70040 8.76540 9.33211 10.04700 10.95851 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.005143 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.923812 B = 5443.440506 C = 7216.740109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.103 4.103 4 H 0.092 0.908 5 C -0.151 4.151 6 C 0.499 3.501 7 O -0.459 6.459 8 N -0.613 5.613 9 C 0.154 3.846 10 C -0.101 4.101 11 C -0.113 4.113 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.118 4.118 15 C -0.054 4.054 16 C -0.097 4.097 17 C 0.167 3.833 18 H 0.102 0.898 19 C 0.420 3.580 20 O -0.562 6.562 21 O -0.210 6.210 22 C -0.429 4.429 23 H 0.079 0.921 24 C 0.009 3.991 25 N -0.890 5.890 26 Si 1.098 2.902 27 H -0.284 1.284 28 H -0.279 1.279 29 H -0.284 1.284 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 16.284 -2.425 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.124 4.124 4 H 0.110 0.890 5 C -0.208 4.208 6 C 0.286 3.714 7 O -0.329 6.329 8 N -0.351 5.351 9 C 0.031 3.969 10 C -0.102 4.102 11 C -0.131 4.131 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.136 4.136 15 C -0.055 4.055 16 C -0.135 4.135 17 C 0.063 3.937 18 H 0.120 0.880 19 C 0.267 3.733 20 O -0.460 6.460 21 O -0.116 6.116 22 C -0.506 4.506 23 H 0.096 0.904 24 C -0.195 4.195 25 N -0.525 5.525 26 Si 0.923 3.077 27 H -0.210 1.210 28 H -0.205 1.205 29 H -0.210 1.210 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.834 14.037 -1.855 17.239 hybrid contribution -0.318 1.808 -0.777 1.993 sum -10.152 15.845 -2.632 19.002 Atomic orbital electron populations 1.21819 0.95715 1.01758 1.01393 1.21355 0.94937 0.94103 1.04159 1.21281 0.91745 0.99484 0.99935 0.88997 1.21988 1.01959 1.00573 0.96326 1.20885 0.90132 0.83424 0.76970 1.91037 1.67522 1.29650 1.44645 1.48073 1.05084 1.05847 1.76144 1.20580 0.96152 0.82672 0.97449 1.19838 0.95186 0.96134 0.99009 1.20957 0.99823 0.93847 0.98513 1.21005 0.96145 0.99546 0.97749 1.21062 0.95489 0.97125 0.99917 1.21224 1.00389 0.94191 0.97774 1.19557 0.94159 0.95595 0.96153 1.20923 0.99531 0.94658 0.98363 1.20911 0.80436 0.93902 0.98455 0.88024 1.21885 0.80735 0.86815 0.83879 1.90553 1.48147 1.77352 1.29960 1.83543 1.67477 1.23008 1.37607 1.21928 1.40285 0.86660 1.01685 0.90365 1.26382 0.97372 1.04064 0.91662 1.70509 1.35532 1.23145 1.23316 0.83076 0.76157 0.72668 0.75786 1.21034 1.20451 1.21004 0.92535 0.92905 0.92719 0.91225 0.90638 0.91883 0.91974 0.91331 0.90223 0.88395 0.85959 0.86094 0.86108 0.85859 0.88085 0.89306 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 37.16 0.36 -1.29 16 2 C -0.11 -1.61 4.75 -26.73 -0.13 -1.73 16 3 C -0.10 -1.44 1.91 -91.77 -0.18 -1.61 16 4 H 0.09 1.11 7.36 -51.93 -0.38 0.72 16 5 C -0.15 -1.63 8.59 37.15 0.32 -1.31 16 6 C 0.50 9.63 6.98 -10.98 -0.08 9.56 16 7 O -0.46 -11.74 11.15 -21.78 -0.24 -11.98 16 8 N -0.61 -10.43 2.93 -168.14 -0.49 -10.93 16 9 C 0.15 1.84 4.47 -5.04 -0.02 1.82 16 10 C -0.10 -1.25 5.82 -104.55 -0.61 -1.86 16 11 C -0.11 -1.13 9.62 -39.46 -0.38 -1.51 16 12 C -0.13 -1.22 10.05 -39.68 -0.40 -1.62 16 13 C -0.12 -1.23 10.04 -39.70 -0.40 -1.63 16 14 C -0.12 -1.46 9.59 -39.43 -0.38 -1.83 16 15 C -0.05 -0.77 5.76 -104.60 -0.60 -1.37 16 16 C -0.10 -1.66 5.16 -28.04 -0.14 -1.80 16 17 C 0.17 3.25 3.32 -68.79 -0.23 3.02 16 18 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 19 C 0.42 11.07 4.62 36.01 0.17 11.24 16 20 O -0.56 -16.63 16.33 -21.72 -0.35 -16.99 16 21 O -0.21 -6.19 6.35 -28.89 -0.18 -6.38 16 22 C -0.43 -13.53 9.28 30.92 0.29 -13.24 16 23 H 0.08 2.58 6.86 -52.49 -0.36 2.22 16 24 C 0.01 0.27 5.49 -17.53 -0.10 0.17 16 25 N -0.89 -27.86 13.69 55.48 0.76 -27.10 16 26 Si 1.10 26.51 29.92 -169.99 -5.09 21.42 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 35 H 0.06 0.58 5.18 -51.93 -0.27 0.31 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.58 6.57 -51.93 -0.34 0.24 16 38 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 39 H 0.10 0.96 5.53 -51.93 -0.29 0.67 16 40 H 0.12 0.89 8.05 -52.49 -0.42 0.47 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.39 8.05 -52.48 -0.42 0.97 16 44 H 0.10 2.03 7.45 -51.93 -0.39 1.64 16 45 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 46 H 0.28 8.83 7.97 -40.82 -0.33 8.51 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -38.85 366.96 -9.10 -47.95 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.53 Total: 3.49 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.51 Total: -5.02 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.27 Total: -38.03 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.78 Total: -35.35 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.09 Total: 21.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.85 -9.10 -47.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733532477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.696 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds