Wall clock time and date at job start Tue Mar 31 2020 15:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 H 1.08999 * 109.46945 * 55.00109 * 3 2 1 5 5 C 1.52994 * 109.47062 * 294.99825 * 3 2 1 6 6 C 1.50698 * 109.46625 * 174.99796 * 3 2 1 7 7 O 1.21274 * 120.00583 * 359.97438 * 6 3 2 8 8 N 1.34781 * 119.99546 * 179.97438 * 6 3 2 9 9 C 1.46679 * 121.34467 * 5.76326 * 8 6 3 10 10 C 1.50812 * 109.68660 * 135.74691 * 9 8 6 11 11 C 1.38839 * 117.81058 * 190.99087 * 10 9 8 12 12 C 1.37958 * 120.50895 * 180.36693 * 11 10 9 13 13 C 1.38254 * 119.72034 * 0.07055 * 12 11 10 14 14 C 1.37906 * 119.82544 * 359.80400 * 13 12 11 15 15 C 1.37672 * 122.34889 * 11.06617 * 10 9 8 16 16 C 1.50602 * 122.86960 * 359.16259 * 15 10 9 17 17 C 1.47237 * 121.34122 * 185.78167 * 8 6 3 18 18 H 1.09000 * 109.78355 * 124.65756 * 17 8 6 19 19 C 1.50699 * 109.78083 * 3.90113 * 17 8 6 20 20 O 1.21212 * 120.00327 * 105.77923 * 19 17 8 21 21 O 1.34312 * 119.99881 * 285.78005 * 19 17 8 22 22 C 1.34922 * 117.00123 * 180.02562 * 21 19 17 23 23 H 1.08001 * 120.00058 * 359.97438 * 22 21 19 24 24 C 1.38748 * 120.00285 * 180.02562 * 22 21 19 25 25 N 1.31449 * 120.00106 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00239 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47250 * 270.00067 * 26 24 22 28 28 H 1.48503 * 109.47124 * 150.00050 * 26 24 22 29 29 H 1.48501 * 109.47055 * 29.99880 * 26 24 22 30 30 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47380 * 300.00003 * 1 2 3 32 32 H 1.08998 * 109.46598 * 60.00264 * 1 2 3 33 33 H 1.09002 * 109.46948 * 240.00069 * 2 1 3 34 34 H 1.09000 * 109.47095 * 119.99878 * 2 1 3 35 35 H 1.09000 * 109.46952 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47472 * 299.99962 * 5 3 2 37 37 H 1.09001 * 109.47452 * 60.00317 * 5 3 2 38 38 H 1.08996 * 109.43899 * 255.81265 * 9 8 6 39 39 H 1.09007 * 109.43738 * 15.72552 * 9 8 6 40 40 H 1.08002 * 119.74270 * 0.37746 * 11 10 9 41 41 H 1.08003 * 120.13622 * 180.02562 * 12 11 10 42 42 H 1.08002 * 120.09124 * 179.82706 * 13 12 11 43 43 H 1.08003 * 119.71218 * 179.97438 * 14 13 12 44 44 H 1.09005 * 109.19913 * 259.47433 * 16 15 10 45 45 H 1.09004 * 109.20521 * 140.17952 * 16 15 10 46 46 H 0.97003 * 119.99384 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1450 0.3953 0.2047 8 7 4.2149 2.6119 0.1448 9 6 3.5106 3.8981 0.1749 10 6 4.1635 4.8115 1.1818 11 6 3.4999 5.9834 1.5193 12 6 4.0502 6.8629 2.4286 13 6 5.2725 6.5752 3.0070 14 6 5.9314 5.4103 2.6746 15 6 5.3772 4.5200 1.7625 16 6 6.1472 3.2617 1.4592 17 6 5.6868 2.6476 0.1381 18 1 6.0372 3.2571 -0.6948 19 6 6.2303 1.2479 0.0096 20 8 6.7084 0.8774 -1.0409 21 8 6.1851 0.4109 1.0590 22 6 6.6889 -0.8274 0.8772 23 1 7.1036 -1.1064 -0.0802 24 6 6.6734 -1.7428 1.9197 25 7 6.1683 -1.4034 3.0849 26 14 7.3704 -3.4574 1.6677 27 1 6.2961 -4.3626 1.1864 28 1 7.9077 -3.9674 2.9548 29 1 8.4615 -3.4053 0.6617 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5876 -2.1491 37 1 0.5489 2.1253 -1.3969 38 1 3.5525 4.3578 -0.8125 39 1 2.4698 3.7353 0.4552 40 1 2.5455 6.2081 1.0665 41 1 3.5285 7.7726 2.6871 42 1 5.7101 7.2608 3.7175 43 1 6.8864 5.1876 3.1272 44 1 5.9897 2.5426 2.2631 45 1 7.2093 3.4982 1.3938 46 1 5.8067 -0.5129 3.2158 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733532477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:59 Heat of formation + Delta-G solvation = -112.299315 kcal Electronic energy + Delta-G solvation = -30074.613570 eV Core-core repulsion = 26121.453472 eV Total energy + Delta-G solvation = -3953.160097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27919 -40.58340 -40.20463 -37.56513 -37.02859 -36.58361 -34.37155 -34.02286 -32.45452 -31.31031 -30.13234 -27.34638 -26.99581 -26.01379 -25.52869 -23.58827 -22.88049 -22.21923 -21.34095 -20.25728 -19.77145 -18.50598 -18.10935 -17.65078 -17.12351 -16.77112 -16.62405 -16.27036 -16.05372 -15.78731 -15.63265 -15.54556 -15.34299 -14.75199 -14.61414 -14.35854 -14.02927 -13.93423 -13.78682 -13.56642 -13.32425 -13.06664 -13.00881 -12.88737 -12.65014 -12.58024 -12.44411 -12.28513 -12.14396 -11.97985 -11.92585 -11.82277 -11.76648 -11.66229 -11.02821 -10.76271 -10.50449 -9.97876 -9.63121 -9.53096 -8.97527 -6.26372 0.38539 0.45188 1.15867 1.40173 1.55484 1.58471 1.72485 2.05725 2.20263 2.59449 2.80071 3.07836 3.45215 3.52349 3.57543 3.70404 3.76799 3.81537 3.92137 3.99919 4.19797 4.27490 4.31595 4.39708 4.45538 4.46897 4.53346 4.59455 4.67708 4.68810 4.73428 4.82771 4.89585 4.97931 5.06061 5.09386 5.11538 5.16841 5.18109 5.32534 5.34708 5.45394 5.54127 5.60712 5.63258 6.08707 6.20459 6.29046 6.50030 6.96880 7.13604 7.73337 8.49416 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010048 B = 0.005143 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.923812 B = 5443.440506 C = 7216.740109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.124 0.876 5 C -0.144 4.144 6 C 0.483 3.517 7 O -0.537 6.537 8 N -0.608 5.608 9 C 0.147 3.853 10 C -0.110 4.110 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.133 4.133 15 C -0.084 4.084 16 C -0.083 4.083 17 C 0.172 3.828 18 H 0.123 0.877 19 C 0.422 3.578 20 O -0.603 6.603 21 O -0.228 6.228 22 C -0.457 4.457 23 H 0.052 0.948 24 C -0.032 4.032 25 N -0.903 5.903 26 Si 1.143 2.857 27 H -0.269 1.269 28 H -0.258 1.258 29 H -0.271 1.271 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 19.894 -2.612 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.113 4.113 4 H 0.141 0.859 5 C -0.201 4.201 6 C 0.273 3.727 7 O -0.413 6.413 8 N -0.345 5.345 9 C 0.027 3.973 10 C -0.111 4.111 11 C -0.123 4.123 12 C -0.136 4.136 13 C -0.137 4.137 14 C -0.151 4.151 15 C -0.084 4.084 16 C -0.121 4.121 17 C 0.067 3.933 18 H 0.141 0.859 19 C 0.271 3.729 20 O -0.503 6.503 21 O -0.135 6.135 22 C -0.534 4.534 23 H 0.069 0.931 24 C -0.230 4.230 25 N -0.538 5.538 26 Si 0.959 3.041 27 H -0.194 1.194 28 H -0.182 1.182 29 H -0.196 1.196 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.180 0.820 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.138 0.862 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.052 17.743 -2.038 22.121 hybrid contribution 0.643 0.879 -0.767 1.332 sum -12.409 18.622 -2.805 22.553 Atomic orbital electron populations 1.21762 0.91836 1.02504 1.03464 1.21322 0.98121 0.94456 1.00708 1.21360 0.87242 0.99452 1.03210 0.85874 1.22018 1.04146 1.00953 0.92992 1.22092 0.92552 0.82796 0.75258 1.91002 1.69232 1.32531 1.48521 1.48229 1.03779 1.07682 1.74823 1.21104 0.96958 0.79883 0.99355 1.19967 0.94570 0.97378 0.99159 1.21333 1.00793 0.92235 0.97908 1.21486 0.95422 1.00372 0.96343 1.21386 0.95924 0.96355 1.00044 1.21305 1.00844 0.95052 0.97877 1.19345 0.95569 0.94671 0.98828 1.20677 1.00531 0.95565 0.95369 1.20836 0.82655 0.89190 1.00615 0.85949 1.23268 0.78469 0.88754 0.82395 1.90499 1.49672 1.78976 1.31171 1.83588 1.68254 1.22749 1.38867 1.21964 1.41728 0.88534 1.01153 0.93057 1.28196 0.96466 1.07666 0.90644 1.70638 1.36985 1.22160 1.24018 0.82620 0.76373 0.67999 0.77070 1.19448 1.18173 1.19627 0.92668 0.91196 0.90040 0.93975 0.95087 0.89410 0.94146 0.87735 0.87051 0.85168 0.82039 0.82632 0.83808 0.86200 0.92465 0.89172 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.67 71.98 0.70 -2.05 16 2 C -0.11 -3.31 4.75 30.60 0.15 -3.16 16 3 C -0.09 -2.44 1.91 -11.54 -0.02 -2.47 16 4 H 0.12 2.53 7.36 -2.39 -0.02 2.52 16 5 C -0.14 -2.59 8.59 71.98 0.62 -1.97 16 6 C 0.48 19.32 6.98 87.66 0.61 19.93 16 7 O -0.54 -29.82 11.15 23.13 0.26 -29.57 16 8 N -0.61 -20.68 2.93 -804.27 -2.35 -23.03 16 9 C 0.15 2.98 4.47 85.63 0.38 3.36 16 10 C -0.11 -2.38 5.82 -19.82 -0.12 -2.50 16 11 C -0.10 -1.52 9.62 22.35 0.22 -1.31 16 12 C -0.12 -1.66 10.05 22.21 0.22 -1.44 16 13 C -0.12 -2.10 10.04 22.19 0.22 -1.87 16 14 C -0.13 -3.16 9.59 22.37 0.21 -2.95 16 15 C -0.08 -2.33 5.76 -19.85 -0.11 -2.44 16 16 C -0.08 -3.04 5.16 29.75 0.15 -2.89 16 17 C 0.17 6.98 3.32 44.04 0.15 7.13 16 18 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 19 C 0.42 24.00 4.62 71.24 0.33 24.33 16 20 O -0.60 -38.37 16.33 23.31 0.38 -37.99 16 21 O -0.23 -14.62 6.35 22.66 0.14 -14.48 16 22 C -0.46 -31.13 9.28 67.94 0.63 -30.50 16 23 H 0.05 3.68 6.86 -2.91 -0.02 3.66 16 24 C -0.03 -2.07 5.49 84.87 0.47 -1.60 16 25 N -0.90 -59.64 13.69 21.62 0.30 -59.34 16 26 Si 1.14 55.17 29.92 68.60 2.05 57.22 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.20 6.56 -2.39 -0.02 1.18 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.03 1.19 7.95 -2.39 -0.02 1.17 16 35 H 0.09 1.15 5.18 -2.39 -0.01 1.13 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 1.19 6.57 -2.39 -0.02 1.17 16 38 H 0.11 1.64 7.69 -2.39 -0.02 1.62 16 39 H 0.13 1.82 5.53 -2.38 -0.01 1.80 16 40 H 0.16 1.11 8.05 -2.91 -0.02 1.09 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.12 2.78 8.05 -2.91 -0.02 2.76 16 44 H 0.06 2.55 7.45 -2.38 -0.02 2.53 16 45 H 0.09 3.09 8.11 -2.38 -0.02 3.07 16 46 H 0.26 17.76 7.97 -92.71 -0.74 17.02 16 Total: -1.00 -97.59 366.96 6.60 -90.98 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 1.02 Total: 18.61 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 4.80 Total: -2.40 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.06 Total: -82.37 kcal Atomic # 8 Polarization: -82.82 SS G_CDS: 0.78 Total: -82.03 kcal Atomic # 14 Polarization: 55.17 SS G_CDS: 2.05 Total: 57.22 kcal Total: -97.59 6.60 -90.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733532477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.316 kcal (2) G-P(sol) polarization free energy of solvation -97.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds