Wall clock time and date at job start Tue Mar 31 2020 17:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.59123 * 2 1 4 4 C 1.53192 * 109.58962 * 239.71544 * 2 1 3 5 5 C 1.53043 * 109.31728 * 185.57969 * 4 2 1 6 6 C 1.53041 * 109.52684 * 61.37053 * 5 4 2 7 7 C 1.53199 * 109.31080 * 298.61677 * 6 5 4 8 8 N 1.46925 * 108.76408 * 54.65675 * 7 6 5 9 9 C 1.34779 * 120.62827 * 126.36159 * 8 7 6 10 10 O 1.21279 * 119.99768 * 184.81626 * 9 8 7 11 11 C 1.50693 * 119.99944 * 4.82074 * 9 8 7 12 12 O 1.45205 * 109.47012 * 180.02562 * 11 9 8 13 13 C 1.34773 * 117.00026 * 179.97438 * 12 11 9 14 14 O 1.21505 * 120.00347 * 0.02562 * 13 12 11 15 15 C 1.47510 * 120.00130 * 179.97438 * 13 12 11 16 16 C 1.40068 * 119.89610 * 359.72600 * 15 13 12 17 17 C 1.36303 * 120.09545 * 179.72093 * 16 15 13 18 18 C 1.40900 * 119.89957 * 0.54832 * 17 16 15 19 19 C 1.41089 * 120.09755 * 179.74209 * 18 17 16 20 20 H 1.08002 * 119.99859 * 205.47494 * 19 18 17 21 21 C 1.40245 * 119.99991 * 25.48244 * 19 18 17 22 22 N 1.30633 * 120.00387 * 16.74042 * 21 19 18 23 23 Si 1.86800 * 119.99829 * 196.73727 * 21 19 18 24 24 H 1.48504 * 109.46798 * 90.00273 * 23 21 19 25 25 H 1.48505 * 109.47106 * 209.99701 * 23 21 19 26 26 H 1.48499 * 109.47525 * 330.00014 * 23 21 19 27 27 C 1.40902 * 119.80278 * 359.72758 * 18 17 16 28 28 C 1.36300 * 119.89629 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46950 * 183.86052 * 1 2 3 30 30 H 1.09004 * 109.47004 * 303.85942 * 1 2 3 31 31 H 1.09000 * 109.46901 * 63.85496 * 1 2 3 32 32 H 1.08997 * 109.49466 * 65.62339 * 4 2 1 33 33 H 1.09002 * 109.49775 * 305.53233 * 4 2 1 34 34 H 1.08997 * 109.46038 * 181.38415 * 5 4 2 35 35 H 1.08997 * 109.45516 * 301.36015 * 5 4 2 36 36 H 1.08998 * 109.49589 * 58.58257 * 6 5 4 37 37 H 1.08995 * 109.49297 * 178.68126 * 6 5 4 38 38 H 1.08998 * 109.59530 * 294.86920 * 7 6 5 39 39 H 1.08997 * 109.70035 * 174.50899 * 7 6 5 40 40 H 1.09001 * 109.47042 * 299.99720 * 11 9 8 41 41 H 1.08998 * 109.47445 * 60.00295 * 11 9 8 42 42 H 1.07994 * 119.95240 * 0.02562 * 16 15 13 43 43 H 1.08001 * 120.04923 * 180.28009 * 17 16 15 44 44 H 0.96995 * 120.00331 * 180.02562 * 22 21 19 45 45 H 1.07999 * 120.04864 * 180.02562 * 27 18 17 46 46 H 1.07998 * 119.94684 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5676 -0.8466 -1.1712 6 6 3.9567 -1.6660 0.0614 7 6 3.4651 -0.9486 1.3226 8 7 2.0226 -0.7010 1.1936 9 6 1.1674 -1.1096 2.1518 10 8 -0.0279 -0.9779 1.9941 11 6 1.6964 -1.7300 3.4192 12 8 0.5857 -2.0837 4.2851 13 6 0.8895 -2.6542 5.4678 14 8 2.0506 -2.8502 5.7673 15 6 -0.1875 -3.0395 6.3991 16 6 -1.5250 -2.8063 6.0546 17 6 -2.5237 -3.1660 6.9096 18 6 -2.2085 -3.7626 8.1465 19 6 -3.2387 -4.1315 9.0371 20 1 -3.0397 -4.1943 10.0968 21 6 -4.5211 -4.4169 8.5463 22 7 -4.6941 -4.6634 7.2751 23 14 -5.9818 -4.4448 9.7103 24 1 -6.5823 -3.0886 9.7834 25 1 -6.9951 -5.4084 9.2101 26 1 -5.5295 -4.8595 11.0626 27 6 -0.8613 -3.9899 8.4913 28 6 0.1306 -3.6326 7.6275 29 1 -0.3633 -1.0253 0.0692 30 1 -0.3633 0.5726 0.8534 31 1 -0.3633 0.4528 -0.9225 32 1 1.7660 -0.1642 -2.1370 33 1 1.6030 -1.7237 -1.2935 34 1 3.9378 -1.3423 -2.0685 35 1 4.0061 0.1486 -1.0988 36 1 3.4979 -2.6529 0.0018 37 1 5.0409 -1.7701 0.1015 38 1 3.9903 0.0002 1.4316 39 1 3.6521 -1.5723 2.1967 40 1 2.2657 -2.6268 3.1745 41 1 2.3433 -1.0170 3.9303 42 1 -1.7655 -2.3454 5.1080 43 1 -3.5549 -2.9899 6.6413 44 1 -5.5811 -4.8604 6.9356 45 1 -0.6152 -4.4474 9.4382 46 1 1.1634 -3.8061 7.8911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758677801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:34 Heat of formation + Delta-G solvation = -100.462653 kcal Electronic energy + Delta-G solvation = -27760.633914 eV Core-core repulsion = 23807.987093 eV Total energy + Delta-G solvation = -3952.646821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74644 -39.51317 -37.64777 -37.28160 -35.57097 -33.93608 -33.43078 -32.92787 -30.43977 -29.49382 -28.73854 -27.43054 -25.97341 -24.81449 -22.80740 -22.07451 -21.22241 -20.93038 -19.95387 -19.22769 -17.54626 -17.31788 -16.75353 -16.42052 -16.08154 -15.84646 -15.36455 -15.15294 -14.77921 -14.48857 -14.14985 -13.98650 -13.66745 -13.44374 -13.35303 -12.93758 -12.70806 -12.53238 -12.44416 -12.33741 -12.08569 -11.94544 -11.80552 -11.42269 -11.36026 -11.30868 -11.29040 -11.02459 -10.98358 -10.91077 -10.69992 -10.31082 -10.12397 -9.62020 -9.49513 -9.37835 -9.06324 -8.77554 -7.73722 -7.62613 -7.07264 -4.67059 2.03895 2.44889 2.51552 2.87853 2.94221 2.97121 3.05098 3.49741 3.61458 3.71944 4.29783 4.38721 4.47094 4.48107 4.59491 4.70712 4.92080 4.98577 5.11636 5.15773 5.17874 5.30751 5.35885 5.48274 5.52875 5.54369 5.63876 5.68220 5.71225 5.87129 5.91142 6.10261 6.21662 6.23742 6.28657 6.55596 6.75796 6.82677 6.94858 6.99969 7.09877 7.18318 7.43569 7.67085 7.79190 7.85565 8.01809 8.10439 8.37309 8.57566 8.68259 8.70902 9.83889 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022023 B = 0.002298 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.111518 B =12179.454858 C =13196.531894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.071 0.929 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.103 3.897 8 N -0.612 5.612 9 C 0.518 3.482 10 O -0.502 6.502 11 C 0.049 3.951 12 O -0.335 6.335 13 C 0.516 3.484 14 O -0.554 6.554 15 C -0.274 4.274 16 C -0.041 4.041 17 C -0.184 4.184 18 C 0.132 3.868 19 C -0.434 4.434 20 H 0.087 0.913 21 C 0.072 3.928 22 N -0.763 5.763 23 Si 0.917 3.083 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.258 1.258 27 C -0.239 4.239 28 C -0.017 4.017 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.289 0.711 45 H 0.102 0.898 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.297 7.028 -14.349 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.171 4.171 5 C -0.157 4.157 6 C -0.175 4.175 7 C -0.020 4.020 8 N -0.349 5.349 9 C 0.305 3.695 10 O -0.376 6.376 11 C -0.029 4.029 12 O -0.252 6.252 13 C 0.369 3.631 14 O -0.449 6.449 15 C -0.276 4.276 16 C -0.059 4.059 17 C -0.203 4.203 18 C 0.128 3.872 19 C -0.461 4.461 20 H 0.105 0.895 21 C -0.151 4.151 22 N -0.386 5.386 23 Si 0.740 3.260 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.182 1.182 27 C -0.258 4.258 28 C -0.036 4.036 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.140 0.860 44 H 0.100 0.900 45 H 0.120 0.880 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.769 6.971 -14.540 19.390 hybrid contribution -0.268 -0.132 0.291 0.417 sum 10.501 6.839 -14.249 18.975 Atomic orbital electron populations 1.22250 0.92295 1.04277 1.00887 1.21290 0.96070 0.94735 0.83500 0.91113 1.22038 0.95860 1.01693 0.97532 1.21519 0.95833 1.00422 0.97970 1.21928 1.01329 0.99693 0.94518 1.21822 0.80269 1.00858 0.99054 1.48049 1.07174 1.59011 1.20691 1.20207 0.86697 0.78464 0.84112 1.90811 1.15215 1.53288 1.78326 1.22533 0.89562 1.01121 0.89684 1.86694 1.35955 1.73376 1.29192 1.21689 0.89166 0.73307 0.78988 1.90688 1.21993 1.55748 1.76453 1.18165 0.90687 1.21802 0.96964 1.20715 0.91688 0.95729 0.97809 1.21028 0.98613 1.04332 0.96346 1.17870 0.91752 0.85752 0.91796 1.19934 0.93283 1.37114 0.95763 0.89454 1.26167 1.00966 0.92159 0.95791 1.69736 1.25572 1.28473 1.14802 0.86155 0.79525 0.79356 0.80950 1.18815 1.19915 1.18213 1.20684 0.92894 1.11242 1.01014 1.20335 0.97999 0.93567 0.91705 0.90781 0.90769 0.93877 0.90724 0.91289 0.91579 0.91728 0.91227 0.90449 0.90957 0.89456 0.89037 0.88942 0.87707 0.85993 0.89955 0.88022 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.59 37.16 0.28 -1.37 16 2 C 0.15 1.42 3.49 -67.60 -0.24 1.19 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.02 5.37 -26.61 -0.14 -1.16 16 5 C -0.12 -0.74 5.88 -26.69 -0.16 -0.90 16 6 C -0.14 -0.89 6.08 -26.61 -0.16 -1.05 16 7 C 0.10 0.80 6.33 -3.71 -0.02 0.78 16 8 N -0.61 -6.67 2.97 -165.22 -0.49 -7.16 16 9 C 0.52 7.64 7.68 -10.99 -0.08 7.56 16 10 O -0.50 -9.14 11.90 -14.10 -0.17 -9.31 16 11 C 0.05 0.75 4.35 36.00 0.16 0.91 16 12 O -0.34 -6.87 8.98 -47.37 -0.43 -7.29 16 13 C 0.52 11.55 7.89 34.51 0.27 11.83 16 14 O -0.55 -12.65 16.11 -19.27 -0.31 -12.96 16 15 C -0.27 -6.57 5.89 -104.75 -0.62 -7.19 16 16 C -0.04 -0.99 9.55 -39.59 -0.38 -1.36 16 17 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 18 C 0.13 3.38 5.57 -106.80 -0.59 2.78 16 19 C -0.43 -10.73 9.05 -37.75 -0.34 -11.07 16 20 H 0.09 2.04 7.90 -52.49 -0.41 1.62 16 21 C 0.07 1.67 5.15 -17.31 -0.09 1.58 16 22 N -0.76 -18.48 10.94 55.56 0.61 -17.88 16 23 Si 0.92 17.22 29.59 -169.99 -5.03 12.19 16 24 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 27 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 28 C -0.02 -0.41 9.52 -39.59 -0.38 -0.79 16 29 H 0.07 1.04 6.74 -51.93 -0.35 0.69 16 30 H 0.07 1.04 6.75 -51.93 -0.35 0.69 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.66 5.96 -51.93 -0.31 0.35 16 40 H 0.09 1.26 7.49 -51.93 -0.39 0.87 16 41 H 0.09 1.27 8.10 -51.93 -0.42 0.84 16 42 H 0.10 2.44 7.59 -52.49 -0.40 2.05 16 43 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 44 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 45 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -29.67 373.54 -10.12 -39.79 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.72 Total: 6.43 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.21 Total: -9.44 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.12 Total: -25.04 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.90 Total: -29.56 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.67 -10.12 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758677801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.672 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds