Wall clock time and date at job start Tue Mar 31 2020 16:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46780 * 2 1 4 4 N 1.46498 * 109.46845 * 119.99814 * 2 1 3 5 5 C 1.45755 * 117.94490 * 120.02640 * 4 2 1 6 6 C 1.52896 * 110.52471 * 160.96420 * 5 4 2 7 7 C 1.53350 * 108.69063 * 50.66212 * 6 5 4 8 8 C 1.53063 * 108.45609 * 292.53765 * 7 6 5 9 9 H 1.09003 * 109.40605 * 288.75526 * 8 7 6 10 10 O 1.45195 * 109.40341 * 168.92464 * 8 7 6 11 11 C 1.34712 * 117.00311 * 150.00059 * 10 8 7 12 12 O 1.21458 * 119.99988 * 0.02562 * 11 10 8 13 13 C 1.47765 * 119.99791 * 180.02562 * 11 10 8 14 14 C 1.39965 * 120.03512 * 359.71728 * 13 11 10 15 15 C 1.38321 * 120.35486 * 179.78629 * 14 13 11 16 16 C 1.37759 * 120.41540 * 0.47628 * 15 14 13 17 17 C 1.40750 * 120.05346 * 359.78385 * 16 15 14 18 18 C 1.41439 * 120.17804 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99812 * 24.43736 * 18 17 16 20 20 C 1.39939 * 119.99825 * 204.44656 * 18 17 16 21 21 N 1.30825 * 120.00418 * 17.89397 * 20 18 17 22 22 Si 1.86801 * 119.99573 * 197.89592 * 20 18 17 23 23 H 1.48503 * 109.47121 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47126 * 119.99691 * 22 20 18 25 25 H 1.48499 * 109.46873 * 239.99931 * 22 20 18 26 26 C 1.39055 * 120.02898 * 179.97438 * 13 11 10 27 27 C 1.33358 * 117.94969 * 300.00055 * 4 2 1 28 28 O 1.21280 * 118.24455 * 2.20370 * 27 4 2 29 29 H 1.09004 * 109.47153 * 299.99680 * 1 2 3 30 30 H 1.08996 * 109.47095 * 60.00042 * 1 2 3 31 31 H 1.09003 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46722 * 239.99984 * 2 1 3 33 33 H 1.09005 * 109.46972 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47272 * 299.99849 * 3 2 1 35 35 H 1.09004 * 109.47526 * 60.00374 * 3 2 1 36 36 H 1.09006 * 109.29769 * 281.23510 * 5 4 2 37 37 H 1.08995 * 109.30252 * 40.60471 * 5 4 2 38 38 H 1.09004 * 109.55096 * 290.92764 * 6 5 4 39 39 H 1.08996 * 109.63718 * 170.45152 * 6 5 4 40 40 H 1.09003 * 109.67058 * 172.79055 * 7 6 5 41 41 H 1.08995 * 109.67253 * 52.29254 * 7 6 5 42 42 H 1.08002 * 119.82277 * 0.02562 * 14 13 11 43 43 H 1.07998 * 119.78720 * 180.23828 * 15 14 13 44 44 H 1.08004 * 119.97070 * 179.76293 * 16 15 14 45 45 H 0.96996 * 120.00177 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.20088 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8535 -1.8706 1.0106 6 6 3.6411 -2.1758 2.2850 7 6 2.6684 -2.1983 3.4703 8 6 2.1401 -0.7787 3.6906 9 1 2.9360 -0.1553 4.0982 10 8 1.0304 -0.8168 4.6261 11 6 0.8449 0.2703 5.3997 12 8 1.5896 1.2242 5.2953 13 6 -0.2645 0.3024 6.3753 14 6 -1.1266 -0.7940 6.4920 15 6 -2.1646 -0.7729 7.4061 16 6 -2.3679 0.3307 8.2050 17 6 -1.5147 1.4450 8.0983 18 6 -1.7207 2.5793 8.9177 19 1 -2.2360 2.4774 9.8613 20 6 -1.2569 3.8337 8.5057 21 7 -0.9561 4.0395 7.2492 22 14 -1.0672 5.2141 9.7498 23 1 -1.4713 4.7283 11.0937 24 1 0.3503 5.6549 9.7879 25 1 -1.9305 6.3567 9.3568 26 6 -0.4562 1.4240 7.1745 27 6 1.6713 -0.1998 2.3866 28 8 0.9382 0.7658 2.4178 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.2214 -2.7243 0.7656 37 1 3.5491 -1.6943 0.1902 38 1 4.3927 -1.4024 2.4433 39 1 4.1266 -3.1472 2.1918 40 1 3.1887 -2.5392 4.3655 41 1 1.8378 -2.8690 3.2507 42 1 -0.9783 -1.6628 5.8677 43 1 -2.8220 -1.6255 7.4911 44 1 -3.1829 0.3410 8.9137 45 1 -0.6342 4.9089 6.9637 46 1 0.2042 2.2739 7.0854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748177088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:05 Heat of formation + Delta-G solvation = -120.834320 kcal Electronic energy + Delta-G solvation = -28940.482827 eV Core-core repulsion = 24986.952624 eV Total energy + Delta-G solvation = -3953.530203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30151 -41.05107 -39.21962 -37.74026 -37.56920 -35.86933 -35.60204 -32.42952 -31.89483 -31.39769 -30.26366 -28.17117 -27.34137 -25.88877 -24.84011 -24.09110 -22.88651 -22.13485 -21.59701 -19.84362 -19.66700 -18.57673 -18.10797 -17.80522 -17.22804 -16.78061 -16.56090 -16.49113 -16.23052 -15.40390 -15.33809 -15.28657 -14.92973 -14.83137 -14.58468 -14.41049 -14.26971 -13.99895 -13.60738 -13.36281 -13.09852 -13.05687 -12.89562 -12.83493 -12.70874 -12.59666 -12.53661 -12.35114 -12.22334 -12.21099 -12.05349 -11.87322 -11.75646 -11.57203 -11.30374 -11.12893 -10.40539 -9.75044 -9.64903 -9.48109 -8.70948 -6.43084 0.10606 0.93194 1.12511 1.35044 1.43032 1.52663 1.69154 1.86031 1.99617 2.16954 2.69655 3.31503 3.54256 3.59777 3.62449 3.79384 3.95248 3.96461 4.05491 4.20085 4.26115 4.39309 4.43481 4.56928 4.58680 4.68153 4.70243 4.78729 4.82572 4.83629 4.88042 4.95484 4.99421 5.01675 5.09514 5.15139 5.23573 5.24630 5.29841 5.33923 5.41243 5.63108 5.78746 5.85329 5.97807 6.19359 6.36725 6.49899 6.76107 6.82956 6.86479 7.06938 8.26473 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003228 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.713243 B = 8671.039442 C = 9379.787708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 C -0.169 4.169 4 N -0.590 5.590 5 C 0.099 3.901 6 C -0.124 4.124 7 C -0.111 4.111 8 C 0.065 3.935 9 H 0.094 0.906 10 O -0.331 6.331 11 C 0.517 3.483 12 O -0.539 6.539 13 C -0.128 4.128 14 C -0.183 4.183 15 C -0.096 4.096 16 C -0.203 4.203 17 C 0.067 3.933 18 C -0.492 4.492 19 H 0.091 0.909 20 C 0.027 3.973 21 N -0.829 5.829 22 Si 0.987 3.013 23 H -0.246 1.246 24 H -0.271 1.271 25 H -0.265 1.265 26 C -0.125 4.125 27 C 0.492 3.508 28 O -0.570 6.570 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.287 0.713 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 -14.749 -14.602 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.036 3.964 3 C -0.227 4.227 4 N -0.324 5.324 5 C -0.022 4.022 6 C -0.162 4.162 7 C -0.148 4.148 8 C 0.006 3.994 9 H 0.112 0.888 10 O -0.247 6.247 11 C 0.365 3.635 12 O -0.430 6.430 13 C -0.129 4.129 14 C -0.203 4.203 15 C -0.114 4.114 16 C -0.223 4.223 17 C 0.065 3.935 18 C -0.521 4.521 19 H 0.109 0.891 20 C -0.187 4.187 21 N -0.455 5.455 22 Si 0.807 3.193 23 H -0.169 1.169 24 H -0.196 1.196 25 H -0.189 1.189 26 C -0.144 4.144 27 C 0.279 3.721 28 O -0.450 6.450 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.148 0.852 43 H 0.162 0.838 44 H 0.137 0.863 45 H 0.097 0.903 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.697 -13.839 -14.804 22.466 hybrid contribution 0.048 1.513 0.481 1.588 sum 9.745 -12.326 -14.322 21.261 Atomic orbital electron populations 1.22194 0.95902 1.02135 1.02542 1.21272 0.94221 0.93327 0.87555 1.22170 1.01147 0.96911 1.02448 1.47620 1.50688 1.29655 1.04483 1.21932 0.94050 0.86336 0.99835 1.21946 0.96950 1.05949 0.91313 1.21873 1.00681 0.90317 1.01947 1.22932 0.88123 1.02463 0.85852 0.88831 1.86647 1.50144 1.40455 1.47469 1.21724 0.83513 0.79610 0.78648 1.90716 1.47150 1.36622 1.68514 1.19099 0.96808 0.98280 0.98734 1.20931 0.98438 0.97664 1.03251 1.20966 0.97204 0.98056 0.95189 1.21516 1.00826 0.95743 1.04217 1.17911 0.89968 0.93952 0.91698 1.19915 1.34446 0.92097 1.05679 0.89059 1.26957 0.91677 1.03002 0.97111 1.69916 1.32177 1.25544 1.17864 0.85094 0.78757 0.76529 0.78958 1.16900 1.19576 1.18949 1.21452 0.98828 0.95847 0.98308 1.20524 0.81133 0.83804 0.86605 1.90723 1.37706 1.28716 1.87811 0.94391 0.90214 0.92068 0.85001 0.91908 0.90050 0.94766 0.89215 0.87144 0.90911 0.84528 0.88292 0.88961 0.85185 0.83803 0.86298 0.90298 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 9.08 71.98 0.65 -3.53 16 2 C 0.14 2.83 3.21 44.99 0.14 2.97 16 3 C -0.17 -4.07 9.08 71.98 0.65 -3.42 16 4 N -0.59 -13.15 2.79 -802.67 -2.24 -15.38 16 5 C 0.10 1.05 6.25 86.49 0.54 1.59 16 6 C -0.12 -1.24 6.02 30.68 0.18 -1.05 16 7 C -0.11 -2.01 5.69 30.73 0.17 -1.84 16 8 C 0.06 2.09 2.70 29.71 0.08 2.17 16 9 H 0.09 3.31 7.16 -2.39 -0.02 3.29 16 10 O -0.33 -13.63 9.00 -50.68 -0.46 -14.08 16 11 C 0.52 26.32 7.34 70.34 0.52 26.84 16 12 O -0.54 -30.49 15.40 20.15 0.31 -30.18 16 13 C -0.13 -6.78 5.87 -20.14 -0.12 -6.90 16 14 C -0.18 -8.30 9.62 22.71 0.22 -8.09 16 15 C -0.10 -4.10 10.01 22.18 0.22 -3.87 16 16 C -0.20 -9.79 9.78 22.77 0.22 -9.57 16 17 C 0.07 3.76 5.57 -21.32 -0.12 3.64 16 18 C -0.49 -27.24 9.05 23.47 0.21 -27.03 16 19 H 0.09 4.69 7.91 -2.91 -0.02 4.67 16 20 C 0.03 1.46 5.14 85.25 0.44 1.90 16 21 N -0.83 -48.32 10.96 21.82 0.24 -48.08 16 22 Si 0.99 40.43 29.60 68.60 2.03 42.46 16 23 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C -0.12 -7.32 8.24 23.02 0.19 -7.14 16 27 C 0.49 16.67 6.64 87.71 0.58 17.25 16 28 O -0.57 -25.84 11.55 12.89 0.15 -25.69 16 29 H 0.04 1.34 5.84 -2.39 -0.01 1.32 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.13 1.48 7.79 -2.39 -0.02 1.46 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 1.19 6.00 -2.39 -0.01 1.17 16 36 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 37 H 0.11 0.54 8.03 -2.39 -0.02 0.52 16 38 H 0.07 0.82 8.12 -2.38 -0.02 0.80 16 39 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 42 H 0.13 5.09 7.59 -2.91 -0.02 5.07 16 43 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 44 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 45 H 0.29 15.41 8.30 -92.71 -0.77 14.64 16 46 H 0.10 6.57 5.74 -2.91 -0.02 6.56 16 Total: -1.00 -82.28 373.62 5.82 -76.47 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.98 Total: 30.56 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 4.80 Total: -16.06 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -2.00 Total: -63.46 kcal Atomic # 8 Polarization: -69.96 SS G_CDS: 0.00 Total: -69.96 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -82.28 5.82 -76.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748177088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.368 kcal (2) G-P(sol) polarization free energy of solvation -82.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds