Wall clock time and date at job start Tue Mar 31 2020 16:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 N 1.46501 * 109.46830 * 119.99621 * 2 1 3 5 5 C 1.45753 * 117.94699 * 120.00474 * 4 2 1 6 6 C 1.52914 * 110.48778 * 160.92721 * 5 4 2 7 7 C 1.53345 * 108.67898 * 50.74900 * 6 5 4 8 8 C 1.53071 * 108.42166 * 292.46946 * 7 6 5 9 9 H 1.09001 * 109.40306 * 288.85106 * 8 7 6 10 10 O 1.45208 * 109.39791 * 169.02982 * 8 7 6 11 11 C 1.34804 * 116.99842 * 150.00137 * 10 8 7 12 12 O 1.21522 * 120.00148 * 359.97438 * 11 10 8 13 13 C 1.47291 * 119.99478 * 179.97438 * 11 10 8 14 14 C 1.39285 * 120.29020 * 5.51276 * 13 11 10 15 15 C 1.38206 * 120.08430 * 179.72320 * 14 13 11 16 16 C 1.38829 * 120.68285 * 0.26242 * 15 14 13 17 17 C 1.37604 * 120.58484 * 359.97054 * 16 15 14 18 18 C 1.40700 * 119.88296 * 0.02825 * 17 16 15 19 19 C 1.40866 * 120.32767 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99597 * 213.31665 * 19 18 17 21 21 C 1.40295 * 120.00155 * 33.31800 * 19 18 17 22 22 N 1.30612 * 120.00228 * 8.75540 * 21 19 18 23 23 Si 1.86807 * 119.99929 * 188.75705 * 21 19 18 24 24 H 1.48508 * 109.46914 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47186 * 119.99776 * 23 21 19 26 26 H 1.48497 * 109.47111 * 240.00048 * 23 21 19 27 27 C 1.33356 * 117.94676 * 299.99904 * 4 2 1 28 28 O 1.21277 * 118.24772 * 2.22883 * 27 4 2 29 29 H 1.09001 * 109.47358 * 300.00480 * 1 2 3 30 30 H 1.09005 * 109.47440 * 60.00310 * 1 2 3 31 31 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47487 * 239.99759 * 2 1 3 33 33 H 1.09001 * 109.47456 * 59.99580 * 3 2 1 34 34 H 1.08999 * 109.46966 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46461 * 299.99549 * 3 2 1 36 36 H 1.08998 * 109.29860 * 40.60848 * 5 4 2 37 37 H 1.09007 * 109.29693 * 281.23460 * 5 4 2 38 38 H 1.09000 * 109.60010 * 290.98945 * 6 5 4 39 39 H 1.09002 * 109.60285 * 170.51074 * 6 5 4 40 40 H 1.09001 * 109.67283 * 172.73923 * 7 6 5 41 41 H 1.08997 * 109.67298 * 52.20495 * 7 6 5 42 42 H 1.07999 * 119.95631 * 0.02562 * 14 13 11 43 43 H 1.08000 * 119.65348 * 180.27732 * 15 14 13 44 44 H 1.08003 * 119.71067 * 179.97438 * 16 15 14 45 45 H 1.07999 * 120.05488 * 180.02562 * 17 16 15 46 46 H 0.96996 * 120.00503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8530 -1.8709 1.0107 6 6 3.6411 -2.1748 2.2854 7 6 2.6682 -2.1981 3.4705 8 6 2.1400 -0.7784 3.6907 9 1 2.9363 -0.1547 4.0969 10 8 1.0314 -0.8163 4.6278 11 6 0.8468 0.2721 5.4015 12 8 1.5920 1.2261 5.2961 13 6 -0.2584 0.3047 6.3747 14 6 -1.0451 -0.8257 6.5825 15 6 -2.0774 -0.7921 7.5009 16 6 -2.3471 0.3635 8.2215 17 6 -1.5906 1.4977 8.0348 18 6 -0.5338 1.4904 7.1060 19 6 0.2471 2.6459 6.9079 20 1 0.6503 2.8640 5.9300 21 6 0.5009 3.5135 7.9808 22 7 0.1623 3.1683 9.1941 23 14 1.3231 5.1626 7.6741 24 1 1.6048 5.3131 6.2237 25 1 0.4220 6.2556 8.1198 26 1 2.5967 5.2298 8.4347 27 6 1.6712 -0.1997 2.3866 28 8 0.9378 0.7657 2.4178 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.5486 -1.6948 0.1903 37 1 2.2206 -2.7244 0.7660 38 1 4.3923 -1.4011 2.4440 39 1 4.1272 -3.1460 2.1920 40 1 3.1885 -2.5390 4.3656 41 1 1.8377 -2.8687 3.2503 42 1 -0.8451 -1.7311 6.0288 43 1 -2.6802 -1.6740 7.6597 44 1 -3.1580 0.3725 8.9349 45 1 -1.8077 2.3918 8.6003 46 1 0.3375 3.7682 9.9358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748171853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:59 Heat of formation + Delta-G solvation = -98.692141 kcal Electronic energy + Delta-G solvation = -29407.077605 eV Core-core repulsion = 25454.507559 eV Total energy + Delta-G solvation = -3952.570046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.87415 -39.11621 -37.26843 -36.45725 -35.67167 -34.48604 -33.67804 -31.02741 -30.10414 -29.65975 -28.95627 -27.12492 -25.59029 -24.42542 -23.43992 -22.38711 -21.12659 -20.99455 -19.68248 -18.55576 -17.43818 -17.14862 -16.67595 -16.19651 -15.73975 -15.30004 -15.11875 -14.76332 -14.29155 -14.11297 -13.94030 -13.82902 -13.61467 -13.30163 -13.11572 -12.93641 -12.68761 -12.49377 -12.17948 -11.96175 -11.72774 -11.66965 -11.58270 -11.44699 -11.22211 -11.16854 -11.12540 -10.86638 -10.80809 -10.64244 -10.56505 -10.38121 -10.09847 -9.67520 -9.31379 -8.99525 -8.72629 -8.67628 -7.60349 -7.39025 -6.83829 -4.43902 2.26263 2.64351 2.81822 2.92413 3.09640 3.20404 3.23012 3.64315 3.96144 3.98937 4.47371 4.52685 4.64848 4.66492 4.70085 4.97548 5.09344 5.16809 5.18539 5.26273 5.36571 5.55155 5.57005 5.61307 5.68446 5.71019 5.80341 5.86072 5.92690 5.96075 6.15729 6.20218 6.29183 6.38491 6.42288 6.61183 6.67644 6.97056 7.10025 7.18355 7.34714 7.49401 7.51298 7.66157 7.94291 7.99443 8.18531 8.34976 8.63112 8.77262 8.84316 9.15466 10.10290 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.004017 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.650233 B = 6969.432465 C = 7903.675195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.142 3.858 3 C -0.172 4.172 4 N -0.605 5.605 5 C 0.113 3.887 6 C -0.132 4.132 7 C -0.118 4.118 8 C 0.080 3.920 9 H 0.109 0.891 10 O -0.347 6.347 11 C 0.510 3.490 12 O -0.502 6.502 13 C -0.246 4.246 14 C -0.038 4.038 15 C -0.248 4.248 16 C -0.091 4.091 17 C -0.149 4.149 18 C 0.147 3.853 19 C -0.414 4.414 20 H 0.107 0.893 21 C 0.070 3.930 22 N -0.788 5.788 23 Si 0.917 3.083 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.504 3.496 28 O -0.511 6.511 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -9.340 -13.852 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.039 3.961 3 C -0.229 4.229 4 N -0.341 5.341 5 C -0.010 4.010 6 C -0.170 4.170 7 C -0.156 4.156 8 C 0.020 3.980 9 H 0.127 0.873 10 O -0.266 6.266 11 C 0.359 3.641 12 O -0.391 6.391 13 C -0.248 4.248 14 C -0.057 4.057 15 C -0.267 4.267 16 C -0.110 4.110 17 C -0.168 4.168 18 C 0.144 3.856 19 C -0.442 4.442 20 H 0.125 0.875 21 C -0.149 4.149 22 N -0.413 5.413 23 Si 0.741 3.259 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.198 1.198 27 C 0.291 3.709 28 O -0.386 6.386 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.817 -8.451 -13.599 17.035 hybrid contribution 0.547 0.580 -0.070 0.800 sum 6.363 -7.871 -13.669 17.008 Atomic orbital electron populations 1.22251 0.94689 1.02045 1.04017 1.21023 0.95067 0.93456 0.86519 1.22223 1.00542 0.96223 1.03956 1.47511 1.51681 1.29063 1.05875 1.21425 0.93472 0.87676 0.98385 1.21864 0.98084 1.03524 0.93537 1.21728 0.99546 0.95003 0.99341 1.22211 0.90618 0.98175 0.86967 0.87314 1.86734 1.48316 1.43982 1.47546 1.21376 0.84701 0.79144 0.78844 1.90721 1.46203 1.34866 1.67307 1.18731 1.01467 0.96416 1.08234 1.20810 0.93627 0.95918 0.95317 1.20336 1.03471 0.98334 1.04606 1.20849 0.98364 0.93844 0.97941 1.21333 0.95785 0.97962 1.01671 1.17453 0.89888 0.90193 0.88107 1.20309 1.23977 1.02357 0.97571 0.87487 1.26147 0.94521 0.99772 0.94456 1.69712 1.35522 1.36053 0.99967 0.86102 0.79066 0.80315 0.80460 1.17903 1.19705 1.19794 1.20447 0.81185 0.84195 0.85099 1.90691 1.34802 1.26214 1.86869 0.89426 0.92164 0.93063 0.90102 0.89740 0.93086 0.92011 0.90743 0.91681 0.90630 0.88986 0.89715 0.89955 0.88131 0.88867 0.88890 0.86097 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.08 37.16 0.34 -1.87 16 2 C 0.14 1.67 3.21 -67.93 -0.22 1.45 16 3 C -0.17 -2.16 9.08 37.16 0.34 -1.82 16 4 N -0.60 -7.71 2.79 -167.38 -0.47 -8.17 16 5 C 0.11 0.95 6.25 -4.49 -0.03 0.93 16 6 C -0.13 -1.06 6.02 -26.60 -0.16 -1.22 16 7 C -0.12 -1.35 5.69 -26.52 -0.15 -1.51 16 8 C 0.08 1.35 2.70 -28.10 -0.08 1.28 16 9 H 0.11 1.97 7.16 -51.93 -0.37 1.60 16 10 O -0.35 -7.37 9.03 -46.55 -0.42 -7.79 16 11 C 0.51 12.88 7.29 34.41 0.25 13.13 16 12 O -0.50 -13.72 12.65 -19.45 -0.25 -13.96 16 13 C -0.25 -6.44 5.92 -104.39 -0.62 -7.06 16 14 C -0.04 -0.89 9.60 -39.20 -0.38 -1.27 16 15 C -0.25 -5.53 10.03 -39.37 -0.39 -5.92 16 16 C -0.09 -2.11 10.01 -39.59 -0.40 -2.50 16 17 C -0.15 -3.85 8.62 -38.88 -0.34 -4.19 16 18 C 0.15 4.09 5.52 -106.53 -0.59 3.50 16 19 C -0.41 -11.68 7.70 -37.82 -0.29 -11.97 16 20 H 0.11 3.17 5.88 -52.48 -0.31 2.86 16 21 C 0.07 1.82 5.27 -17.30 -0.09 1.73 16 22 N -0.79 -20.43 11.05 55.57 0.61 -19.81 16 23 Si 0.92 19.92 29.57 -169.99 -5.03 14.89 16 24 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C 0.50 8.70 6.64 -11.87 -0.08 8.62 16 28 O -0.51 -10.98 11.56 -11.00 -0.13 -11.11 16 29 H 0.09 1.48 5.84 -51.93 -0.30 1.17 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 33 H 0.08 1.40 6.00 -51.93 -0.31 1.09 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 42 H 0.10 2.10 7.61 -52.49 -0.40 1.70 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 45 H 0.12 3.17 6.51 -52.49 -0.34 2.82 16 46 H 0.28 6.61 8.29 -40.82 -0.34 6.28 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -32.62 369.10 -9.63 -42.25 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.64 Total: 6.87 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.88 Total: -8.71 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.15 Total: -27.99 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.79 Total: -32.87 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.62 -9.63 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748171853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.445 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds