Wall clock time and date at job start Tue Mar 31 2020 16:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47003 * 2 1 4 4 N 1.46501 * 109.46830 * 119.99621 * 2 1 3 5 5 C 1.45753 * 117.94699 * 120.00474 * 4 2 1 6 6 C 1.52914 * 110.48778 * 160.92721 * 5 4 2 7 7 C 1.53345 * 108.67898 * 50.74900 * 6 5 4 8 8 C 1.53071 * 108.42166 * 292.46946 * 7 6 5 9 9 H 1.09001 * 109.40306 * 288.85106 * 8 7 6 10 10 O 1.45208 * 109.39791 * 169.02982 * 8 7 6 11 11 C 1.34804 * 116.99842 * 150.00137 * 10 8 7 12 12 O 1.21522 * 120.00148 * 359.97438 * 11 10 8 13 13 C 1.47291 * 119.99478 * 179.97438 * 11 10 8 14 14 C 1.39285 * 120.29020 * 5.51276 * 13 11 10 15 15 C 1.38206 * 120.08430 * 179.72320 * 14 13 11 16 16 C 1.38829 * 120.68285 * 0.26242 * 15 14 13 17 17 C 1.37604 * 120.58484 * 359.97054 * 16 15 14 18 18 C 1.40700 * 119.88296 * 0.02825 * 17 16 15 19 19 C 1.40866 * 120.32767 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99597 * 213.31665 * 19 18 17 21 21 C 1.40295 * 120.00155 * 33.31800 * 19 18 17 22 22 N 1.30612 * 120.00228 * 8.75540 * 21 19 18 23 23 Si 1.86807 * 119.99929 * 188.75705 * 21 19 18 24 24 H 1.48508 * 109.46914 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47186 * 119.99776 * 23 21 19 26 26 H 1.48497 * 109.47111 * 240.00048 * 23 21 19 27 27 C 1.33356 * 117.94676 * 299.99904 * 4 2 1 28 28 O 1.21277 * 118.24772 * 2.22883 * 27 4 2 29 29 H 1.09001 * 109.47358 * 300.00480 * 1 2 3 30 30 H 1.09005 * 109.47440 * 60.00310 * 1 2 3 31 31 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47487 * 239.99759 * 2 1 3 33 33 H 1.09001 * 109.47456 * 59.99580 * 3 2 1 34 34 H 1.08999 * 109.46966 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46461 * 299.99549 * 3 2 1 36 36 H 1.08998 * 109.29860 * 40.60848 * 5 4 2 37 37 H 1.09007 * 109.29693 * 281.23460 * 5 4 2 38 38 H 1.09000 * 109.60010 * 290.98945 * 6 5 4 39 39 H 1.09002 * 109.60285 * 170.51074 * 6 5 4 40 40 H 1.09001 * 109.67283 * 172.73923 * 7 6 5 41 41 H 1.08997 * 109.67298 * 52.20495 * 7 6 5 42 42 H 1.07999 * 119.95631 * 0.02562 * 14 13 11 43 43 H 1.08000 * 119.65348 * 180.27732 * 15 14 13 44 44 H 1.08003 * 119.71067 * 179.97438 * 16 15 14 45 45 H 1.07999 * 120.05488 * 180.02562 * 17 16 15 46 46 H 0.96996 * 120.00503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8530 -1.8709 1.0107 6 6 3.6411 -2.1748 2.2854 7 6 2.6682 -2.1981 3.4705 8 6 2.1400 -0.7784 3.6907 9 1 2.9363 -0.1547 4.0969 10 8 1.0314 -0.8163 4.6278 11 6 0.8468 0.2721 5.4015 12 8 1.5920 1.2261 5.2961 13 6 -0.2584 0.3047 6.3747 14 6 -1.0451 -0.8257 6.5825 15 6 -2.0774 -0.7921 7.5009 16 6 -2.3471 0.3635 8.2215 17 6 -1.5906 1.4977 8.0348 18 6 -0.5338 1.4904 7.1060 19 6 0.2471 2.6459 6.9079 20 1 0.6503 2.8640 5.9300 21 6 0.5009 3.5135 7.9808 22 7 0.1623 3.1683 9.1941 23 14 1.3231 5.1626 7.6741 24 1 1.6048 5.3131 6.2237 25 1 0.4220 6.2556 8.1198 26 1 2.5967 5.2298 8.4347 27 6 1.6712 -0.1997 2.3866 28 8 0.9378 0.7657 2.4178 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.5486 -1.6948 0.1903 37 1 2.2206 -2.7244 0.7660 38 1 4.3923 -1.4011 2.4440 39 1 4.1272 -3.1460 2.1920 40 1 3.1885 -2.5390 4.3656 41 1 1.8377 -2.8687 3.2503 42 1 -0.8451 -1.7311 6.0288 43 1 -2.6802 -1.6740 7.6597 44 1 -3.1580 0.3725 8.9349 45 1 -1.8077 2.3918 8.6003 46 1 0.3375 3.7682 9.9358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748171853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:57 Heat of formation + Delta-G solvation = -117.059372 kcal Electronic energy + Delta-G solvation = -29407.874068 eV Core-core repulsion = 25454.507559 eV Total energy + Delta-G solvation = -3953.366509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15621 -40.83655 -39.09170 -37.61180 -37.31764 -35.84608 -35.53900 -32.22579 -31.86132 -31.48111 -30.15912 -28.15227 -27.52216 -25.62170 -24.67693 -23.96719 -22.90234 -22.09255 -21.48792 -19.75831 -19.35282 -18.65890 -18.12181 -17.63814 -17.16854 -16.98706 -16.45551 -16.14112 -16.00702 -15.35802 -15.30253 -15.27699 -14.81088 -14.73068 -14.53566 -14.42681 -14.16646 -13.93374 -13.58309 -13.30579 -13.05467 -13.02609 -12.91453 -12.77790 -12.69216 -12.56084 -12.46423 -12.38197 -12.23161 -12.09920 -11.96911 -11.84797 -11.73204 -11.56277 -11.22490 -10.69619 -10.32492 -9.71448 -9.53839 -9.35200 -8.77471 -6.49049 0.32048 0.95281 1.27431 1.28511 1.42889 1.44599 1.80455 2.09691 2.16269 2.17301 2.67708 3.38740 3.60628 3.63795 3.69845 3.91314 3.98974 4.03070 4.12061 4.27486 4.36867 4.39051 4.46709 4.56800 4.58933 4.70027 4.73016 4.80076 4.84782 4.86392 4.90149 4.97691 5.00503 5.04116 5.16083 5.22527 5.24743 5.26485 5.34260 5.49095 5.60168 5.66560 5.77378 5.98422 6.03311 6.26050 6.41123 6.60088 6.74654 6.85208 7.11372 7.24433 8.19468 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.004017 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.650233 B = 6969.432465 C = 7903.675195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 C -0.168 4.168 4 N -0.593 5.593 5 C 0.101 3.899 6 C -0.124 4.124 7 C -0.110 4.110 8 C 0.067 3.933 9 H 0.086 0.914 10 O -0.347 6.347 11 C 0.509 3.491 12 O -0.536 6.536 13 C -0.276 4.276 14 C -0.041 4.041 15 C -0.236 4.236 16 C -0.083 4.083 17 C -0.174 4.174 18 C 0.119 3.881 19 C -0.455 4.455 20 H 0.075 0.925 21 C 0.036 3.964 22 N -0.810 5.810 23 Si 0.979 3.021 24 H -0.277 1.277 25 H -0.248 1.248 26 H -0.259 1.259 27 C 0.494 3.506 28 O -0.568 6.568 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.131 0.869 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.110 0.890 46 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -12.313 -15.440 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.036 3.964 3 C -0.226 4.226 4 N -0.327 5.327 5 C -0.020 4.020 6 C -0.162 4.162 7 C -0.148 4.148 8 C 0.008 3.992 9 H 0.104 0.896 10 O -0.264 6.264 11 C 0.359 3.641 12 O -0.428 6.428 13 C -0.278 4.278 14 C -0.059 4.059 15 C -0.255 4.255 16 C -0.101 4.101 17 C -0.193 4.193 18 C 0.115 3.885 19 C -0.483 4.483 20 H 0.093 0.907 21 C -0.180 4.180 22 N -0.435 5.435 23 Si 0.800 3.200 24 H -0.202 1.202 25 H -0.171 1.171 26 H -0.184 1.184 27 C 0.281 3.719 28 O -0.447 6.447 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.149 0.851 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.128 0.872 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.421 -11.496 -15.206 20.115 hybrid contribution 0.335 1.305 0.311 1.383 sum 6.756 -10.191 -14.896 19.271 Atomic orbital electron populations 1.22183 0.95837 1.02080 1.02552 1.21265 0.94287 0.93297 0.87531 1.22164 1.01055 0.96947 1.02443 1.47631 1.50866 1.29696 1.04551 1.21904 0.94010 0.86402 0.99660 1.21940 0.96974 1.05779 0.91489 1.21843 1.00545 0.90739 1.01671 1.22749 0.88558 1.01824 0.86028 0.89575 1.86643 1.50087 1.41873 1.47808 1.21382 0.84209 0.79490 0.78989 1.90691 1.47391 1.36240 1.68430 1.19150 1.02585 0.97291 1.08813 1.21128 0.93377 0.95755 0.95689 1.20841 1.02622 0.99335 1.02667 1.21268 0.98153 0.92920 0.97788 1.21317 0.96549 0.99044 1.02407 1.17829 0.90573 0.90761 0.89301 1.20184 1.26327 1.04589 0.97216 0.90655 1.26787 0.94827 1.02507 0.93885 1.69704 1.36118 1.37288 1.00402 0.85216 0.78995 0.76798 0.79017 1.20161 1.17139 1.18353 1.20536 0.81044 0.83769 0.86510 1.90697 1.37576 1.28629 1.87794 0.94343 0.90154 0.92165 0.85106 0.94756 0.92084 0.89984 0.87198 0.89276 0.91106 0.84665 0.88806 0.89140 0.85621 0.84506 0.85254 0.87189 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.08 71.98 0.65 -3.60 16 2 C 0.14 2.98 3.21 44.99 0.14 3.12 16 3 C -0.17 -4.22 9.08 71.98 0.65 -3.57 16 4 N -0.59 -14.23 2.79 -802.65 -2.24 -16.47 16 5 C 0.10 1.26 6.25 86.49 0.54 1.80 16 6 C -0.12 -1.54 6.02 30.68 0.18 -1.36 16 7 C -0.11 -2.34 5.69 30.73 0.17 -2.16 16 8 C 0.07 2.38 2.70 29.71 0.08 2.46 16 9 H 0.09 3.40 7.16 -2.39 -0.02 3.38 16 10 O -0.35 -15.42 9.03 -51.64 -0.47 -15.89 16 11 C 0.51 27.54 7.29 70.20 0.51 28.05 16 12 O -0.54 -32.05 12.65 19.92 0.25 -31.80 16 13 C -0.28 -15.16 5.92 -19.71 -0.12 -15.28 16 14 C -0.04 -1.91 9.60 22.51 0.22 -1.70 16 15 C -0.24 -9.97 10.03 22.40 0.22 -9.74 16 16 C -0.08 -3.73 10.01 22.26 0.22 -3.50 16 17 C -0.17 -9.30 8.62 22.72 0.20 -9.11 16 18 C 0.12 6.98 5.52 -21.10 -0.12 6.86 16 19 C -0.46 -27.68 7.70 23.41 0.18 -27.50 16 20 H 0.08 4.95 5.88 -2.91 -0.02 4.93 16 21 C 0.04 1.99 5.27 85.37 0.45 2.44 16 22 N -0.81 -43.50 11.05 21.88 0.24 -43.26 16 23 Si 0.98 42.92 29.57 68.60 2.03 44.95 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 C 0.49 17.76 6.64 87.71 0.58 18.34 16 28 O -0.57 -26.60 11.56 12.81 0.15 -26.45 16 29 H 0.04 1.38 5.84 -2.39 -0.01 1.36 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.13 1.61 7.79 -2.39 -0.02 1.59 16 33 H 0.03 1.22 6.00 -2.39 -0.01 1.21 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.11 0.72 8.03 -2.39 -0.02 0.70 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 39 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 42 H 0.13 5.09 7.61 -2.91 -0.02 5.06 16 43 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 44 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 45 H 0.11 6.00 6.51 -2.91 -0.02 5.98 16 46 H 0.29 14.04 8.29 -92.71 -0.77 13.27 16 Total: -1.00 -81.62 369.10 5.74 -75.88 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.99 Total: 27.47 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.78 Total: -14.45 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -2.00 Total: -59.72 kcal Atomic # 8 Polarization: -74.07 SS G_CDS: -0.07 Total: -74.13 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -81.62 5.74 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748171853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.175 kcal (2) G-P(sol) polarization free energy of solvation -81.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds