Wall clock time and date at job start Tue Mar 31 2020 16:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46780 * 2 1 4 4 N 1.46498 * 109.46845 * 119.99814 * 2 1 3 5 5 C 1.45755 * 117.94490 * 120.02640 * 4 2 1 6 6 C 1.52896 * 110.52471 * 160.96420 * 5 4 2 7 7 C 1.53350 * 108.69063 * 50.66212 * 6 5 4 8 8 C 1.53063 * 108.45609 * 292.53765 * 7 6 5 9 9 H 1.09003 * 109.40605 * 288.75526 * 8 7 6 10 10 O 1.45195 * 109.40341 * 168.92464 * 8 7 6 11 11 C 1.34712 * 117.00311 * 150.00059 * 10 8 7 12 12 O 1.21458 * 119.99988 * 0.02562 * 11 10 8 13 13 C 1.47765 * 119.99791 * 180.02562 * 11 10 8 14 14 C 1.39965 * 120.03512 * 359.71728 * 13 11 10 15 15 C 1.38321 * 120.35486 * 179.78629 * 14 13 11 16 16 C 1.37759 * 120.41540 * 0.47628 * 15 14 13 17 17 C 1.40750 * 120.05346 * 359.78385 * 16 15 14 18 18 C 1.41439 * 120.17804 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99812 * 24.43736 * 18 17 16 20 20 C 1.39939 * 119.99825 * 204.44656 * 18 17 16 21 21 N 1.30825 * 120.00418 * 17.89397 * 20 18 17 22 22 Si 1.86801 * 119.99573 * 197.89592 * 20 18 17 23 23 H 1.48503 * 109.47121 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47126 * 119.99691 * 22 20 18 25 25 H 1.48499 * 109.46873 * 239.99931 * 22 20 18 26 26 C 1.39055 * 120.02898 * 179.97438 * 13 11 10 27 27 C 1.33358 * 117.94969 * 300.00055 * 4 2 1 28 28 O 1.21280 * 118.24455 * 2.20370 * 27 4 2 29 29 H 1.09004 * 109.47153 * 299.99680 * 1 2 3 30 30 H 1.08996 * 109.47095 * 60.00042 * 1 2 3 31 31 H 1.09003 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46722 * 239.99984 * 2 1 3 33 33 H 1.09005 * 109.46972 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47272 * 299.99849 * 3 2 1 35 35 H 1.09004 * 109.47526 * 60.00374 * 3 2 1 36 36 H 1.09006 * 109.29769 * 281.23510 * 5 4 2 37 37 H 1.08995 * 109.30252 * 40.60471 * 5 4 2 38 38 H 1.09004 * 109.55096 * 290.92764 * 6 5 4 39 39 H 1.08996 * 109.63718 * 170.45152 * 6 5 4 40 40 H 1.09003 * 109.67058 * 172.79055 * 7 6 5 41 41 H 1.08995 * 109.67253 * 52.29254 * 7 6 5 42 42 H 1.08002 * 119.82277 * 0.02562 * 14 13 11 43 43 H 1.07998 * 119.78720 * 180.23828 * 15 14 13 44 44 H 1.08004 * 119.97070 * 179.76293 * 16 15 14 45 45 H 0.96996 * 120.00177 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.20088 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8535 -1.8706 1.0106 6 6 3.6411 -2.1758 2.2850 7 6 2.6684 -2.1983 3.4703 8 6 2.1401 -0.7787 3.6906 9 1 2.9360 -0.1553 4.0982 10 8 1.0304 -0.8168 4.6261 11 6 0.8449 0.2703 5.3997 12 8 1.5896 1.2242 5.2953 13 6 -0.2645 0.3024 6.3753 14 6 -1.1266 -0.7940 6.4920 15 6 -2.1646 -0.7729 7.4061 16 6 -2.3679 0.3307 8.2050 17 6 -1.5147 1.4450 8.0983 18 6 -1.7207 2.5793 8.9177 19 1 -2.2360 2.4774 9.8613 20 6 -1.2569 3.8337 8.5057 21 7 -0.9561 4.0395 7.2492 22 14 -1.0672 5.2141 9.7498 23 1 -1.4713 4.7283 11.0937 24 1 0.3503 5.6549 9.7879 25 1 -1.9305 6.3567 9.3568 26 6 -0.4562 1.4240 7.1745 27 6 1.6713 -0.1998 2.3866 28 8 0.9382 0.7658 2.4178 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.2214 -2.7243 0.7656 37 1 3.5491 -1.6943 0.1902 38 1 4.3927 -1.4024 2.4433 39 1 4.1266 -3.1472 2.1918 40 1 3.1887 -2.5392 4.3655 41 1 1.8378 -2.8690 3.2507 42 1 -0.9783 -1.6628 5.8677 43 1 -2.8220 -1.6255 7.4911 44 1 -3.1829 0.3410 8.9137 45 1 -0.6342 4.9089 6.9637 46 1 0.2042 2.2739 7.0854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748177088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:06 Heat of formation + Delta-G solvation = -102.327149 kcal Electronic energy + Delta-G solvation = -28939.680296 eV Core-core repulsion = 24986.952624 eV Total energy + Delta-G solvation = -3952.727672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04592 -39.43997 -37.37598 -36.58716 -36.03022 -34.67989 -33.70464 -31.15056 -30.33170 -29.48988 -29.16679 -27.17744 -25.40382 -24.67540 -23.61977 -22.71437 -21.22487 -20.95202 -19.83602 -18.69361 -17.86555 -17.27956 -16.63731 -16.21399 -15.85860 -15.44305 -15.05644 -14.88427 -14.62886 -14.30028 -14.05721 -13.91091 -13.71384 -13.44863 -13.21879 -13.06351 -12.77073 -12.52424 -12.33562 -12.05435 -11.89672 -11.75407 -11.63798 -11.54239 -11.29853 -11.22886 -11.10497 -10.99640 -10.95124 -10.77967 -10.69238 -10.47223 -10.13980 -9.68797 -9.42929 -9.20908 -9.15688 -8.77387 -7.69700 -7.51768 -6.78404 -4.39914 2.03792 2.46335 2.79696 2.82240 3.09325 3.14151 3.16274 3.35767 3.67851 3.93383 4.33743 4.41655 4.50123 4.57625 4.63035 4.88642 5.00771 5.03155 5.11889 5.14255 5.25113 5.42254 5.46278 5.58383 5.62481 5.65444 5.68508 5.70664 5.78846 5.88587 5.94703 6.15970 6.22132 6.36961 6.43590 6.59973 6.65828 6.94503 6.98607 7.03490 7.20864 7.34988 7.38900 7.72266 7.79312 7.94785 8.14161 8.21623 8.48083 8.61197 8.80962 8.82772 10.16666 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003228 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.713243 B = 8671.039442 C = 9379.787708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.142 3.858 3 C -0.172 4.172 4 N -0.603 5.603 5 C 0.112 3.888 6 C -0.132 4.132 7 C -0.119 4.119 8 C 0.077 3.923 9 H 0.111 0.889 10 O -0.335 6.335 11 C 0.516 3.484 12 O -0.505 6.505 13 C -0.110 4.110 14 C -0.195 4.195 15 C -0.103 4.103 16 C -0.203 4.203 17 C 0.096 3.904 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.088 4.088 27 C 0.503 3.497 28 O -0.511 6.511 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.285 0.715 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -11.424 -13.141 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.039 3.961 3 C -0.230 4.230 4 N -0.339 5.339 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.156 4.156 8 C 0.018 3.982 9 H 0.129 0.871 10 O -0.252 6.252 11 C 0.362 3.638 12 O -0.393 6.393 13 C -0.111 4.111 14 C -0.215 4.215 15 C -0.121 4.121 16 C -0.223 4.223 17 C 0.094 3.906 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.108 4.108 27 C 0.289 3.711 28 O -0.385 6.385 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.035 -10.430 -13.306 19.170 hybrid contribution 0.229 0.674 0.194 0.738 sum 9.264 -9.756 -13.113 18.787 Atomic orbital electron populations 1.22257 0.94584 1.02119 1.04113 1.21047 0.95143 0.93473 0.86415 1.22226 1.00542 0.96176 1.04038 1.47487 1.51530 1.29046 1.05836 1.21444 0.93530 0.87681 0.98426 1.21864 0.98025 1.03682 0.93416 1.21736 0.99727 0.94600 0.99561 1.22358 0.90098 0.98721 0.87031 0.87138 1.86727 1.48395 1.42698 1.47348 1.21861 0.84172 0.79209 0.78528 1.90749 1.45950 1.35183 1.67401 1.18794 0.95683 0.97979 0.98670 1.20540 0.99470 0.97961 1.03501 1.20492 0.97361 0.97391 0.96894 1.21167 1.01105 0.96135 1.03900 1.17537 0.89408 0.92443 0.91239 1.19593 1.32920 0.91337 1.05079 0.89910 1.25976 0.92794 1.00421 0.95455 1.69798 1.30659 1.24782 1.15549 0.86235 0.78920 0.80044 0.81416 1.18305 1.19582 1.19908 1.21655 0.97873 0.95518 0.95726 1.20347 0.81333 0.84260 0.85116 1.90718 1.34790 1.26165 1.86860 0.89442 0.92037 0.92994 0.89955 0.93054 0.91884 0.89782 0.91534 0.90579 0.90590 0.88783 0.89548 0.89708 0.88033 0.88578 0.88365 0.90425 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.08 37.16 0.34 -1.83 16 2 C 0.14 1.59 3.21 -67.93 -0.22 1.37 16 3 C -0.17 -2.09 9.08 37.16 0.34 -1.75 16 4 N -0.60 -7.24 2.79 -167.39 -0.47 -7.71 16 5 C 0.11 0.85 6.25 -4.50 -0.03 0.82 16 6 C -0.13 -0.93 6.02 -26.60 -0.16 -1.09 16 7 C -0.12 -1.22 5.69 -26.52 -0.15 -1.37 16 8 C 0.08 1.22 2.70 -28.10 -0.08 1.14 16 9 H 0.11 1.82 7.16 -51.93 -0.37 1.45 16 10 O -0.33 -6.68 9.00 -46.31 -0.42 -7.10 16 11 C 0.52 12.35 7.34 34.63 0.25 12.60 16 12 O -0.51 -13.12 15.40 -19.42 -0.30 -13.41 16 13 C -0.11 -2.79 5.87 -105.05 -0.62 -3.40 16 14 C -0.20 -4.48 9.62 -38.90 -0.37 -4.85 16 15 C -0.10 -2.30 10.01 -39.73 -0.40 -2.69 16 16 C -0.20 -4.93 9.78 -38.81 -0.38 -5.31 16 17 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 18 C -0.46 -12.24 9.05 -37.73 -0.34 -12.58 16 19 H 0.08 2.08 7.91 -52.49 -0.42 1.66 16 20 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 21 N -0.78 -21.31 10.96 55.55 0.61 -20.70 16 22 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.09 -2.43 8.24 -38.42 -0.32 -2.75 16 27 C 0.50 8.28 6.64 -11.87 -0.08 8.20 16 28 O -0.51 -10.70 11.55 -11.09 -0.13 -10.83 16 29 H 0.09 1.46 5.84 -51.93 -0.30 1.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.36 6.00 -51.93 -0.31 1.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.42 8.03 -51.93 -0.42 0.00 16 38 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 42 H 0.10 2.10 7.59 -52.49 -0.40 1.70 16 43 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 45 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 46 H 0.14 3.97 5.74 -52.49 -0.30 3.67 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -32.87 373.62 -9.70 -42.57 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.71 Total: 7.27 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.89 Total: -9.70 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.14 Total: -28.41 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.84 Total: -31.34 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.87 -9.70 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748177088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.755 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds